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The map label for this gene is deoC [H]

Identifier: 209554016

GI number: 209554016

Start: 855628

End: 856275

Strand: Reverse

Name: deoC [H]

Synonym: UUR10_0689

Alternate gene names: 209554016

Gene position: 856275-855628 (Counterclockwise)

Preceding gene: 209554596

Following gene: 209554100

Centisome position: 97.92

GC content: 28.55

Gene sequence:

>648_bases
ATGAATAAATATAGTATTTACGTTGATCACACTTTATTAAAACCTGATGCAAGTTTAGATGAAATTCACAATTTATGCGA
AGAAGCTGAAGAAAATGAATTTTACTCAGTTTGTATTAACCCTTGTTTTATTAAAGTTGCCAAACATTATTTATTAGAAA
CACCTGTAAAAATTTGTACAGTTGTTGGTTTTCCACTAGGTGCTAATACAACTGAAACAAAAGTTTTTGAAACAAGAAAT
GCCATTGCTTTAGGTGCTGATGAGATTGATATGGTTATTAATATTAATCAACTAAAAAGTGCTAATCGTGAATATTGCTT
ACAAGAAATTAATGAAGTTAAAAAAGCGTGTAGTGATAAAGTTTTAAAAGTGATTGTTGAAACAGCACTTTTAGATCAAG
AACAAAAAGAATTTGCAGCTAGAATTATTTTAGAATCAGATGCTGATTTTATTAAAACATCAACTGGTTTTGCTAAAGAA
GGAGCAAAACTTGAGGATATTATTTTATGAAAGCAAATATTAGGTGATGCTAAACAAATTAAAGCTGCTGGAGGAATTAA
AAATCTTGATGATTTCAAAGCTTTTATTGATGCTGGAGCAACAAGAATTGGCACTTCATCAGCCATCAAAATATTAAATA
ATCAATAA

Upstream 100 bases:

>100_bases
TGGGCGTAGCGCAGATGGTAATAAATTAATGCACGAATTTGGTTTTAGTGTTGAAAACATTATCAATCAACTTTTAAATA
AAAAATAAGGAAATATTTTT

Downstream 100 bases:

>100_bases
ATTAAATTTTTAGAGAAAGGTTTTTAGTTGCTTAAAAACCTTTTTTATTTATCTAAAATAGAAATATTACTTTAAAAAGT
ATATAAAAGTCCTATTGTTC

Product: deoxyribose-phosphate aldolase

Products: NA

Alternate protein names: Phosphodeoxyriboaldolase; DERA; Deoxyriboaldolase [H]

Number of amino acids: Translated: 215; Mature: 215

Protein sequence:

>215_residues
MNKYSIYVDHTLLKPDASLDEIHNLCEEAEENEFYSVCINPCFIKVAKHYLLETPVKICTVVGFPLGANTTETKVFETRN
AIALGADEIDMVININQLKSANREYCLQEINEVKKACSDKVLKVIVETALLDQEQKEFAARIILESDADFIKTSTGFAKE
GAKLEDIILWKQILGDAKQIKAAGGIKNLDDFKAFIDAGATRIGTSSAIKILNNQ

Sequences:

>Translated_215_residues
MNKYSIYVDHTLLKPDASLDEIHNLCEEAEENEFYSVCINPCFIKVAKHYLLETPVKICTVVGFPLGANTTETKVFETRN
AIALGADEIDMVININQLKSANREYCLQEINEVKKACSDKVLKVIVETALLDQEQKEFAARIILESDADFIKTSTGFAKE
GAKLEDIIL*KQILGDAKQIKAAGGIKNLDDFKAFIDAGATRIGTSSAIKILNNQ
>Mature_215_residues
MNKYSIYVDHTLLKPDASLDEIHNLCEEAEENEFYSVCINPCFIKVAKHYLLETPVKICTVVGFPLGANTTETKVFETRN
AIALGADEIDMVININQLKSANREYCLQEINEVKKACSDKVLKVIVETALLDQEQKEFAARIILESDADFIKTSTGFAKE
GAKLEDIIL*KQILGDAKQIKAAGGIKNLDDFKAFIDAGATRIGTSSAIKILNNQ

Specific function: Nucleotide and deoxyribonucleotide catabolism. [C]

COG id: COG0274

COG function: function code F; Deoxyribose-phosphate aldolase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the deoC/fbaB aldolase family. DeoC type 1 subfamily [H]

Homologues:

Organism=Homo sapiens, GI116063554, Length=219, Percent_Identity=28.7671232876712, Blast_Score=69, Evalue=2e-12,
Organism=Escherichia coli, GI1790841, Length=202, Percent_Identity=33.1683168316832, Blast_Score=84, Evalue=6e-18,
Organism=Caenorhabditis elegans, GI17533015, Length=208, Percent_Identity=29.3269230769231, Blast_Score=64, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR011343
- InterPro:   IPR002915
- InterPro:   IPR022979 [H]

Pfam domain/function: PF01791 DeoC [H]

EC number: =4.1.2.4 [H]

Molecular weight: Translated: 23656; Mature: 23656

Theoretical pI: Translated: 4.77; Mature: 4.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKYSIYVDHTLLKPDASLDEIHNLCEEAEENEFYSVCINPCFIKVAKHYLLETPVKICT
CCCEEEEEEEEEECCCCCHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHCHHHHHH
VVGFPLGANTTETKVFETRNAIALGADEIDMVININQLKSANREYCLQEINEVKKACSDK
HHCCCCCCCCCHHHHHHCCCCEEECCCCEEEEEEHHHHHCCCHHHHHHHHHHHHHHHHHH
VLKVIVETALLDQEQKEFAARIILESDADFIKTSTGFAKEGAKLEDIILKQILGDAKQIK
HHHHHHHHHHHCHHHHHHHHHHHHCCCCCHHHCCCCCHHCCCHHHHHHHHHHHCHHHHHH
AAGGIKNLDDFKAFIDAGATRIGTSSAIKILNNQ
HHCCCCCHHHHHHHHHCCCHHCCCHHHHHEECCC
>Mature Secondary Structure
MNKYSIYVDHTLLKPDASLDEIHNLCEEAEENEFYSVCINPCFIKVAKHYLLETPVKICT
CCCEEEEEEEEEECCCCCHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHCHHHHHH
VVGFPLGANTTETKVFETRNAIALGADEIDMVININQLKSANREYCLQEINEVKKACSDK
HHCCCCCCCCCHHHHHHCCCCEEECCCCEEEEEEHHHHHCCCHHHHHHHHHHHHHHHHHH
VLKVIVETALLDQEQKEFAARIILESDADFIKTSTGFAKEGAKLEDIILKQILGDAKQIK
HHHHHHHHHHHCHHHHHHHHHHHHCCCCCHHHCCCCCHHCCCHHHHHHHHHHHCHHHHHH
AAGGIKNLDDFKAFIDAGATRIGTSSAIKILNNQ
HHCCCCCHHHHHHHHHCCCHHCCCHHHHHEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA