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The map label for this gene is yliC [C]

Identifier: 209551771

GI number: 209551771

Start: 4374063

End: 4375010

Strand: Reverse

Name: yliC [C]

Synonym: Rleg2_4200

Alternate gene names: 209551771

Gene position: 4375010-4374063 (Counterclockwise)

Preceding gene: 209551772

Following gene: 209551770

Centisome position: 96.41

GC content: 64.35

Gene sequence:

>948_bases
ATGATCGCACTCCTCGCCCGCCGCTTCGCCGGTCTCCTTGTCACGCTCCTCATCGTCTCGCTGCTGATCTTCACTGTCAT
GGATCTGCTGCCCGGCGATCCCGCCTCGATCATGCTCGGCACTTCGGCAAGCCCGGAAACCTTGGCGGCGTTGCGTCACG
ATCTGGGGCTCGATCAGCCGCTCATCCTGCGTTACGGCCAATGGCTGGCCGGCCTATTCTCCGGGGATCTCGGCCAATCC
TACACCTATGGCGTCCCCGTCGCCGGACTGATCGTCGAGCGGCTGGCGGTAACGTTGCCACTGGCGCTGATGGCGGTCGT
TCTTTCGGTCGCGATTGCCCTGCCGCTTGGGGTGCTGGCCGCAGCGCGCCGCGGCGGTCTCTTCGACATCATCGCCACGC
TGTTTTCGCAAATCGGCATTGCCGTGCCGGCCTTCTGGGTGGCGCTGCTGCTGATCATCCTGTTTTCGACGATGCTCGGG
CTGATGCCGGCCGGCGGCTTCCCGGGCTGGAGTGCCGGTCTGCTGCTGGCATTGCAGGCGCTTGCCATGCCGGCCGTCGC
GCTGGCGATGCCGCAGGCCGGCGTGTTGACGCGGGTGGCGCGATCGGCGGTGCTCGAGACGATGCATGAGGATTTTGCTC
GCACTGCCGTCGCAAAAGGACTTTCTCGCAGCGTGGTGCTGTGGCGGCATGTCGTGCCGAACGCGCTGATCCCGATCCTC
ACCATGATCGGGCTGCAATTCACCTTTCTCGTTGCCGGCGCGGTGCTGGTGGAAAACGTCTTCAACCTGCCCGGCCTCGG
GCGACTGGCGCTGCAGGCGCTCGCCCAGCGCGACATCATCGTCATGCAGGATGTCGTGCTGTTCTTCGCCGCCCTCGTCA
TCGTCGTGAATTTCGTGATCGATCTCTCCTATCTGGCGATCGATCCCAGGATGAGAAAGGCGGCTTGA

Upstream 100 bases:

>100_bases
GCTCAAGGCCGAGCATGACGGAGAGTGGGGTTGGCTTTCTTGCCAAACCGGCCGCCAGCGCATCGGAGAGCCGCAGTACC
ACCCCGCCAGCGTGGCCCGC

Downstream 100 bases:

>100_bases
GGCATGGCTCCCGTCGTTTCCAGCGCCTTTGCCAGCCGCATAGTTTTTAAACTTAGCCGGAGAATGAACCTGGTTTGCGG
GGCGGTGATTATCGGGCTGC

Product: binding-protein-dependent transporters inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 315; Mature: 315

Protein sequence:

>315_residues
MIALLARRFAGLLVTLLIVSLLIFTVMDLLPGDPASIMLGTSASPETLAALRHDLGLDQPLILRYGQWLAGLFSGDLGQS
YTYGVPVAGLIVERLAVTLPLALMAVVLSVAIALPLGVLAAARRGGLFDIIATLFSQIGIAVPAFWVALLLIILFSTMLG
LMPAGGFPGWSAGLLLALQALAMPAVALAMPQAGVLTRVARSAVLETMHEDFARTAVAKGLSRSVVLWRHVVPNALIPIL
TMIGLQFTFLVAGAVLVENVFNLPGLGRLALQALAQRDIIVMQDVVLFFAALVIVVNFVIDLSYLAIDPRMRKAA

Sequences:

>Translated_315_residues
MIALLARRFAGLLVTLLIVSLLIFTVMDLLPGDPASIMLGTSASPETLAALRHDLGLDQPLILRYGQWLAGLFSGDLGQS
YTYGVPVAGLIVERLAVTLPLALMAVVLSVAIALPLGVLAAARRGGLFDIIATLFSQIGIAVPAFWVALLLIILFSTMLG
LMPAGGFPGWSAGLLLALQALAMPAVALAMPQAGVLTRVARSAVLETMHEDFARTAVAKGLSRSVVLWRHVVPNALIPIL
TMIGLQFTFLVAGAVLVENVFNLPGLGRLALQALAQRDIIVMQDVVLFFAALVIVVNFVIDLSYLAIDPRMRKAA
>Mature_315_residues
MIALLARRFAGLLVTLLIVSLLIFTVMDLLPGDPASIMLGTSASPETLAALRHDLGLDQPLILRYGQWLAGLFSGDLGQS
YTYGVPVAGLIVERLAVTLPLALMAVVLSVAIALPLGVLAAARRGGLFDIIATLFSQIGIAVPAFWVALLLIILFSTMLG
LMPAGGFPGWSAGLLLALQALAMPAVALAMPQAGVLTRVARSAVLETMHEDFARTAVAKGLSRSVVLWRHVVPNALIPIL
TMIGLQFTFLVAGAVLVENVFNLPGLGRLALQALAQRDIIVMQDVVLFFAALVIVVNFVIDLSYLAIDPRMRKAA

Specific function: Probably part of an ABC transporter complex that could be involved in peptide import. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787053, Length=312, Percent_Identity=37.8205128205128, Blast_Score=211, Evalue=5e-56,
Organism=Escherichia coli, GI1789965, Length=339, Percent_Identity=36.283185840708, Blast_Score=209, Evalue=1e-55,
Organism=Escherichia coli, GI1789888, Length=316, Percent_Identity=35.126582278481, Blast_Score=181, Evalue=6e-47,
Organism=Escherichia coli, GI1787497, Length=313, Percent_Identity=30.6709265175719, Blast_Score=161, Evalue=6e-41,
Organism=Escherichia coli, GI1787761, Length=340, Percent_Identity=34.4117647058824, Blast_Score=160, Evalue=1e-40,
Organism=Escherichia coli, GI1788504, Length=284, Percent_Identity=31.3380281690141, Blast_Score=137, Evalue=6e-34,
Organism=Escherichia coli, GI1787550, Length=269, Percent_Identity=28.2527881040892, Blast_Score=125, Evalue=4e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 33348; Mature: 33348

Theoretical pI: Translated: 9.59; Mature: 9.59

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIALLARRFAGLLVTLLIVSLLIFTVMDLLPGDPASIMLGTSASPETLAALRHDLGLDQP
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCHHHHHHHHHHCCCCCH
LILRYGQWLAGLFSGDLGQSYTYGVPVAGLIVERLAVTLPLALMAVVLSVAIALPLGVLA
HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AARRGGLFDIIATLFSQIGIAVPAFWVALLLIILFSTMLGLMPAGGFPGWSAGLLLALQA
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
LAMPAVALAMPQAGVLTRVARSAVLETMHEDFARTAVAKGLSRSVVLWRHVVPNALIPIL
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TMIGLQFTFLVAGAVLVENVFNLPGLGRLALQALAQRDIIVMQDVVLFFAALVIVVNFVI
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
DLSYLAIDPRMRKAA
HHHHHHCCCHHHHCC
>Mature Secondary Structure
MIALLARRFAGLLVTLLIVSLLIFTVMDLLPGDPASIMLGTSASPETLAALRHDLGLDQP
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCHHHHHHHHHHCCCCCH
LILRYGQWLAGLFSGDLGQSYTYGVPVAGLIVERLAVTLPLALMAVVLSVAIALPLGVLA
HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AARRGGLFDIIATLFSQIGIAVPAFWVALLLIILFSTMLGLMPAGGFPGWSAGLLLALQA
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
LAMPAVALAMPQAGVLTRVARSAVLETMHEDFARTAVAKGLSRSVVLWRHVVPNALIPIL
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TMIGLQFTFLVAGAVLVENVFNLPGLGRLALQALAQRDIIVMQDVVLFFAALVIVVNFVI
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
DLSYLAIDPRMRKAA
HHHHHHCCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11756688 [H]