| Definition | Rhizobium leguminosarum bv. trifolii WSM2304 chromosome, complete genome. |
|---|---|
| Accession | NC_011369 |
| Length | 4,537,948 |
Click here to switch to the map view.
The map label for this gene is gsiB [H]
Identifier: 209551772
GI number: 209551772
Start: 4375382
End: 4376908
Strand: Reverse
Name: gsiB [H]
Synonym: Rleg2_4201
Alternate gene names: 209551772
Gene position: 4376908-4375382 (Counterclockwise)
Preceding gene: 209551773
Following gene: 209551771
Centisome position: 96.45
GC content: 62.08
Gene sequence:
>1527_bases ATGATCAAGGTTTCCTTCGTACCGGCGCGCTTCGCCGGGCAACTTTCCCTCAGGGCGGCGCTTGCTGCGGGACTTATGAT GGCGGCGATGGCGCCGGCCGAGGCAGCGAAGACCACTTTCACTCTCGGCATGAGCGTCGAGCCGACCGGCCTCGATCCGA CGATCGCGGCACCGGTGGCGATCGGCCAGGTGACCTGGCAGAACGTGTTCGAGGGACTGGTGACGATCGACCAGGCCGGC AAGATCCAGCCGCAGCTGGCAAAAAGCTGGGAGATTTCGCCTGACGGCCTGACCTATACGTTCAAGCTGCAGACCGGCGT CACATTCCATGACGGCGAGGTCTTCGATGCCGCCAGCGCCAAGTTTACGCTCGACCGCGCCCGCGGCGCGGATTCGGTCA ATCCGCAGAAACGCTTCTTCGCCTCGATCGCTTCGATCGATACGCCCGATGCCGAAACGCTGGTGCTGCATCTTTCGGCG CCGACCGGCAGCCTGATCTACTGGCTCGGCTGGCCGGCCTCGGTGATGGTCGCGCCCAAGACCGCGGCCGACGACAAGGC GACGCCGATCGGCACCGGCCCCTTCAAATTTGTCGGCTGGGCGAAGGGCGACAAGGTCGAACTGGAAAAGAATGCCGATT ACTGGAACAAGGCTGCGGCCGCCAAGCTCGACAAGGTGACCTTCCGCTTTATCGCCGATCCGCAGGCGCAGGCGGCTGCG CTGAAATCCGGCGATCTCGATGCCCTTCCGGAATTTGCCGCACCGGAGCTGATGAGTTCTTTCGAGGGCGATGCAAGGCT TGTCACCAGGATCGGCAATACCGAGCTCAAGGTCGTCGCCGGCATGAACAATGCCAGGAAGCCGTTCGACGACAAACGCG TGCGCCAGGCGCTGATGATGGCGATCGACCGCAAGACGGTGATCGACGGCGCATGGTCCGGCCTCGGCACGCCGATCGGC AGCCATTACACGCCGAACGATCCCGGCTATCAGGATATGACGGGCGTGCTGCCTTACGATGTCGAGAAGGCGAAGGCGCT GCTGGCAGAAGCCGGCTATCCCAACGGCTTCACCTTCACGATCAAATCGCCGCAGATGGCCTATGCGCCGCGCAGCGCTG AGGTAATGCAGGCGATGTTTGCCGAGATCGGCGTGACGATGAATATCGAGCCGACCGAGTTTCCGGCAAAATGGGTCCAG GACATCATGAAGGACCGCAACTTCGACATGACGATCGTCGCCCATGCCGAGCCGCTCGACATCGACATCTACGGGCGCGA TCCCTATTATTTCAACTATAAGAACCCGGTGTTTACCGCGCTGATGAAGAAGGTCCAGGAGACCGCCGATCCCGCCACGC AGAACGCGATCTACGGCGAGACGCAGAAGATCCTCGCCGAGGACGTGCCGGCGCTCTACCTCTTCGTCATGCCGAAACTC GGCGTCTGGGACGGAAAGCTGAAGGGGTTGTGGGAGAACGAGCCGATGCCGTCCAATGTGCTGTCCGGGGTTTCGTGGGA GGAGTGA
Upstream 100 bases:
>100_bases GCTACACGGATCCGTAATATTCGTCATTATGTGTGCGCCGCGTAGCCATGGTCTGATAATGAAGGGCCTTCGCCTCGACG CGCGGCCAGACAGGGACAGG
Downstream 100 bases:
>100_bases GGCGGCAGTAGTTTAGCTGAGTGGTTGGTGGCAGCACGGGCTTGGGAGATATCCGGCATGCAATTGGCCGATAAAGCGCG TATCCTGCTCTCTGCATCAC
Product: family 5 extracellular solute-binding protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 508; Mature: 508
Protein sequence:
>508_residues MIKVSFVPARFAGQLSLRAALAAGLMMAAMAPAEAAKTTFTLGMSVEPTGLDPTIAAPVAIGQVTWQNVFEGLVTIDQAG KIQPQLAKSWEISPDGLTYTFKLQTGVTFHDGEVFDAASAKFTLDRARGADSVNPQKRFFASIASIDTPDAETLVLHLSA PTGSLIYWLGWPASVMVAPKTAADDKATPIGTGPFKFVGWAKGDKVELEKNADYWNKAAAAKLDKVTFRFIADPQAQAAA LKSGDLDALPEFAAPELMSSFEGDARLVTRIGNTELKVVAGMNNARKPFDDKRVRQALMMAIDRKTVIDGAWSGLGTPIG SHYTPNDPGYQDMTGVLPYDVEKAKALLAEAGYPNGFTFTIKSPQMAYAPRSAEVMQAMFAEIGVTMNIEPTEFPAKWVQ DIMKDRNFDMTIVAHAEPLDIDIYGRDPYYFNYKNPVFTALMKKVQETADPATQNAIYGETQKILAEDVPALYLFVMPKL GVWDGKLKGLWENEPMPSNVLSGVSWEE
Sequences:
>Translated_508_residues MIKVSFVPARFAGQLSLRAALAAGLMMAAMAPAEAAKTTFTLGMSVEPTGLDPTIAAPVAIGQVTWQNVFEGLVTIDQAG KIQPQLAKSWEISPDGLTYTFKLQTGVTFHDGEVFDAASAKFTLDRARGADSVNPQKRFFASIASIDTPDAETLVLHLSA PTGSLIYWLGWPASVMVAPKTAADDKATPIGTGPFKFVGWAKGDKVELEKNADYWNKAAAAKLDKVTFRFIADPQAQAAA LKSGDLDALPEFAAPELMSSFEGDARLVTRIGNTELKVVAGMNNARKPFDDKRVRQALMMAIDRKTVIDGAWSGLGTPIG SHYTPNDPGYQDMTGVLPYDVEKAKALLAEAGYPNGFTFTIKSPQMAYAPRSAEVMQAMFAEIGVTMNIEPTEFPAKWVQ DIMKDRNFDMTIVAHAEPLDIDIYGRDPYYFNYKNPVFTALMKKVQETADPATQNAIYGETQKILAEDVPALYLFVMPKL GVWDGKLKGLWENEPMPSNVLSGVSWEE >Mature_508_residues MIKVSFVPARFAGQLSLRAALAAGLMMAAMAPAEAAKTTFTLGMSVEPTGLDPTIAAPVAIGQVTWQNVFEGLVTIDQAG KIQPQLAKSWEISPDGLTYTFKLQTGVTFHDGEVFDAASAKFTLDRARGADSVNPQKRFFASIASIDTPDAETLVLHLSA PTGSLIYWLGWPASVMVAPKTAADDKATPIGTGPFKFVGWAKGDKVELEKNADYWNKAAAAKLDKVTFRFIADPQAQAAA LKSGDLDALPEFAAPELMSSFEGDARLVTRIGNTELKVVAGMNNARKPFDDKRVRQALMMAIDRKTVIDGAWSGLGTPIG SHYTPNDPGYQDMTGVLPYDVEKAKALLAEAGYPNGFTFTIKSPQMAYAPRSAEVMQAMFAEIGVTMNIEPTEFPAKWVQ DIMKDRNFDMTIVAHAEPLDIDIYGRDPYYFNYKNPVFTALMKKVQETADPATQNAIYGETQKILAEDVPALYLFVMPKL GVWDGKLKGLWENEPMPSNVLSGVSWEE
Specific function: Part of the ABC transporter complex gsiABCD involved in glutathione import [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Periplasm (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the bacterial solute-binding protein 5 family [H]
Homologues:
Organism=Escherichia coli, GI1787052, Length=496, Percent_Identity=29.2338709677419, Blast_Score=186, Evalue=3e-48, Organism=Escherichia coli, GI1789966, Length=514, Percent_Identity=25.875486381323, Blast_Score=130, Evalue=3e-31, Organism=Escherichia coli, GI1789887, Length=399, Percent_Identity=28.8220551378446, Blast_Score=114, Evalue=2e-26, Organism=Escherichia coli, GI1789397, Length=505, Percent_Identity=23.5643564356436, Blast_Score=110, Evalue=2e-25, Organism=Escherichia coli, GI1787495, Length=539, Percent_Identity=24.6753246753247, Blast_Score=105, Evalue=9e-24, Organism=Escherichia coli, GI1787762, Length=521, Percent_Identity=23.6084452975048, Blast_Score=100, Evalue=2e-22, Organism=Escherichia coli, GI1787551, Length=517, Percent_Identity=23.9845261121857, Blast_Score=100, Evalue=2e-22, Organism=Escherichia coli, GI87081878, Length=526, Percent_Identity=24.5247148288973, Blast_Score=84, Evalue=2e-17,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000914 [H]
Pfam domain/function: PF00496 SBP_bac_5 [H]
EC number: NA
Molecular weight: Translated: 55275; Mature: 55275
Theoretical pI: Translated: 4.81; Mature: 4.81
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.9 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.9 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIKVSFVPARFAGQLSLRAALAAGLMMAAMAPAEAAKTTFTLGMSVEPTGLDPTIAAPVA CEEEEEECCHHHCHHHHHHHHHHHHHHHHHCCHHHCCEEEEEECEECCCCCCCCCCCCHH IGQVTWQNVFEGLVTIDQAGKIQPQLAKSWEISPDGLTYTFKLQTGVTFHDGEVFDAASA HHHHHHHHHHHHHEEECCCCCCCHHHHHCCCCCCCCEEEEEEEECCCEEECCCEEECCCC KFTLDRARGADSVNPQKRFFASIASIDTPDAETLVLHLSAPTGSLIYWLGWPASVMVAPK EEEEHHHCCCCCCCHHHHHHHHHHCCCCCCCCEEEEEEECCCCCEEEEECCCCEEEEECC TAADDKATPIGTGPFKFVGWAKGDKVELEKNADYWNKAAAAKLDKVTFRFIADPQAQAAA CCCCCCCCCCCCCCCEEEEECCCCEEEEECCCCHHHHHHHHHHHHEEEEEECCCCHHHHH LKSGDLDALPEFAAPELMSSFEGDARLVTRIGNTELKVVAGMNNARKPFDDKRVRQALMM HCCCCCCCCCCCCCHHHHHHCCCCEEEEEECCCCEEEEEECCCCCCCCCCHHHHHHHHHH AIDRKTVIDGAWSGLGTPIGSHYTPNDPGYQDMTGVLPYDVEKAKALLAEAGYPNGFTFT HHCCHHHCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEE IKSPQMAYAPRSAEVMQAMFAEIGVTMNIEPTEFPAKWVQDIMKDRNFDMTIVAHAEPLD ECCCCEEECCCHHHHHHHHHHHCCEEEECCCCCCCHHHHHHHHHCCCCCEEEEEECCCCE IDIYGRDPYYFNYKNPVFTALMKKVQETADPATQNAIYGETQKILAEDVPALYLFVMPKL EEEEECCCEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCEEEEEECCCC GVWDGKLKGLWENEPMPSNVLSGVSWEE CCCCCCCCCCCCCCCCCHHHHCCCCCCC >Mature Secondary Structure MIKVSFVPARFAGQLSLRAALAAGLMMAAMAPAEAAKTTFTLGMSVEPTGLDPTIAAPVA CEEEEEECCHHHCHHHHHHHHHHHHHHHHHCCHHHCCEEEEEECEECCCCCCCCCCCCHH IGQVTWQNVFEGLVTIDQAGKIQPQLAKSWEISPDGLTYTFKLQTGVTFHDGEVFDAASA HHHHHHHHHHHHHEEECCCCCCCHHHHHCCCCCCCCEEEEEEEECCCEEECCCEEECCCC KFTLDRARGADSVNPQKRFFASIASIDTPDAETLVLHLSAPTGSLIYWLGWPASVMVAPK EEEEHHHCCCCCCCHHHHHHHHHHCCCCCCCCEEEEEEECCCCCEEEEECCCCEEEEECC TAADDKATPIGTGPFKFVGWAKGDKVELEKNADYWNKAAAAKLDKVTFRFIADPQAQAAA CCCCCCCCCCCCCCCEEEEECCCCEEEEECCCCHHHHHHHHHHHHEEEEEECCCCHHHHH LKSGDLDALPEFAAPELMSSFEGDARLVTRIGNTELKVVAGMNNARKPFDDKRVRQALMM HCCCCCCCCCCCCCHHHHHHCCCCEEEEEECCCCEEEEEECCCCCCCCCCHHHHHHHHHH AIDRKTVIDGAWSGLGTPIGSHYTPNDPGYQDMTGVLPYDVEKAKALLAEAGYPNGFTFT HHCCHHHCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEE IKSPQMAYAPRSAEVMQAMFAEIGVTMNIEPTEFPAKWVQDIMKDRNFDMTIVAHAEPLD ECCCCEEECCCHHHHHHHHHHHCCEEEECCCCCCCHHHHHHHHHCCCCCEEEEEECCCCE IDIYGRDPYYFNYKNPVFTALMKKVQETADPATQNAIYGETQKILAEDVPALYLFVMPKL EEEEECCCEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCEEEEEECCCC GVWDGKLKGLWENEPMPSNVLSGVSWEE CCCCCCCCCCCCCCCCCHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA