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The map label for this gene is rnhC [H]

Identifier: 209554110

GI number: 209554110

Start: 489391

End: 490344

Strand: Reverse

Name: rnhC [H]

Synonym: UUR10_0440

Alternate gene names: 209554110

Gene position: 490344-489391 (Counterclockwise)

Preceding gene: 209554612

Following gene: 209554206

Centisome position: 56.07

GC content: 24.11

Gene sequence:

>954_bases
ATGACAATTGTTTCAATTAAATTAACATCAAATCAAGTTGATCAACTCTTAGAATTATGAAAAACATATTTAGTACCTAA
TCATCACTATTATGCTAAATACACTTTTAATATTCAAAATACGCAAATTATTATTTATACTACTAATACTTGCACTATTA
ACACACATGATTTAGAACTTTTTTTAAATACCTTTTTAAAAAAAGAAGATTTAAATTTATTTAACTATATAAAACAACAA
TTAAATACTACAAAAAATAGTAAACAAAAAGTTTTAAGCGAAAGAGAAATTTATCAAAATAACCAAATTATTATTGGTTC
TGATGAAGTGGGAGTTGGAGATTTGTTTGGGGGAATAGTTGTATGTGCTGTAAGCTTAAAACAAAGTGATTTAAAATTCT
TAGCACATCTAAACATTGTTGATTCTAAAAAACTAAGTGATCACCAAATGCAAGAGATATATGAGAAAATTAAAAACCAA
ATTTCATACACAGTTTTATCTTATAATCCCAAAGAATACAACGAATTAATTAATCAATACAATAATGCTCATGTTCTTAA
AACTATTTTGCACTACAAAGCTGTGCAAAGTGAAATTGTCAAACACCAAAATTATTCAATTTTTAGTGTTGTTGATGCGT
TTAGTTCATTAAAAAATTGAAATCAATATTTACAAAAAGCACATCTAAAACCTTATGAACCTAACTTATTAATTCCCAAA
GCTGAATCATCTTATACTAGTGTAGCATTAGCTTCAATAATTGCACGTGTTATGTTTTTAAAAATGATTGCAATTATTGA
ACAAGAATTAAAAATAAAAATTCCTTTAGGAAGTTCAAATCTTTTAGTTAATACAACTGCCATGAGCATTTTTAAAAAAT
TTGGTATAAAAATTTTAAAGCAAATTGCTAAAGAACATTTCGCTAATTTTCAAGAAATTATTAAAAATAATTAA

Upstream 100 bases:

>100_bases
AAACTCCTAGTATTGAACTAATTTAGATTAATTATAAACAATATCAATACTTTTAAATTTATAATTTGTTATAAAATATT
AAAAGAAAGTCTTTTTCTTT

Downstream 100 bases:

>100_bases
AAAATTATCTTTTTTTAACTAATTCTTTTAGTATAAGAAAGGAAGTTTGTATTATGCAAAAAATGTCTAATAATTTTAAA
CAAGAATACTATGGCGGTTT

Product: ribonuclease HIII

Products: NA

Alternate protein names: RNase HIII [H]

Number of amino acids: Translated: 317; Mature: 316

Protein sequence:

>317_residues
MTIVSIKLTSNQVDQLLELWKTYLVPNHHYYAKYTFNIQNTQIIIYTTNTCTINTHDLELFLNTFLKKEDLNLFNYIKQQ
LNTTKNSKQKVLSEREIYQNNQIIIGSDEVGVGDLFGGIVVCAVSLKQSDLKFLAHLNIVDSKKLSDHQMQEIYEKIKNQ
ISYTVLSYNPKEYNELINQYNNAHVLKTILHYKAVQSEIVKHQNYSIFSVVDAFSSLKNWNQYLQKAHLKPYEPNLLIPK
AESSYTSVALASIIARVMFLKMIAIIEQELKIKIPLGSSNLLVNTTAMSIFKKFGIKILKQIAKEHFANFQEIIKNN

Sequences:

>Translated_317_residues
MTIVSIKLTSNQVDQLLEL*KTYLVPNHHYYAKYTFNIQNTQIIIYTTNTCTINTHDLELFLNTFLKKEDLNLFNYIKQQ
LNTTKNSKQKVLSEREIYQNNQIIIGSDEVGVGDLFGGIVVCAVSLKQSDLKFLAHLNIVDSKKLSDHQMQEIYEKIKNQ
ISYTVLSYNPKEYNELINQYNNAHVLKTILHYKAVQSEIVKHQNYSIFSVVDAFSSLKN*NQYLQKAHLKPYEPNLLIPK
AESSYTSVALASIIARVMFLKMIAIIEQELKIKIPLGSSNLLVNTTAMSIFKKFGIKILKQIAKEHFANFQEIIKNN
>Mature_316_residues
TIVSIKLTSNQVDQLLEL*KTYLVPNHHYYAKYTFNIQNTQIIIYTTNTCTINTHDLELFLNTFLKKEDLNLFNYIKQQL
NTTKNSKQKVLSEREIYQNNQIIIGSDEVGVGDLFGGIVVCAVSLKQSDLKFLAHLNIVDSKKLSDHQMQEIYEKIKNQI
SYTVLSYNPKEYNELINQYNNAHVLKTILHYKAVQSEIVKHQNYSIFSVVDAFSSLKN*NQYLQKAHLKPYEPNLLIPKA
ESSYTSVALASIIARVMFLKMIAIIEQELKIKIPLGSSNLLVNTTAMSIFKKFGIKILKQIAKEHFANFQEIIKNN

Specific function: Endonuclease that specifically degrades the RNA of RNA- DNA hybrids [H]

COG id: COG1039

COG function: function code L; Ribonuclease HIII

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNase HII family. RnhC subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001352
- InterPro:   IPR004641
- InterPro:   IPR012337 [H]

Pfam domain/function: PF01351 RNase_HII [H]

EC number: =3.1.26.4 [H]

Molecular weight: Translated: 36224; Mature: 36092

Theoretical pI: Translated: 9.53; Mature: 9.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIVSIKLTSNQVDQLLELKTYLVPNHHYYAKYTFNIQNTQIIIYTTNTCTINTHDLELF
CEEEEEEECHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCEEEEEECCEEEEEHHHHHHH
LNTFLKKEDLNLFNYIKQQLNTTKNSKQKVLSEREIYQNNQIIIGSDEVGVGDLFGGIVV
HHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHH
CAVSLKQSDLKFLAHLNIVDSKKLSDHQMQEIYEKIKNQISYTVLSYNPKEYNELINQYN
HHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHEEEEEEECHHHHHHHHHHCC
NAHVLKTILHYKAVQSEIVKHQNYSIFSVVDAFSSLKNNQYLQKAHLKPYEPNLLIPKAE
CHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHCCCCCCCCEEEECCC
SSYTSVALASIIARVMFLKMIAIIEQELKIKIPLGSSNLLVNTTAMSIFKKFGIKILKQI
CCHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEECCCCCEEEEHHHHHHHHHHHHHHHHHH
AKEHFANFQEIIKNN
HHHHHHHHHHHHCCC
>Mature Secondary Structure 
TIVSIKLTSNQVDQLLELKTYLVPNHHYYAKYTFNIQNTQIIIYTTNTCTINTHDLELF
EEEEEEECHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCEEEEEECCEEEEEHHHHHHH
LNTFLKKEDLNLFNYIKQQLNTTKNSKQKVLSEREIYQNNQIIIGSDEVGVGDLFGGIVV
HHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHH
CAVSLKQSDLKFLAHLNIVDSKKLSDHQMQEIYEKIKNQISYTVLSYNPKEYNELINQYN
HHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHEEEEEEECHHHHHHHHHHCC
NAHVLKTILHYKAVQSEIVKHQNYSIFSVVDAFSSLKNNQYLQKAHLKPYEPNLLIPKAE
CHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHCCCCCCCCEEEECCC
SSYTSVALASIIARVMFLKMIAIIEQELKIKIPLGSSNLLVNTTAMSIFKKFGIKILKQI
CCHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEECCCCCEEEEHHHHHHHHHHHHHHHHHH
AKEHFANFQEIIKNN
HHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA