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The map label for this gene is rtcB [C]

Identifier: 212223863

GI number: 212223863

Start: 667471

End: 668910

Strand: Reverse

Name: rtcB [C]

Synonym: TON_0714

Alternate gene names: 212223863

Gene position: 668910-667471 (Counterclockwise)

Preceding gene: 212223864

Following gene: 212223862

Centisome position: 36.2

GC content: 56.32

Gene sequence:

>1440_bases
ATGATTCCGCTGAAGAGAATTGACAAGATAAGGTGGGAGATACCGAAGTTTGATAAAAGAATGCGCGTTCCGGGCAGGGT
TTATGCTGACGACCAACTCATAGAGAAGATGCGCCAGGACAGAACACTTGAGCAGGCGGCAAATGTTGCCATGCTTCCTG
GCATCTACAAGTATTCCATAGTCATGCCCGACGGTCATCAGGGTTATGGCTTCCCGATAGGGGGCGTCGCCGCTTTTGAC
GTTAAGGAAGGAGTTATCAGCCCCGGTGGAGTCGGCTATGACATAAACTGTGGTGTCCGTCTTATCCGCACGAACCTAAC
TGAAAAGGAAGTCAGGCCGAAGATCAAGGAGCTCGTCGACACGCTCTTCAAAAACGTTCCCTCCGGTTTGGGAAGCAAGG
GTAGAGTGAGGCTCCACTGGAGCCAGCTGGATGATGTTTTAGCCGACGGTGCCAAGTGGGCAGTTGACAACGGCTATGGC
TGGAAGGATGATCTTGAGCACCTTGAGGAAGGCGGCAGGATGGAGGGCGCGGATCCCAATGCCGTCAGCCAGAAGGCCAA
GCAGAGGGGAGCTCCACAGCTCGGTTCCCTTGGCTCGGGAAACCACTTCCTCGAAGTTCAGGTCATTGACAGAATCTACG
ACGAGGAAGTGGCGAAGGCCTACGGCCTTTTCGAGGGCCAAGTAGTTGTGATGGTTCACACCGGAAGTAGGGGTCTCGGC
CACCAGGTCGCAAGCGACTATCTTCGCGTGATGGAGAAGGCCAACAGGAAGTACGGAGTTCCATGGCCCGACCGCGAGCT
CGTCAGCGTTCCCTTCCAGAGCGAAGAGGGCCAGAGGTACTTCAGCGCAATGAAGGCGGCAGCAAACTTCGCCTGGGCCA
ACAGGCAGATGATAACCCACTGGGTCAGGGAGAGCTTTGAGGAGGTCTTTAAGCGCAAAGCCGAGGACATGGAGATGACC
ATCGTTTACGACGTTGCCCATAACATAGCAAAGGTCGAGGAGCACGAGGTTGATGGAAAGAAGGTCAGGGTCGTCGTCCA
CAGGAAGGGCGCTACCAGGGCCTTCCCAGCCGGTCATCCAGATGTGCCGAAGGCTTACAGGGACGTTGGCCAGCCGGTTC
TCATTCCTGGCTCGATGGGTACCGCCAGCTACGTTCTTGCTGGAGCGGAAGGTTCTATGAAGGAAACCTTCGGTTCAACC
TGCCATGGTGCCGGAAGGCTCCTAAGCAGAAAAGCGGCAACCAGACAGTATCGCGGTGACAGGCTTAAGAACGAGCTCCT
CCAGAAGGGCGTCTATATCCGGGCGGCAAGCCTCAGGGTCGTCGCTGAAGAGGCCCCAGGCGCTTACAAGAGCGTTGACA
ACGTTGTTAACGTCGTCCACGAGGCTGGCATTGCCAAGCTCGTCGCCAGGATGCGCCCGATGGGTGTTGCGAAGGGCTGA

Upstream 100 bases:

>100_bases
TCAACTACGTGCCGAAGGAGAGAAGACTGAAGCTGGAGTAACACTTCAGTCCAGCTAAAGCTTAAATAACTTCGGGGGGA
TTTAAAACGGGGGTGAGAGG

Downstream 100 bases:

>100_bases
TGCCTTTCTTTCAACTTTTGGGGGCGTTGCAATGAAGGAACTAACCCACGTCGATGAAAAAGGTGTCAAGATGGTCGAGG
TTGGGCATAAGAGGGAGGTC

Product: RNA terminal phosphate cyclase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 479; Mature: 479

Protein sequence:

>479_residues
MIPLKRIDKIRWEIPKFDKRMRVPGRVYADDQLIEKMRQDRTLEQAANVAMLPGIYKYSIVMPDGHQGYGFPIGGVAAFD
VKEGVISPGGVGYDINCGVRLIRTNLTEKEVRPKIKELVDTLFKNVPSGLGSKGRVRLHWSQLDDVLADGAKWAVDNGYG
WKDDLEHLEEGGRMEGADPNAVSQKAKQRGAPQLGSLGSGNHFLEVQVIDRIYDEEVAKAYGLFEGQVVVMVHTGSRGLG
HQVASDYLRVMEKANRKYGVPWPDRELVSVPFQSEEGQRYFSAMKAAANFAWANRQMITHWVRESFEEVFKRKAEDMEMT
IVYDVAHNIAKVEEHEVDGKKVRVVVHRKGATRAFPAGHPDVPKAYRDVGQPVLIPGSMGTASYVLAGAEGSMKETFGST
CHGAGRLLSRKAATRQYRGDRLKNELLQKGVYIRAASLRVVAEEAPGAYKSVDNVVNVVHEAGIAKLVARMRPMGVAKG

Sequences:

>Translated_479_residues
MIPLKRIDKIRWEIPKFDKRMRVPGRVYADDQLIEKMRQDRTLEQAANVAMLPGIYKYSIVMPDGHQGYGFPIGGVAAFD
VKEGVISPGGVGYDINCGVRLIRTNLTEKEVRPKIKELVDTLFKNVPSGLGSKGRVRLHWSQLDDVLADGAKWAVDNGYG
WKDDLEHLEEGGRMEGADPNAVSQKAKQRGAPQLGSLGSGNHFLEVQVIDRIYDEEVAKAYGLFEGQVVVMVHTGSRGLG
HQVASDYLRVMEKANRKYGVPWPDRELVSVPFQSEEGQRYFSAMKAAANFAWANRQMITHWVRESFEEVFKRKAEDMEMT
IVYDVAHNIAKVEEHEVDGKKVRVVVHRKGATRAFPAGHPDVPKAYRDVGQPVLIPGSMGTASYVLAGAEGSMKETFGST
CHGAGRLLSRKAATRQYRGDRLKNELLQKGVYIRAASLRVVAEEAPGAYKSVDNVVNVVHEAGIAKLVARMRPMGVAKG
>Mature_479_residues
MIPLKRIDKIRWEIPKFDKRMRVPGRVYADDQLIEKMRQDRTLEQAANVAMLPGIYKYSIVMPDGHQGYGFPIGGVAAFD
VKEGVISPGGVGYDINCGVRLIRTNLTEKEVRPKIKELVDTLFKNVPSGLGSKGRVRLHWSQLDDVLADGAKWAVDNGYG
WKDDLEHLEEGGRMEGADPNAVSQKAKQRGAPQLGSLGSGNHFLEVQVIDRIYDEEVAKAYGLFEGQVVVMVHTGSRGLG
HQVASDYLRVMEKANRKYGVPWPDRELVSVPFQSEEGQRYFSAMKAAANFAWANRQMITHWVRESFEEVFKRKAEDMEMT
IVYDVAHNIAKVEEHEVDGKKVRVVVHRKGATRAFPAGHPDVPKAYRDVGQPVLIPGSMGTASYVLAGAEGSMKETFGST
CHGAGRLLSRKAATRQYRGDRLKNELLQKGVYIRAASLRVVAEEAPGAYKSVDNVVNVVHEAGIAKLVARMRPMGVAKG

Specific function: Unknown

COG id: COG1690

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0027 (rtcB) family [H]

Homologues:

Organism=Homo sapiens, GI7657015, Length=494, Percent_Identity=48.9878542510121, Blast_Score=481, Evalue=1e-136,
Organism=Escherichia coli, GI2367224, Length=446, Percent_Identity=28.2511210762332, Blast_Score=141, Evalue=8e-35,
Organism=Caenorhabditis elegans, GI17506665, Length=494, Percent_Identity=50.6072874493927, Blast_Score=489, Evalue=1e-138,
Organism=Drosophila melanogaster, GI24585217, Length=494, Percent_Identity=49.7975708502024, Blast_Score=463, Evalue=1e-130,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001233 [H]

Pfam domain/function: PF01139 UPF0027 [H]

EC number: NA

Molecular weight: Translated: 53111; Mature: 53111

Theoretical pI: Translated: 9.69; Mature: 9.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIPLKRIDKIRWEIPKFDKRMRVPGRVYADDQLIEKMRQDRTLEQAANVAMLPGIYKYSI
CCCHHHHHHHHHCCCCHHHHCCCCCCCCCCHHHHHHHHHCCHHHHHCCEEECCCCEEEEE
VMPDGHQGYGFPIGGVAAFDVKEGVISPGGVGYDINCGVRLIRTNLTEKEVRPKIKELVD
EECCCCCCCCCCCCCEEEEEHHCCCCCCCCCCEECCCCEEEEECCCCHHHHHHHHHHHHH
TLFKNVPSGLGSKGRVRLHWSQLDDVLADGAKWAVDNGYGWKDDLEHLEEGGRMEGADPN
HHHHHCCCCCCCCCEEEEEHHHHHHHHHCCCCEEECCCCCCHHHHHHHHCCCCCCCCCCH
AVSQKAKQRGAPQLGSLGSGNHFLEVQVIDRIYDEEVAKAYGLFEGQVVVMVHTGSRGLG
HHHHHHHHCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCH
HQVASDYLRVMEKANRKYGVPWPDRELVSVPFQSEEGQRYFSAMKAAANFAWANRQMITH
HHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
WVRESFEEVFKRKAEDMEMTIVYDVAHNIAKVEEHEVDGKKVRVVVHRKGATRAFPAGHP
HHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCC
DVPKAYRDVGQPVLIPGSMGTASYVLAGAEGSMKETFGSTCHGAGRLLSRKAATRQYRGD
CCCHHHHHCCCCEEEECCCCCCCEEEECCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHH
RLKNELLQKGVYIRAASLRVVAEEAPGAYKSVDNVVNVVHEAGIAKLVARMRPMGVAKG
HHHHHHHHCCCEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MIPLKRIDKIRWEIPKFDKRMRVPGRVYADDQLIEKMRQDRTLEQAANVAMLPGIYKYSI
CCCHHHHHHHHHCCCCHHHHCCCCCCCCCCHHHHHHHHHCCHHHHHCCEEECCCCEEEEE
VMPDGHQGYGFPIGGVAAFDVKEGVISPGGVGYDINCGVRLIRTNLTEKEVRPKIKELVD
EECCCCCCCCCCCCCEEEEEHHCCCCCCCCCCEECCCCEEEEECCCCHHHHHHHHHHHHH
TLFKNVPSGLGSKGRVRLHWSQLDDVLADGAKWAVDNGYGWKDDLEHLEEGGRMEGADPN
HHHHHCCCCCCCCCEEEEEHHHHHHHHHCCCCEEECCCCCCHHHHHHHHCCCCCCCCCCH
AVSQKAKQRGAPQLGSLGSGNHFLEVQVIDRIYDEEVAKAYGLFEGQVVVMVHTGSRGLG
HHHHHHHHCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCH
HQVASDYLRVMEKANRKYGVPWPDRELVSVPFQSEEGQRYFSAMKAAANFAWANRQMITH
HHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
WVRESFEEVFKRKAEDMEMTIVYDVAHNIAKVEEHEVDGKKVRVVVHRKGATRAFPAGHP
HHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCC
DVPKAYRDVGQPVLIPGSMGTASYVLAGAEGSMKETFGSTCHGAGRLLSRKAATRQYRGD
CCCHHHHHCCCCEEEECCCCCCCEEEECCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHH
RLKNELLQKGVYIRAASLRVVAEEAPGAYKSVDNVVNVVHEAGIAKLVARMRPMGVAKG
HHHHHHHHCCCEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA