Definition Rhizobium leguminosarum bv. trifolii WSM2304 chromosome, complete genome.
Accession NC_011369
Length 4,537,948

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The map label for this gene is dps [H]

Identifier: 209551909

GI number: 209551909

Start: 4508093

End: 4508611

Strand: Direct

Name: dps [H]

Synonym: Rleg2_4342

Alternate gene names: 209551909

Gene position: 4508093-4508611 (Clockwise)

Preceding gene: 209551906

Following gene: 209551911

Centisome position: 99.34

GC content: 61.46

Gene sequence:

>519_bases
ATGTCCCCGACCTCAGCCGAAACCCGCAGGCTCTCGCCGCTCAAGACGCCTTCCACCCTGCCGACCAACGCCGTCACCGA
TATTTCGGCGGCGCTGACCGCGCTGCTTGCCGATGTCTTCGCGCTTTATATGAAAACCAAGAACTTCCATTGGCACATGT
CCGGCCCGCATTTCCGCGATTATCATCTGCTGCTCGATGAACAGGCGGAGCAGATCTTCGCGATGACCGACGACATTGCC
GAGCGCGCCCGCAAGATCGGCGGCGTGACGCTGCGCTCCATTGGCCAGATCTCCCGCCAGCAGCGCATCGCCGACAATGA
CGCGGATTTCGTCACGCCCGAGGACATGCTGTCGGAACTGCGCGAGGATAACGGTCAGCTCGTTTCGCTGCTGCGCGAGG
TGCACGATCTCTGCGACGAGCACAATGATGTCGCGACCGCCAGCCTGATCGAGAACTGGATCGACGAGTCCGAGCGCCGC
ACCTGGTTCCTGTTCGAAACGACCCGGCGGCAGAAATAA

Upstream 100 bases:

>100_bases
CTTGCTAGTTCTCTTTCTGCACGCGCGCCGCGACCGTCCTTTGGGCCTCTCGAACAGGCGCGCGGCGCTCTCGAGATTTT
GATCACCAAGGAGAGAATTG

Downstream 100 bases:

>100_bases
TATCAGCAGTCGGGGCGTGGTGTCATCTGTGCGGCACGCCCGGCTCTCAGCCTTGGAGTGCCCGCGGCCGCAGCCATCTT
GGGCTCCAGCCGAGGTTCAT

Product: ferritin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 172; Mature: 171

Protein sequence:

>172_residues
MSPTSAETRRLSPLKTPSTLPTNAVTDISAALTALLADVFALYMKTKNFHWHMSGPHFRDYHLLLDEQAEQIFAMTDDIA
ERARKIGGVTLRSIGQISRQQRIADNDADFVTPEDMLSELREDNGQLVSLLREVHDLCDEHNDVATASLIENWIDESERR
TWFLFETTRRQK

Sequences:

>Translated_172_residues
MSPTSAETRRLSPLKTPSTLPTNAVTDISAALTALLADVFALYMKTKNFHWHMSGPHFRDYHLLLDEQAEQIFAMTDDIA
ERARKIGGVTLRSIGQISRQQRIADNDADFVTPEDMLSELREDNGQLVSLLREVHDLCDEHNDVATASLIENWIDESERR
TWFLFETTRRQK
>Mature_171_residues
SPTSAETRRLSPLKTPSTLPTNAVTDISAALTALLADVFALYMKTKNFHWHMSGPHFRDYHLLLDEQAEQIFAMTDDIAE
RARKIGGVTLRSIGQISRQQRIADNDADFVTPEDMLSELREDNGQLVSLLREVHDLCDEHNDVATASLIENWIDESERRT
WFLFETTRRQK

Specific function: Protects DNA from oxidative damage by sequestering intracellular Fe(2+) ion and storing it in the form of Fe(3+) oxyhydroxide mineral, which can be released after reduction. It efficiently inhibits hydroxyl radical production by the Fenton reaction. Does

COG id: COG0783

COG function: function code P; DNA-binding ferritin-like protein (oxidative damage protectant)

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dps family [H]

Homologues:

None

Paralogues:

None

Copy number: 6720 Molecules/Cell In: Early Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002177
- InterPro:   IPR023188
- InterPro:   IPR012347
- InterPro:   IPR009078
- InterPro:   IPR008331 [H]

Pfam domain/function: PF00210 Ferritin [H]

EC number: NA

Molecular weight: Translated: 19687; Mature: 19556

Theoretical pI: Translated: 4.91; Mature: 4.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSPTSAETRRLSPLKTPSTLPTNAVTDISAALTALLADVFALYMKTKNFHWHMSGPHFRD
CCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCH
YHLLLDEQAEQIFAMTDDIAERARKIGGVTLRSIGQISRQQRIADNDADFVTPEDMLSEL
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
REDNGQLVSLLREVHDLCDEHNDVATASLIENWIDESERRTWFLFETTRRQK
HHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCC
>Mature Secondary Structure 
SPTSAETRRLSPLKTPSTLPTNAVTDISAALTALLADVFALYMKTKNFHWHMSGPHFRD
CCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCH
YHLLLDEQAEQIFAMTDDIAERARKIGGVTLRSIGQISRQQRIADNDADFVTPEDMLSEL
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
REDNGQLVSLLREVHDLCDEHNDVATASLIENWIDESERRTWFLFETTRRQK
HHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11743193; 11743194 [H]