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The map label for this gene is lrpC [H]

Identifier: 209551911

GI number: 209551911

Start: 4509673

End: 4510137

Strand: Direct

Name: lrpC [H]

Synonym: Rleg2_4344

Alternate gene names: 209551911

Gene position: 4509673-4510137 (Clockwise)

Preceding gene: 209551909

Following gene: 209551914

Centisome position: 99.38

GC content: 64.73

Gene sequence:

>465_bases
ATGCCTAATGATGCGCAATCGCTCGACGAAACCGATCAGGCCATTCTGGAGGCGCTGGCCGGCAACGCCCGCATCTCGCT
GAAGGAGCTGGCGCAGCAGGTGGGGCTTTCCTCGCCAAGTGCGGCCGAGCGCCTGCGGCGGCTGGAGGAGCGCGGCGTCA
TCAAGGCCTTCACCATCGATCTCGATCCTGCCGCCGTCGGCTACCCCCTGCAGGCGATCGTCCGTGTGCGGCCGTTGCCG
GGACAGCTGCACATCGTCGAGCGGCTTATCCAGGAGATTCCCGAAATCGTCGAATGCGACAAGGTCACCGGCGAGGATTG
TTTCATCGCCCGCCTGGTCATCCGCTCGATGGCGGAGCTCGACGGTCTCCTCGACAGGGTCGCCGAGCGGGCGGAAACCA
ACACCGCGATGATCAAAGCCTCGCCCGTCAAACGCCGCCTGCCGCCGCTGTCACGGAAAAAGTAA

Upstream 100 bases:

>100_bases
TTTCTATGACATCAGAATATTGCGGAGGTGCACGATTTTATATAGTTATAAAAAGGAGTATGATCTAAATCACCTAATCA
TATGAGGAAAGAAAGAGACT

Downstream 100 bases:

>100_bases
GGCGGCGAACGAGTGCATGTCGCCCGGAAGTGTGCAGCGATTCCCAACGACATACATCAAAACAAAGAGCTTTAGAAATC
CGCCATCGGCGACAGCATCG

Product: AsnC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 154; Mature: 153

Protein sequence:

>154_residues
MPNDAQSLDETDQAILEALAGNARISLKELAQQVGLSSPSAAERLRRLEERGVIKAFTIDLDPAAVGYPLQAIVRVRPLP
GQLHIVERLIQEIPEIVECDKVTGEDCFIARLVIRSMAELDGLLDRVAERAETNTAMIKASPVKRRLPPLSRKK

Sequences:

>Translated_154_residues
MPNDAQSLDETDQAILEALAGNARISLKELAQQVGLSSPSAAERLRRLEERGVIKAFTIDLDPAAVGYPLQAIVRVRPLP
GQLHIVERLIQEIPEIVECDKVTGEDCFIARLVIRSMAELDGLLDRVAERAETNTAMIKASPVKRRLPPLSRKK
>Mature_153_residues
PNDAQSLDETDQAILEALAGNARISLKELAQQVGLSSPSAAERLRRLEERGVIKAFTIDLDPAAVGYPLQAIVRVRPLPG
QLHIVERLIQEIPEIVECDKVTGEDCFIARLVIRSMAELDGLLDRVAERAETNTAMIKASPVKRRLPPLSRKK

Specific function: Transcriptional regulator with a possible role in regulation of amino acid metabolism. Plays a role in the growth phase transition [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH asnC-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790182, Length=151, Percent_Identity=28.476821192053, Blast_Score=67, Evalue=4e-13,
Organism=Escherichia coli, GI1787116, Length=123, Percent_Identity=32.520325203252, Blast_Score=63, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011008
- InterPro:   IPR000485
- InterPro:   IPR000835
- InterPro:   IPR019888
- InterPro:   IPR019887
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01037 AsnC_trans_reg; PF01047 MarR [H]

EC number: NA

Molecular weight: Translated: 16986; Mature: 16855

Theoretical pI: Translated: 6.00; Mature: 6.00

Prosite motif: PS00519 HTH_ASNC_1 ; PS50956 HTH_ASNC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPNDAQSLDETDQAILEALAGNARISLKELAQQVGLSSPSAAERLRRLEERGVIKAFTID
CCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEEEE
LDPAAVGYPLQAIVRVRPLPGQLHIVERLIQEIPEIVECDKVTGEDCFIARLVIRSMAEL
CCCCHHCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
DGLLDRVAERAETNTAMIKASPVKRRLPPLSRKK
HHHHHHHHHHHHCCHHEEECCCHHHHCCCCCCCC
>Mature Secondary Structure 
PNDAQSLDETDQAILEALAGNARISLKELAQQVGLSSPSAAERLRRLEERGVIKAFTID
CCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEEEE
LDPAAVGYPLQAIVRVRPLPGQLHIVERLIQEIPEIVECDKVTGEDCFIARLVIRSMAEL
CCCCHHCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
DGLLDRVAERAETNTAMIKASPVKRRLPPLSRKK
HHHHHHHHHHHHCCHHEEECCCHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377; 9341680 [H]