Click here to switch to the map view.

The map label for this gene is 212224253

Identifier: 212224253

GI number: 212224253

Start: 1022981

End: 1023397

Strand: Reverse

Name: 212224253

Synonym: TON_1104

Alternate gene names: NA

Gene position: 1023397-1022981 (Counterclockwise)

Preceding gene: 212224255

Following gene: 212224252

Centisome position: 55.39

GC content: 50.84

Gene sequence:

>417_bases
ATGGAGAAACGCTTACCCGGAAAAGTGAGGCGAGCCATTCGTGCTAAATATTACGACATCGAGCCAAGAGCCTGGATAGG
CAAGAGAGGGCTCGATGAGAGCGTTATAAGTGAGATTAACACCCAGCTCGAGAAGGACGGCATACTCAAGGTCGAGATCA
GGAAGGGTGCTCTCATCAGCACGGGCATGGAAAGAAGGGAGCTGGCAGAGAAGGTGGCCGAGCTCACCGACAGCGAACTC
ATCGAAGTCAGGGGCAAAAGGTTTATATTGTTCAAGCCGAGAGAGGGGTGGGAAAAGTATTTAAGGAAGCTCCAGAGAAA
GGAGCTTTCGAAGGAAAGGCGGGAAGAGAAGCCCGTTAAGAAAGTCAAGCTCGACATCGCTCAATTCAGGAGGAAATTCA
AGAAGGGGAGGGATTGA

Upstream 100 bases:

>100_bases
CCGAGCAACTTTGCGAAGGCGAAGTTTGCTAGGCAACCTTTAAAAGCCAAACTTTTATAAAGCCTTCAGCCTACGGCGAG
AGGCCTTAGAGGTGAGAGAG

Downstream 100 bases:

>100_bases
AGGATGGCTACGGTTTATGACGTTCCCGGTGATTTGCTCGTCGAGAGGGTTGCCCAGAAGCTCAAGGAGATAGAGGCCAT
AAAGCCGCCCGAGTGGGCCC

Product: RNA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 138; Mature: 138

Protein sequence:

>138_residues
MEKRLPGKVRRAIRAKYYDIEPRAWIGKRGLDESVISEINTQLEKDGILKVEIRKGALISTGMERRELAEKVAELTDSEL
IEVRGKRFILFKPREGWEKYLRKLQRKELSKERREEKPVKKVKLDIAQFRRKFKKGRD

Sequences:

>Translated_138_residues
MEKRLPGKVRRAIRAKYYDIEPRAWIGKRGLDESVISEINTQLEKDGILKVEIRKGALISTGMERRELAEKVAELTDSEL
IEVRGKRFILFKPREGWEKYLRKLQRKELSKERREEKPVKKVKLDIAQFRRKFKKGRD
>Mature_138_residues
MEKRLPGKVRRAIRAKYYDIEPRAWIGKRGLDESVISEINTQLEKDGILKVEIRKGALISTGMERRELAEKVAELTDSEL
IEVRGKRFILFKPREGWEKYLRKLQRKELSKERREEKPVKKVKLDIAQFRRKFKKGRD

Specific function: Unknown

COG id: COG1534

COG function: function code J; Predicted RNA-binding protein containing KH domain, possibly ribosomal protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CRM domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001890
- InterPro:   IPR017924
- ProDom:   PD010559 [H]

Pfam domain/function: PF01985 CRS1_YhbY [H]

EC number: NA

Molecular weight: Translated: 16452; Mature: 16452

Theoretical pI: Translated: 10.92; Mature: 10.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKRLPGKVRRAIRAKYYDIEPRAWIGKRGLDESVISEINTQLEKDGILKVEIRKGALIS
CCCCCCHHHHHHHHHHHCCCCCCHHHCCCCCCHHHHHHHHHHHHHCCEEEEEECCCCHHH
TGMERRELAEKVAELTDSELIEVRGKRFILFKPREGWEKYLRKLQRKELSKERREEKPVK
CCHHHHHHHHHHHHHCHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCHHH
KVKLDIAQFRRKFKKGRD
HHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MEKRLPGKVRRAIRAKYYDIEPRAWIGKRGLDESVISEINTQLEKDGILKVEIRKGALIS
CCCCCCHHHHHHHHHHHCCCCCCHHHCCCCCCHHHHHHHHHHHHHCCEEEEEECCCCHHH
TGMERRELAEKVAELTDSELIEVRGKRFILFKPREGWEKYLRKLQRKELSKERREEKPVK
CCHHHHHHHHHHHHHCHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCHHH
KVKLDIAQFRRKFKKGRD
HHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]