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The map label for this gene is ynbD [C]

Identifier: 212224292

GI number: 212224292

Start: 1049954

End: 1050397

Strand: Reverse

Name: ynbD [C]

Synonym: TON_1143

Alternate gene names: 212224292

Gene position: 1050397-1049954 (Counterclockwise)

Preceding gene: 212224294

Following gene: 212224278

Centisome position: 56.85

GC content: 52.03

Gene sequence:

>444_bases
ATGAATCCAAGGTTCGCGTCCGGCAGAGTTGCCTTCTCAAGGATGCCAACGGAAAGAGAGCTGGACGAGGTAGCGAAGAA
ATTTGATGCCATCGTGGTCCTCGTCGAAGAGTTTGAGCTCCCCTATTCGCTGGAGGAATGGAAAAAGCGCGGAGTTGAGG
TTCTTCACAGCCCGATTCCTGACTTCATGGCGCCGAGCATCGAACAGCTCTTTGAAATCCTCCGCCGGATTGAGGAAAAC
ACTGCGGAAGGCAAGCACGTTCTTATCCATTGTATGGGTGGCTCCGGCAGAAGCGGGACGGTGGCAGTTGCGTGGCTGAT
GTACTCTCAAGGCCTATCCCTTCGTGAAGCCCTTTCAAGGGTGCGCTCACTTAAACCAAGCGCCGTTGAGACACCCGACC
AGCTGAACGTTTTAAAGATGCTGGAAAAATTTTTGAAAAAATGA

Upstream 100 bases:

>100_bases
TCTATGGTTCATAAATACGTTTTGGTTCTCTCACAGATGTAAAATAAAACTCTGCTCCGAAAGATTTATCTCACATCTTG
CGAGTTGCTCTTGGGGTATC

Downstream 100 bases:

>100_bases
CGGTTTTTATTGTGAAATTTGTAGCTATCGCTTCAAGAACGCCGTGACAAGGGAGCTCTACGTGAAGCCCGACCTCCGCG
CCCTCTGGGAGCTCATTAGG

Product: protein-tyrosine phosphatase

Products: NA

Alternate protein names: Protein-Tyrosine Phosphatase; Protein Tyrosine/Serine/Threonine Phosphatase; Protein Tyrosine Phosphatase

Number of amino acids: Translated: 147; Mature: 147

Protein sequence:

>147_residues
MNPRFASGRVAFSRMPTERELDEVAKKFDAIVVLVEEFELPYSLEEWKKRGVEVLHSPIPDFMAPSIEQLFEILRRIEEN
TAEGKHVLIHCMGGSGRSGTVAVAWLMYSQGLSLREALSRVRSLKPSAVETPDQLNVLKMLEKFLKK

Sequences:

>Translated_147_residues
MNPRFASGRVAFSRMPTERELDEVAKKFDAIVVLVEEFELPYSLEEWKKRGVEVLHSPIPDFMAPSIEQLFEILRRIEEN
TAEGKHVLIHCMGGSGRSGTVAVAWLMYSQGLSLREALSRVRSLKPSAVETPDQLNVLKMLEKFLKK
>Mature_147_residues
MNPRFASGRVAFSRMPTERELDEVAKKFDAIVVLVEEFELPYSLEEWKKRGVEVLHSPIPDFMAPSIEQLFEILRRIEEN
TAEGKHVLIHCMGGSGRSGTVAVAWLMYSQGLSLREALSRVRSLKPSAVETPDQLNVLKMLEKFLKK

Specific function: Unknown

COG id: COG2453

COG function: function code T; Predicted protein-tyrosine phosphatase

Gene ontology:

Cell location: Integral Membrane Protein [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Caenorhabditis elegans, GI17542340, Length=97, Percent_Identity=34.020618556701, Blast_Score=70, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 16716; Mature: 16716

Theoretical pI: Translated: 7.61; Mature: 7.61

Prosite motif: PS00383 TYR_PHOSPHATASE_1 ; PS50056 TYR_PHOSPHATASE_2 ; PS50054 TYR_PHOSPHATASE_DUAL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNPRFASGRVAFSRMPTERELDEVAKKFDAIVVLVEEFELPYSLEEWKKRGVEVLHSPIP
CCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCC
DFMAPSIEQLFEILRRIEENTAEGKHVLIHCMGGSGRSGTVAVAWLMYSQGLSLREALSR
CCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCHHHHHHH
VRSLKPSAVETPDQLNVLKMLEKFLKK
HHCCCCCCCCCCHHHHHHHHHHHHHCC
>Mature Secondary Structure
MNPRFASGRVAFSRMPTERELDEVAKKFDAIVVLVEEFELPYSLEEWKKRGVEVLHSPIP
CCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCC
DFMAPSIEQLFEILRRIEENTAEGKHVLIHCMGGSGRSGTVAVAWLMYSQGLSLREALSR
CCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCHHHHHHH
VRSLKPSAVETPDQLNVLKMLEKFLKK
HHCCCCCCCCCCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA