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The map label for this gene is rbsR [H]

Identifier: 209551900

GI number: 209551900

Start: 4497392

End: 4498414

Strand: Reverse

Name: rbsR [H]

Synonym: Rleg2_4333

Alternate gene names: 209551900

Gene position: 4498414-4497392 (Counterclockwise)

Preceding gene: 209551907

Following gene: 209551896

Centisome position: 99.13

GC content: 61.49

Gene sequence:

>1023_bases
ATGTCAAAGGTCGGAATCAGGGATGTTGCCAAGCTTGCGGGTGTTTCCACCGGCACCGTTTCCAGGGTTTTGAACGATCA
TCCCTCCGTGACCAAGGACGTGCGGGCACGCGTCGAAGGGATCATCAAGGAGCTGGGTTATCTGCCCGACCCGTCGGCAA
GAAGCATGCGCAGCAAGGTCAGCCGCCTGATCGGCATCGTCATTCCGGATCTGACCAATCCGTTCTTCTCCGAACTCGTG
CAATCGGCGGAACAGGCGGCGGCCAATCACGGCTACAATATCATCGTCATGACCTCGCTTGATCATGCGGCCAAGGAAGC
CGATCGGATCAAGCAGCTGACGAGCCGGAAGGTCGACGGTATCATTCTCGTTCCCAGCAATGATTTTCATACGCTCAAGC
TGCCGAAAGGATTGCCGATCGTCGTCGTCGACCGGCTGATGCCGGGATATTCCGGCATTGCCGCCGATCACCGCAATGGC
GTTCGCTTGGGCGTCGAGCACCTTCTGAAACTCGGTCATCGCCGCATCGGCTTCATCTCCGGGCCCGGACATTCCGTCCC
CGCCAATGACCGCCTCAGGGGGTATCTCGACGCAATCGAGCATGCGGGGGAACAGGCGGACGGCAGCGCGAAAATGGCAG
GACCGCCGCTGATTGCCGAGGCGGCTTTCGATTACGAGAGCGGGCGCTCGGCAGGAAATTATCTTCTGGCCCGGGCGCGC
AACGAGCGGCCGACGGCGATCTTTGCCAGCTCGGACCAGCAGGCGATCGGCTGCATGCGGGCGGCGCATGATCTGGGAAT
TCCGGTTCCTGCAGCTCTTTCCATCGTCGGCTTCGACGGTATCCCGCTCGCCAGCATGACGACGCCACGGCTGACGACAG
TGAAGCAGCCGATCCAGGACGTCGCCGCCGCCGCGGTCGCCGTTCTGCTGAACAAGCAGACCGCGCCCGAACTCGACGAT
CCGATCCTGTTTGCCTGCGAGGTTTTAGAGGGGGAAACGACCGCCCCGCCTCAGCCGGATTAA

Upstream 100 bases:

>100_bases
GTCCCTTTGACTAGGGGCCTGAAGACCATTAGCTGGAAGCCAGGATCAGGCGCCCTCGGGCGTCTTGCGCAGGCGAAGAT
GAAGGGCATCTATTTCTGTC

Downstream 100 bases:

>100_bases
TGCATGTCGCCCGGAAGTGTGCAGCGGTTCCGGGATAACGACATGCATAAAAACAAAAAGCTAAAGCACATAACCGGCTG
CGCTGTTCAGGCGGCGATGC

Product: LacI family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 340; Mature: 339

Protein sequence:

>340_residues
MSKVGIRDVAKLAGVSTGTVSRVLNDHPSVTKDVRARVEGIIKELGYLPDPSARSMRSKVSRLIGIVIPDLTNPFFSELV
QSAEQAAANHGYNIIVMTSLDHAAKEADRIKQLTSRKVDGIILVPSNDFHTLKLPKGLPIVVVDRLMPGYSGIAADHRNG
VRLGVEHLLKLGHRRIGFISGPGHSVPANDRLRGYLDAIEHAGEQADGSAKMAGPPLIAEAAFDYESGRSAGNYLLARAR
NERPTAIFASSDQQAIGCMRAAHDLGIPVPAALSIVGFDGIPLASMTTPRLTTVKQPIQDVAAAAVAVLLNKQTAPELDD
PILFACEVLEGETTAPPQPD

Sequences:

>Translated_340_residues
MSKVGIRDVAKLAGVSTGTVSRVLNDHPSVTKDVRARVEGIIKELGYLPDPSARSMRSKVSRLIGIVIPDLTNPFFSELV
QSAEQAAANHGYNIIVMTSLDHAAKEADRIKQLTSRKVDGIILVPSNDFHTLKLPKGLPIVVVDRLMPGYSGIAADHRNG
VRLGVEHLLKLGHRRIGFISGPGHSVPANDRLRGYLDAIEHAGEQADGSAKMAGPPLIAEAAFDYESGRSAGNYLLARAR
NERPTAIFASSDQQAIGCMRAAHDLGIPVPAALSIVGFDGIPLASMTTPRLTTVKQPIQDVAAAAVAVLLNKQTAPELDD
PILFACEVLEGETTAPPQPD
>Mature_339_residues
SKVGIRDVAKLAGVSTGTVSRVLNDHPSVTKDVRARVEGIIKELGYLPDPSARSMRSKVSRLIGIVIPDLTNPFFSELVQ
SAEQAAANHGYNIIVMTSLDHAAKEADRIKQLTSRKVDGIILVPSNDFHTLKLPKGLPIVVVDRLMPGYSGIAADHRNGV
RLGVEHLLKLGHRRIGFISGPGHSVPANDRLRGYLDAIEHAGEQADGSAKMAGPPLIAEAAFDYESGRSAGNYLLARARN
ERPTAIFASSDQQAIGCMRAAHDLGIPVPAALSIVGFDGIPLASMTTPRLTTVKQPIQDVAAAAVAVLLNKQTAPELDDP
ILFACEVLEGETTAPPQPD

Specific function: Transcriptional repressor for the ribose rbsDACBK operon [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lacI-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790369, Length=339, Percent_Identity=33.9233038348083, Blast_Score=179, Evalue=2e-46,
Organism=Escherichia coli, GI1789202, Length=305, Percent_Identity=35.0819672131148, Blast_Score=178, Evalue=5e-46,
Organism=Escherichia coli, GI1790194, Length=321, Percent_Identity=33.6448598130841, Blast_Score=171, Evalue=5e-44,
Organism=Escherichia coli, GI1788474, Length=314, Percent_Identity=35.031847133758, Blast_Score=167, Evalue=1e-42,
Organism=Escherichia coli, GI1787948, Length=328, Percent_Identity=30.4878048780488, Blast_Score=149, Evalue=3e-37,
Organism=Escherichia coli, GI1789068, Length=338, Percent_Identity=28.9940828402367, Blast_Score=139, Evalue=2e-34,
Organism=Escherichia coli, GI1786540, Length=344, Percent_Identity=29.9418604651163, Blast_Score=130, Evalue=1e-31,
Organism=Escherichia coli, GI48994940, Length=314, Percent_Identity=27.7070063694268, Blast_Score=114, Evalue=1e-26,
Organism=Escherichia coli, GI1787580, Length=320, Percent_Identity=27.8125, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI1787906, Length=199, Percent_Identity=29.1457286432161, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1790715, Length=320, Percent_Identity=25.3125, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1790689, Length=295, Percent_Identity=25.7627118644068, Blast_Score=92, Evalue=6e-20,
Organism=Escherichia coli, GI1786268, Length=328, Percent_Identity=25.9146341463415, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1789456, Length=320, Percent_Identity=26.25, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1790192, Length=229, Percent_Identity=26.6375545851528, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000843
- InterPro:   IPR010982
- InterPro:   IPR001761 [H]

Pfam domain/function: PF00356 LacI; PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 36168; Mature: 36037

Theoretical pI: Translated: 7.37; Mature: 7.37

Prosite motif: PS00356 HTH_LACI_1 ; PS50932 HTH_LACI_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKVGIRDVAKLAGVSTGTVSRVLNDHPSVTKDVRARVEGIIKELGYLPDPSARSMRSKV
CCCCCHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
SRLIGIVIPDLTNPFFSELVQSAEQAAANHGYNIIVMTSLDHAAKEADRIKQLTSRKVDG
HHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHCCCCE
IILVPSNDFHTLKLPKGLPIVVVDRLMPGYSGIAADHRNGVRLGVEHLLKLGHRRIGFIS
EEEEECCCCEEEECCCCCCEEEHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEC
GPGHSVPANDRLRGYLDAIEHAGEQADGSAKMAGPPLIAEAAFDYESGRSAGNYLLARAR
CCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCEEECC
NERPTAIFASSDQQAIGCMRAAHDLGIPVPAALSIVGFDGIPLASMTTPRLTTVKQPIQD
CCCCCEEEECCCHHHHHHHHHHHHCCCCCHHHHEEECCCCCCCCCCCCCCHHHHHHHHHH
VAAAAVAVLLNKQTAPELDDPILFACEVLEGETTAPPQPD
HHHHHHHHHHCCCCCCCCCCCCEEEEEHHCCCCCCCCCCC
>Mature Secondary Structure 
SKVGIRDVAKLAGVSTGTVSRVLNDHPSVTKDVRARVEGIIKELGYLPDPSARSMRSKV
CCCCHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
SRLIGIVIPDLTNPFFSELVQSAEQAAANHGYNIIVMTSLDHAAKEADRIKQLTSRKVDG
HHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHCCCCE
IILVPSNDFHTLKLPKGLPIVVVDRLMPGYSGIAADHRNGVRLGVEHLLKLGHRRIGFIS
EEEEECCCCEEEECCCCCCEEEHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEC
GPGHSVPANDRLRGYLDAIEHAGEQADGSAKMAGPPLIAEAAFDYESGRSAGNYLLARAR
CCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCEEECC
NERPTAIFASSDQQAIGCMRAAHDLGIPVPAALSIVGFDGIPLASMTTPRLTTVKQPIQD
CCCCCEEEECCCHHHHHHHHHHHHCCCCCHHHHEEECCCCCCCCCCCCCCHHHHHHHHHH
VAAAAVAVLLNKQTAPELDDPILFACEVLEGETTAPPQPD
HHHHHHHHHHCCCCCCCCCCCCEEEEEHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11058132 [H]