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The map label for this gene is asnC [C]

Identifier: 212223629

GI number: 212223629

Start: 442886

End: 443347

Strand: Reverse

Name: asnC [C]

Synonym: TON_0482

Alternate gene names: 212223629

Gene position: 443347-442886 (Counterclockwise)

Preceding gene: 212223632

Following gene: 212223625

Centisome position: 24.0

GC content: 51.3

Gene sequence:

>462_bases
ATGCGGGAGAATGAACACCTTGACGAACTCGATAGGATGATACTCCACATCCTCCAGGAGGACGGGAGGGCGAGCTACTC
GGAGATAGCGAGGAGGCTCAGAGTACCTGAGTCGACGGTAAGGCTCCGCGTGAAGAAGCTCTTGGAAAGGGGAATCATAA
GAAAGTTCGCGGCACTGATAAACCCATTCAAGGCGGGCTATAACATAGTGGCATTCATAGCCGTTGACATCGAGCCAAAC
AAAATAAAGCAAGCAGCGGAAGAGCTAAGCAAGCTGCCTGAAGTTGATGTTCTCGGCATAGCCACAGGAGCGCACGACAT
ACTCATGCAGGTAACGGTGAAGGATTTGCAGGAGCTGGAGAGCTTTCTAATAGAAAAGCTGGGAAAGATCGAGGGAATAA
GGAGCACGGAAACATCAATCCTGACGAGCGTCCGGAAGTGGGGCTACGCAAGGGTGTTTTAG

Upstream 100 bases:

>100_bases
TACACGTTGTAGAATTAATAGTAATTTCGCCCAAATTTTGGTGAATTCGCAGAAAAGCTTAAGACCTTAATGTCGAATTG
ACAGAATAGGTGGTTGCATA

Downstream 100 bases:

>100_bases
GTGACCCTCTCAAGACCGTTTTTCTTTACTATGTAAGTGTCCTCGTGCTTTATAGTGCCCTGTGGAATCATGAGCGGCGG
GTGGATTATTGTGAGAACCA

Product: transcription regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 153; Mature: 153

Protein sequence:

>153_residues
MRENEHLDELDRMILHILQEDGRASYSEIARRLRVPESTVRLRVKKLLERGIIRKFAALINPFKAGYNIVAFIAVDIEPN
KIKQAAEELSKLPEVDVLGIATGAHDILMQVTVKDLQELESFLIEKLGKIEGIRSTETSILTSVRKWGYARVF

Sequences:

>Translated_153_residues
MRENEHLDELDRMILHILQEDGRASYSEIARRLRVPESTVRLRVKKLLERGIIRKFAALINPFKAGYNIVAFIAVDIEPN
KIKQAAEELSKLPEVDVLGIATGAHDILMQVTVKDLQELESFLIEKLGKIEGIRSTETSILTSVRKWGYARVF
>Mature_153_residues
MRENEHLDELDRMILHILQEDGRASYSEIARRLRVPESTVRLRVKKLLERGIIRKFAALINPFKAGYNIVAFIAVDIEPN
KIKQAAEELSKLPEVDVLGIATGAHDILMQVTVKDLQELESFLIEKLGKIEGIRSTETSILTSVRKWGYARVF

Specific function: Activator Of Asna Transcription; Autogenous Regulator Of Its Own Transcription; And Repressor Of The Expression Of Gida At A Post-Transcriptional Level. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH asnC-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790182, Length=140, Percent_Identity=33.5714285714286, Blast_Score=78, Evalue=2e-16,
Organism=Escherichia coli, GI1787116, Length=143, Percent_Identity=28.6713286713287, Blast_Score=73, Evalue=8e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011008
- InterPro:   IPR000485
- InterPro:   IPR013249
- InterPro:   IPR019888
- InterPro:   IPR019887
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01037 AsnC_trans_reg; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 17455; Mature: 17455

Theoretical pI: Translated: 8.92; Mature: 8.92

Prosite motif: PS50956 HTH_ASNC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRENEHLDELDRMILHILQEDGRASYSEIARRLRVPESTVRLRVKKLLERGIIRKFAALI
CCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
NPFKAGYNIVAFIAVDIEPNKIKQAAEELSKLPEVDVLGIATGAHDILMQVTVKDLQELE
HHHHCCCEEEEEEEEECCHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHHH
SFLIEKLGKIEGIRSTETSILTSVRKWGYARVF
HHHHHHHHHHCCCCHHHHHHHHHHHHHCHHCCC
>Mature Secondary Structure
MRENEHLDELDRMILHILQEDGRASYSEIARRLRVPESTVRLRVKKLLERGIIRKFAALI
CCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
NPFKAGYNIVAFIAVDIEPNKIKQAAEELSKLPEVDVLGIATGAHDILMQVTVKDLQELE
HHHHCCCEEEEEEEEECCHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHHH
SFLIEKLGKIEGIRSTETSILTSVRKWGYARVF
HHHHHHHHHHCCCCHHHHHHHHHHHHHCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12622808 [H]