Definition Thermococcus onnurineus NA1, complete genome.
Accession NC_011529
Length 1,847,607

Click here to switch to the map view.

The map label for this gene is 212223567

Identifier: 212223567

GI number: 212223567

Start: 392765

End: 394030

Strand: Reverse

Name: 212223567

Synonym: TON_0421

Alternate gene names: NA

Gene position: 394030-392765 (Counterclockwise)

Preceding gene: 212223571

Following gene: 212223565

Centisome position: 21.33

GC content: 52.53

Gene sequence:

>1266_bases
ATGCTCATGCTCGTCGATGGAGACCTTCACATTCACTCGAGGTACTCGAAAGCGGTCTCGAAGTTAATGACCATTCCGAT
GCTGGCAGAGAATGCACGCTTCAAAGGACTCGGTCTTGTGGGCACGGGAGACATCTTGAACCCCAAGTGGGAGGAGGAGC
TTCTGAAGTACACCGAAAAGATTGACGAGGGAACCTACGAGAGAAAGGGAATCCGCTTTCTGCTAACGACAGAGATCGAG
GACAATAAGAGAGTCCATCACGTTCTCATCTTTCCGAGTATCGATGCCGTTTGCGAGATGCGGGAGGCGCTGAGACCATA
TTCAAACGACATCGACACCGAGGGAAGGCCACACCTCAACCTTTCGGCTGCTGAAATAGCTGACATTGCGAACGAGCTCG
ATGTTCTAATCGGCCCAGCCCATGCTTTTACCCCATGGACAGCACTGTACAAGGAGTACAACAGCCTGAAGGATGCCTAT
CAGGGGGCCAAAATTCACTTCCTCGAGCTCGGCCTTTCCGCCGATTCTGAGATGGCAGATAGAATAAAAGCCCATCACGG
ACTCACCTACCTCAGCAATTCAGATGCCCACTCCCCGATGCCACACCGACTCGGGAGAGAGTTCAACCGCTTCAATATCA
AAGAGGCAACCTTTGAGGAGGTCAGGAAAGCCATCTTGAAGCGCGGAGGGAGAAGAATAGTCCTCAATGCCGGGCTTGAC
CCGAGGCTCGGAAAGTACCATCTAACCGCCTGTTCTCGCTGCTACGCCAAGTATTCACCAGAGGAAGCCAAAGCCTTCAA
ATGGAAGTGCCCCAAGTGTGGCGGGAGGATAAAGAAGGGTGTCCACGACAGAATTCTCGAGCTGGCGGATACAGAAGAAA
GGCCCAAAGACAGGCCGCCCTACCTGAGACTTGCCCCTCTGGCTGAGATAATAGCGATGGTAATCGGCAAAGGTGTTGAG
ACGAAGGCCGTGAAGGCCATCTGGGAGCGCTTTTTGAAGGAGTTCGGAAGCGAGATTGAAGTCCTCGTTGACGTGCCTAT
CGAGAGTCTCGCGGAGGTTCACGAGGAGGTGGCAAAAGCGGTCTGGGCCTACAGGAAGGGCAAGCTGATAGTGATTCCAG
GCGGAGGCGGAAAGTACGGAGAGATAAAACTGCCCGAGGAAATAAGAAAGGCTAGAATAGACGAGCTGGAGAGCGTTGAG
GTGAAAGTGCCGAAGGAAGAATACAAGCCGAAGCAGACTTCGCTGATGAAATTTTTGAAAAACTGA

Upstream 100 bases:

>100_bases
TTTCTCAGAGAGGCAACGAATCCTTCGACTTTCATAGTTTCCACCGATTGAACCTATGGAGAAGCCGTTATAAAGCTTTA
ACCCCCTCAACCTTTGGTTG

Downstream 100 bases:

>100_bases
CCTCCTCCCCGCCCTAAAGGGCGAGGCTCTCAAGAGAAAAAGTAATAGGAAATCAAAGCATGAAGAGGGGCTTTATCAGA
ACCGCAACTACTGGAACGGC

Product: phosphohydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 421; Mature: 421

Protein sequence:

>421_residues
MLMLVDGDLHIHSRYSKAVSKLMTIPMLAENARFKGLGLVGTGDILNPKWEEELLKYTEKIDEGTYERKGIRFLLTTEIE
DNKRVHHVLIFPSIDAVCEMREALRPYSNDIDTEGRPHLNLSAAEIADIANELDVLIGPAHAFTPWTALYKEYNSLKDAY
QGAKIHFLELGLSADSEMADRIKAHHGLTYLSNSDAHSPMPHRLGREFNRFNIKEATFEEVRKAILKRGGRRIVLNAGLD
PRLGKYHLTACSRCYAKYSPEEAKAFKWKCPKCGGRIKKGVHDRILELADTEERPKDRPPYLRLAPLAEIIAMVIGKGVE
TKAVKAIWERFLKEFGSEIEVLVDVPIESLAEVHEEVAKAVWAYRKGKLIVIPGGGGKYGEIKLPEEIRKARIDELESVE
VKVPKEEYKPKQTSLMKFLKN

Sequences:

>Translated_421_residues
MLMLVDGDLHIHSRYSKAVSKLMTIPMLAENARFKGLGLVGTGDILNPKWEEELLKYTEKIDEGTYERKGIRFLLTTEIE
DNKRVHHVLIFPSIDAVCEMREALRPYSNDIDTEGRPHLNLSAAEIADIANELDVLIGPAHAFTPWTALYKEYNSLKDAY
QGAKIHFLELGLSADSEMADRIKAHHGLTYLSNSDAHSPMPHRLGREFNRFNIKEATFEEVRKAILKRGGRRIVLNAGLD
PRLGKYHLTACSRCYAKYSPEEAKAFKWKCPKCGGRIKKGVHDRILELADTEERPKDRPPYLRLAPLAEIIAMVIGKGVE
TKAVKAIWERFLKEFGSEIEVLVDVPIESLAEVHEEVAKAVWAYRKGKLIVIPGGGGKYGEIKLPEEIRKARIDELESVE
VKVPKEEYKPKQTSLMKFLKN
>Mature_421_residues
MLMLVDGDLHIHSRYSKAVSKLMTIPMLAENARFKGLGLVGTGDILNPKWEEELLKYTEKIDEGTYERKGIRFLLTTEIE
DNKRVHHVLIFPSIDAVCEMREALRPYSNDIDTEGRPHLNLSAAEIADIANELDVLIGPAHAFTPWTALYKEYNSLKDAY
QGAKIHFLELGLSADSEMADRIKAHHGLTYLSNSDAHSPMPHRLGREFNRFNIKEATFEEVRKAILKRGGRRIVLNAGLD
PRLGKYHLTACSRCYAKYSPEEAKAFKWKCPKCGGRIKKGVHDRILELADTEERPKDRPPYLRLAPLAEIIAMVIGKGVE
TKAVKAIWERFLKEFGSEIEVLVDVPIESLAEVHEEVAKAVWAYRKGKLIVIPGGGGKYGEIKLPEEIRKARIDELESVE
VKVPKEEYKPKQTSLMKFLKN

Specific function: Unknown

COG id: COG1379

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 DOD-type homing endonuclease domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005287
- InterPro:   IPR003586
- InterPro:   IPR003587
- InterPro:   IPR006142
- InterPro:   IPR004042
- InterPro:   IPR006141
- InterPro:   IPR003141
- InterPro:   IPR016195 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 47723; Mature: 47723

Theoretical pI: Translated: 8.42; Mature: 8.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLMLVDGDLHIHSRYSKAVSKLMTIPMLAENARFKGLGLVGTGDILNPKWEEELLKYTEK
CEEEEECCEEEHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHH
IDEGTYERKGIRFLLTTEIEDNKRVHHVLIFPSIDAVCEMREALRPYSNDIDTEGRPHLN
HCCCCCCCCCEEEEEEECCCCCCCEEEEEEECCHHHHHHHHHHHCCCCCCCCCCCCCCCC
LSAAEIADIANELDVLIGPAHAFTPWTALYKEYNSLKDAYQGAKIHFLELGLSADSEMAD
CHHHHHHHHHHHHHHEECCCHHCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHH
RIKAHHGLTYLSNSDAHSPMPHRLGREFNRFNIKEATFEEVRKAILKRGGRRIVLNAGLD
HHHHHCCEEEECCCCCCCCCCHHHCCHHHHCCCCHHHHHHHHHHHHHCCCCEEEEECCCC
PRLGKYHLTACSRCYAKYSPEEAKAFKWKCPKCGGRIKKGVHDRILELADTEERPKDRPP
CCCCHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC
YLRLAPLAEIIAMVIGKGVETKAVKAIWERFLKEFGSEIEVLVDVPIESLAEVHEEVAKA
CEEHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHH
VWAYRKGKLIVIPGGGGKYGEIKLPEEIRKARIDELESVEVKVPKEEYKPKQTSLMKFLK
HHHHCCCCEEEEECCCCCCCCEECHHHHHHHHHCCCCCCEEECCHHHCCCHHHHHHHHHC
N
C
>Mature Secondary Structure
MLMLVDGDLHIHSRYSKAVSKLMTIPMLAENARFKGLGLVGTGDILNPKWEEELLKYTEK
CEEEEECCEEEHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHH
IDEGTYERKGIRFLLTTEIEDNKRVHHVLIFPSIDAVCEMREALRPYSNDIDTEGRPHLN
HCCCCCCCCCEEEEEEECCCCCCCEEEEEEECCHHHHHHHHHHHCCCCCCCCCCCCCCCC
LSAAEIADIANELDVLIGPAHAFTPWTALYKEYNSLKDAYQGAKIHFLELGLSADSEMAD
CHHHHHHHHHHHHHHEECCCHHCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHH
RIKAHHGLTYLSNSDAHSPMPHRLGREFNRFNIKEATFEEVRKAILKRGGRRIVLNAGLD
HHHHHCCEEEECCCCCCCCCCHHHCCHHHHCCCCHHHHHHHHHHHHHCCCCEEEEECCCC
PRLGKYHLTACSRCYAKYSPEEAKAFKWKCPKCGGRIKKGVHDRILELADTEERPKDRPP
CCCCHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC
YLRLAPLAEIIAMVIGKGVETKAVKAIWERFLKEFGSEIEVLVDVPIESLAEVHEEVAKA
CEEHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHH
VWAYRKGKLIVIPGGGGKYGEIKLPEEIRKARIDELESVEVKVPKEEYKPKQTSLMKFLK
HHHHCCCCEEEEECCCCCCCCEECHHHHHHHHHCCCCCCEEECCHHHCCCHHHHHHHHHC
N
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]