Definition Thermococcus onnurineus NA1, complete genome.
Accession NC_011529
Length 1,847,607

Click here to switch to the map view.

The map label for this gene is 212223886

Identifier: 212223886

GI number: 212223886

Start: 686911

End: 687783

Strand: Reverse

Name: 212223886

Synonym: TON_0737

Alternate gene names: NA

Gene position: 687783-686911 (Counterclockwise)

Preceding gene: 212223887

Following gene: 212223874

Centisome position: 37.23

GC content: 53.49

Gene sequence:

>873_bases
ATGGACGAGCTGAGAAGGGCCGTTTTGAACGTTATCAGAAAGATCCGCTCTCACAGAGAGCTCTACGTGAAGAACGAGGA
GGCTGTGAAGCAGCACCTAATAGGCGAGATTTTTCAGGCCCTCGGGTGGGACTGGAACAACCCTGAGGAGGTTCGTCCAG
AGGAGAGAACCGAGGATGGGAGGGCTGACTACGCGCTCATTCTGAACGGGGGGGTCTTCGCCTACGTCGAAGCTAAGAAC
CTTGGTGTGAACATCCTCAAGCGCGAGGAGCCTCTGAGGCAGCTTGCCCGCTACTGCTTCAACTCAGGTGTTCGCTACGG
CATTCTCACCAACGGTGCGATGTGGATAGCGGTCAAGGCATTTGAAGAAGGCTCTAGGCTGAGGGACAGGGTTCTGCTTA
CGGTCAACGTTGAGGAGGAACCCGTCGAGAAGGCCGTTCTCAAGCTGTCTATCCTGTCGAAGTCCCGCATAGATGACATC
GAGAGACTCTCGTCTCTTCTCAGGGCGATGGAGTTGAGCTTCATAGGGCTGAAAAGAGAAGGCTACCCTGAGAAGATGCT
CATCGAGTATCTGACCTCAAAAGAGGGATCAAATACCGTTCCTGTGGAGGATCTGACAGGCGACGAAACGCCCAAAGCAG
CTTACGTCTATGACAGTGGCTGGAAACTCCTTCCATTGCCGGAGAAGAGCATCAAAGGTGTTCTGCTTGCGGTTCTTCTC
TACATGGAGCGCAGGGCTCAAGGCTACCAGCGTGAGGAAATAAGGAAGGCCTACGAGCACCTCAGGACGATGCCCCTGAA
CCCAAAAACTGCTCTAGAGATACTGAGAAAGCTCGAGGAGGAAGAAAAGCTCAGAATTTCCGTGGAGCTCTAA

Upstream 100 bases:

>100_bases
GTAATCGACGTTGATGGGGCCCTCACCAAGCTCAAGCTTGGCTCATTTAGGGGTTTTGAGGCTGGAAGCAGGAAGTACAT
CATCGAGGTCGGTGGGTGAT

Downstream 100 bases:

>100_bases
ACGACCTTCCAGAGCTCGTCGCTCTCTGGCCTCTCCAGAGGCTTTTCCTTTCCGTTATCAACCATTACTCTCGATTCTTT
GTCTTCTAGGAACTCCCCGA

Product: restriction endonuclease

Products: NA

Alternate protein names: Type I Restriction R Protein N Terminal Domain Protein

Number of amino acids: Translated: 290; Mature: 290

Protein sequence:

>290_residues
MDELRRAVLNVIRKIRSHRELYVKNEEAVKQHLIGEIFQALGWDWNNPEEVRPEERTEDGRADYALILNGGVFAYVEAKN
LGVNILKREEPLRQLARYCFNSGVRYGILTNGAMWIAVKAFEEGSRLRDRVLLTVNVEEEPVEKAVLKLSILSKSRIDDI
ERLSSLLRAMELSFIGLKREGYPEKMLIEYLTSKEGSNTVPVEDLTGDETPKAAYVYDSGWKLLPLPEKSIKGVLLAVLL
YMERRAQGYQREEIRKAYEHLRTMPLNPKTALEILRKLEEEEKLRISVEL

Sequences:

>Translated_290_residues
MDELRRAVLNVIRKIRSHRELYVKNEEAVKQHLIGEIFQALGWDWNNPEEVRPEERTEDGRADYALILNGGVFAYVEAKN
LGVNILKREEPLRQLARYCFNSGVRYGILTNGAMWIAVKAFEEGSRLRDRVLLTVNVEEEPVEKAVLKLSILSKSRIDDI
ERLSSLLRAMELSFIGLKREGYPEKMLIEYLTSKEGSNTVPVEDLTGDETPKAAYVYDSGWKLLPLPEKSIKGVLLAVLL
YMERRAQGYQREEIRKAYEHLRTMPLNPKTALEILRKLEEEEKLRISVEL
>Mature_290_residues
MDELRRAVLNVIRKIRSHRELYVKNEEAVKQHLIGEIFQALGWDWNNPEEVRPEERTEDGRADYALILNGGVFAYVEAKN
LGVNILKREEPLRQLARYCFNSGVRYGILTNGAMWIAVKAFEEGSRLRDRVLLTVNVEEEPVEKAVLKLSILSKSRIDDI
ERLSSLLRAMELSFIGLKREGYPEKMLIEYLTSKEGSNTVPVEDLTGDETPKAAYVYDSGWKLLPLPEKSIKGVLLAVLL
YMERRAQGYQREEIRKAYEHLRTMPLNPKTALEILRKLEEEEKLRISVEL

Specific function: Unknown

COG id: COG2810

COG function: function code V; Predicted type IV restriction endonuclease

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 33500; Mature: 33500

Theoretical pI: Translated: 6.35; Mature: 6.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDELRRAVLNVIRKIRSHRELYVKNEEAVKQHLIGEIFQALGWDWNNPEEVRPEERTEDG
CCHHHHHHHHHHHHHHCCHHEEECCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
RADYALILNGGVFAYVEAKNLGVNILKREEPLRQLARYCFNSGVRYGILTNGAMWIAVKA
CCCEEEEEECCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCEEEEEEEE
FEEGSRLRDRVLLTVNVEEEPVEKAVLKLSILSKSRIDDIERLSSLLRAMELSFIGLKRE
HHCCCHHHCEEEEEEECCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHEEECCC
GYPEKMLIEYLTSKEGSNTVPVEDLTGDETPKAAYVYDSGWKLLPLPEKSIKGVLLAVLL
CCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEECCHHHHHHHHHHHHH
YMERRAQGYQREEIRKAYEHLRTMPLNPKTALEILRKLEEEEKLRISVEL
HHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCEEEEEEEC
>Mature Secondary Structure
MDELRRAVLNVIRKIRSHRELYVKNEEAVKQHLIGEIFQALGWDWNNPEEVRPEERTEDG
CCHHHHHHHHHHHHHHCCHHEEECCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
RADYALILNGGVFAYVEAKNLGVNILKREEPLRQLARYCFNSGVRYGILTNGAMWIAVKA
CCCEEEEEECCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCEEEEEEEE
FEEGSRLRDRVLLTVNVEEEPVEKAVLKLSILSKSRIDDIERLSSLLRAMELSFIGLKRE
HHCCCHHHCEEEEEEECCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHEEECCC
GYPEKMLIEYLTSKEGSNTVPVEDLTGDETPKAAYVYDSGWKLLPLPEKSIKGVLLAVLL
CCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEECCHHHHHHHHHHHHH
YMERRAQGYQREEIRKAYEHLRTMPLNPKTALEILRKLEEEEKLRISVEL
HHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA