Click here to switch to the map view.

The map label for this gene is 212223599

Identifier: 212223599

GI number: 212223599

Start: 422986

End: 423627

Strand: Reverse

Name: 212223599

Synonym: TON_0453

Alternate gene names: NA

Gene position: 423627-422986 (Counterclockwise)

Preceding gene: 212223600

Following gene: 212223598

Centisome position: 22.93

GC content: 56.23

Gene sequence:

>642_bases
ATGATGCTGATAACGACTTCACACAGACCCACCAGGAGGACGAGGAGCTTCGGGCACGACCTGGAGAGGGTGTTCCCCAA
CTCCCTCTACCTGACGAGGGGTAAGAAGACCATCCAAGACCTTCTCATGGAGGCCTACGACAGGAACTACGAGAGGCTTC
TCATTGTCAACGTCTGGAAAGGCAACCCGTTAAAGATGACCTTCATCAAGGTCGACCCCGACGACTGGGGCTACCTCGGC
TACCTCTACCTCCACGGCATAAAGCTCCAGCGCGAGATAGGCTTCAGAAACATAAGGCCCATACGCGAGGAGATGCCCTT
CATCGTCACCACCGCCAAACGCGTCGGCCTCGATCACGTTGCCTTCGCGCAGGCCTTCGCCGAGCTGACTGGAGGGAAGT
TCGTTCCCAGAAAGGAGCGTTCCCTTCTCGGTATAGCTGACAGATACAATACAGATGTTCTCGGCGTCATCGAGAGACAC
CCGCGCGGAATGGCGGTCAACTTCTACCGCCTCGACGTGACGAAAGAGAGGGCAGTTGGCCCGCTCATAAGCGTCAAGAT
ATGGATAATGGAGGACGGCCGGAGATGGGACTACAAGGAGGCCCTCGGAATAAAGAAGAAGCCTGGCCAATCGAGGGAGT
AA

Upstream 100 bases:

>100_bases
TACAAGCCCAGGCCCAGGGTGGCCAGGCGCGTAAAGGCAATCTGATTCTTTCCAATTTCGAAAGGCTTTTATCCAATCAA
CTGAGTTTTGAGTGAGGGCC

Downstream 100 bases:

>100_bases
TTGAGCTCTCCTTTCCCGACGAGGAGACGGCTAGGGTAGTTTATGAGAGTGTCCTTTACGAGCATAAGAGCGTGCCGTAT
AGAAGGAGCAAAATCGATTT

Product: ribosomal biogenesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 213; Mature: 213

Protein sequence:

>213_residues
MMLITTSHRPTRRTRSFGHDLERVFPNSLYLTRGKKTIQDLLMEAYDRNYERLLIVNVWKGNPLKMTFIKVDPDDWGYLG
YLYLHGIKLQREIGFRNIRPIREEMPFIVTTAKRVGLDHVAFAQAFAELTGGKFVPRKERSLLGIADRYNTDVLGVIERH
PRGMAVNFYRLDVTKERAVGPLISVKIWIMEDGRRWDYKEALGIKKKPGQSRE

Sequences:

>Translated_213_residues
MMLITTSHRPTRRTRSFGHDLERVFPNSLYLTRGKKTIQDLLMEAYDRNYERLLIVNVWKGNPLKMTFIKVDPDDWGYLG
YLYLHGIKLQREIGFRNIRPIREEMPFIVTTAKRVGLDHVAFAQAFAELTGGKFVPRKERSLLGIADRYNTDVLGVIERH
PRGMAVNFYRLDVTKERAVGPLISVKIWIMEDGRRWDYKEALGIKKKPGQSRE
>Mature_213_residues
MMLITTSHRPTRRTRSFGHDLERVFPNSLYLTRGKKTIQDLLMEAYDRNYERLLIVNVWKGNPLKMTFIKVDPDDWGYLG
YLYLHGIKLQREIGFRNIRPIREEMPFIVTTAKRVGLDHVAFAQAFAELTGGKFVPRKERSLLGIADRYNTDVLGVIERH
PRGMAVNFYRLDVTKERAVGPLISVKIWIMEDGRRWDYKEALGIKKKPGQSRE

Specific function: Probably involved in the biogenesis of the ribosome [H]

COG id: COG2136

COG function: function code JA; Predicted exosome subunit/U3 small nucleolar ribonucleoprotein (snoRNP) component, contains IMP4 domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Brix domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004154
- InterPro:   IPR007109 [H]

Pfam domain/function: PF04427 Brix [H]

EC number: NA

Molecular weight: Translated: 24895; Mature: 24895

Theoretical pI: Translated: 10.53; Mature: 10.53

Prosite motif: PS50833 BRIX

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMLITTSHRPTRRTRSFGHDLERVFPNSLYLTRGKKTIQDLLMEAYDRNYERLLIVNVWK
CEEEECCCCCCHHHHHHCCHHHHHCCCCEEEECCHHHHHHHHHHHHCCCCEEEEEEEEEC
GNPLKMTFIKVDPDDWGYLGYLYLHGIKLQREIGFRNIRPIREEMPFIVTTAKRVGLDHV
CCCEEEEEEEECCCCCCEEEEEEHCCEEEEECCCCCCCCCHHHHCCEEEEEHHHHCCHHH
AFAQAFAELTGGKFVPRKERSLLGIADRYNTDVLGVIERHPRGMAVNFYRLDVTKERAVG
HHHHHHHHHCCCCCCCCCCCCEEEEHHHCCCCEEEEEECCCCCEEEEEEEEECCHHHCCC
PLISVKIWIMEDGRRWDYKEALGIKKKPGQSRE
CEEEEEEEEEECCCCCCHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MMLITTSHRPTRRTRSFGHDLERVFPNSLYLTRGKKTIQDLLMEAYDRNYERLLIVNVWK
CEEEECCCCCCHHHHHHCCHHHHHCCCCEEEECCHHHHHHHHHHHHCCCCEEEEEEEEEC
GNPLKMTFIKVDPDDWGYLGYLYLHGIKLQREIGFRNIRPIREEMPFIVTTAKRVGLDHV
CCCEEEEEEEECCCCCCEEEEEEHCCEEEEECCCCCCCCCHHHHCCEEEEEHHHHCCHHH
AFAQAFAELTGGKFVPRKERSLLGIADRYNTDVLGVIERHPRGMAVNFYRLDVTKERAVG
HHHHHHHHHCCCCCCCCCCCCEEEEHHHCCCCEEEEEECCCCCEEEEEEEEECCHHHCCC
PLISVKIWIMEDGRRWDYKEALGIKKKPGQSRE
CEEEEEEEEEECCCCCCHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12622808 [H]