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The map label for this gene is ddpA [H]

Identifier: 209551423

GI number: 209551423

Start: 3993824

End: 3995467

Strand: Reverse

Name: ddpA [H]

Synonym: Rleg2_3852

Alternate gene names: 209551423

Gene position: 3995467-3993824 (Counterclockwise)

Preceding gene: 209551424

Following gene: 209551422

Centisome position: 88.05

GC content: 58.21

Gene sequence:

>1644_bases
ATGATGATAACCAAGCTTAGCCGCAATTTCCGCATGCTTTCCACGGGGGCTGCTCTTTCGCTCCTGATGATGACCGCACC
CTCCGCCTTCGCCGAGACGCCCAAGGATACGCTGGTCGAGGGCTTTGCCATCGACGACATCATTACGATGGATCCGGGCG
AGGCGTTCGAGCTTTCGACCGCCGAAATCACCAGCAATAGCTACAGCCTGCTTGTCCGTCTCGACATGGACGACACGTCC
AAGGTCAAGGGCGATCTGGCCGACAGCTGGAGCGTTTCCGACGACGGTCTGACCTATACGTTCAAGCTGAAATCCGGCAT
GAAATTCGCCTCCGGCAACCCGATCACCGCCGAAGATGTTGCTTGGTCGTTCGAGCGCGCCGTCAAGCTCGACAAGAGCC
CGGCCTTCATCCTCACTCAGTTCGGCCTGACCGGCGACAACGTCAGCGAAAAGGCCAAGGCGGCCGATGCCGGCACTTTC
GTCTTCACCGTCGACAAGGCCTATGCGCCGAGCTTCGTTCTCAACTGCCTGACGGCGACGGTTGCCTCCGTCGTCGACAA
GAAGCTGGTGATGGACCATGTGAAGGCGGTAACACCAGATGCCGAGCACAAATACGACAATGATTTCGGCAATGAATGGC
TGAAGACCGGCTATGCCGGCTCCGGAGCCTTCAAGCTGCGCGAATGGCGCGCCAATGAAGTGGTCGTTCTCGAGCGCAAC
GACAATTATTACGGCGACAAGGCAAAGCTCAACCGCGTCATCTACCGCTACATGAAGGAAAGCTCGGCCCAGCGGCTGGC
GCTCGAAGCCGGCGATATCGATATCGCCCGCAACCTCGAGCCTGGCGACATCGACGCCGTTTCGAAAAATGCCGATCTCG
CGACGACGAGTGCGCCGAAGGGCACGATCTATTATGTCAGCCTCAACAACAAGAACGAGAACCTGAAGAAGCCCGAGGTG
CAGGAAGCCTTCAAATATCTGGTCGACTATGATGCGATCGGCGCGACCTTGATCAAGGGTATCGGCGAAATCCACCAGAC
CTTCCTGCCGAAGGGCCAGCTCGGCGCGCTCGACGAAAATCCCTACAAGCTCGATGTCGCCAAGGCCAAGGAACTGCTGG
CCAAGGCCGGCGTGCCCGACGGTTTCTCGATCACCATGGACGTGCGCAACAGCCAGCCGGTGACCGGTATCGCCGAATCC
ATGCAGCAGACGCTGGCGCAGGCCGGCGTGAAGATGGAAATCATCCCGGGTGACGGCAAGCAGACGCTGACCAAATACCG
CGCCCGCACACATGATATGTATATCGGCCAGTGGGGTTCGGACTATTTCGATCCGAATTCCAACGCCGATACCTTTACCG
GCAATCCCGACAATTCCGATGCCGGCACGGTCAAGACGCTCGCATGGCGCAACACCTGGGAGGCGCCGGAGCTCGACAAG
GAAGCCAAGGCAGCTCTTCTCGAACGTGATGCCGCCAAACGCGCCGCCATATATCAGGACATCCAGAAGAAATACCTGGC
AAACAGCCCCTTCGTCTTTATCTTCCAGCAGACCGAAGTGGCCGGTTACCGCAAGAACCTCAAGGACTTCAAGTTGGGTC
CGAGCTTCGATACCAATTTCGTCGGTCCGATCGCCAAGGAATAG

Upstream 100 bases:

>100_bases
AGCGTTGCGCACCTCTGGACGCGCCAGGAATGGGCAATAGTTTTAATGAGGCAGGACCGACAAAACGCTTCGTAATCAAT
CAAAACAGGGGGAACTGACC

Downstream 100 bases:

>100_bases
TCCGGCAGGATCGATCGCTTGAGCACCGTCGAAACGACGTCAGAGGCGCGGCCCCGAAAGGGCCGTGCCAGGGCCTTTGC
AAAGGCCCTGGGGCGGTTCC

Product: family 5 extracellular solute-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 547; Mature: 547

Protein sequence:

>547_residues
MMITKLSRNFRMLSTGAALSLLMMTAPSAFAETPKDTLVEGFAIDDIITMDPGEAFELSTAEITSNSYSLLVRLDMDDTS
KVKGDLADSWSVSDDGLTYTFKLKSGMKFASGNPITAEDVAWSFERAVKLDKSPAFILTQFGLTGDNVSEKAKAADAGTF
VFTVDKAYAPSFVLNCLTATVASVVDKKLVMDHVKAVTPDAEHKYDNDFGNEWLKTGYAGSGAFKLREWRANEVVVLERN
DNYYGDKAKLNRVIYRYMKESSAQRLALEAGDIDIARNLEPGDIDAVSKNADLATTSAPKGTIYYVSLNNKNENLKKPEV
QEAFKYLVDYDAIGATLIKGIGEIHQTFLPKGQLGALDENPYKLDVAKAKELLAKAGVPDGFSITMDVRNSQPVTGIAES
MQQTLAQAGVKMEIIPGDGKQTLTKYRARTHDMYIGQWGSDYFDPNSNADTFTGNPDNSDAGTVKTLAWRNTWEAPELDK
EAKAALLERDAAKRAAIYQDIQKKYLANSPFVFIFQQTEVAGYRKNLKDFKLGPSFDTNFVGPIAKE

Sequences:

>Translated_547_residues
MMITKLSRNFRMLSTGAALSLLMMTAPSAFAETPKDTLVEGFAIDDIITMDPGEAFELSTAEITSNSYSLLVRLDMDDTS
KVKGDLADSWSVSDDGLTYTFKLKSGMKFASGNPITAEDVAWSFERAVKLDKSPAFILTQFGLTGDNVSEKAKAADAGTF
VFTVDKAYAPSFVLNCLTATVASVVDKKLVMDHVKAVTPDAEHKYDNDFGNEWLKTGYAGSGAFKLREWRANEVVVLERN
DNYYGDKAKLNRVIYRYMKESSAQRLALEAGDIDIARNLEPGDIDAVSKNADLATTSAPKGTIYYVSLNNKNENLKKPEV
QEAFKYLVDYDAIGATLIKGIGEIHQTFLPKGQLGALDENPYKLDVAKAKELLAKAGVPDGFSITMDVRNSQPVTGIAES
MQQTLAQAGVKMEIIPGDGKQTLTKYRARTHDMYIGQWGSDYFDPNSNADTFTGNPDNSDAGTVKTLAWRNTWEAPELDK
EAKAALLERDAAKRAAIYQDIQKKYLANSPFVFIFQQTEVAGYRKNLKDFKLGPSFDTNFVGPIAKE
>Mature_547_residues
MMITKLSRNFRMLSTGAALSLLMMTAPSAFAETPKDTLVEGFAIDDIITMDPGEAFELSTAEITSNSYSLLVRLDMDDTS
KVKGDLADSWSVSDDGLTYTFKLKSGMKFASGNPITAEDVAWSFERAVKLDKSPAFILTQFGLTGDNVSEKAKAADAGTF
VFTVDKAYAPSFVLNCLTATVASVVDKKLVMDHVKAVTPDAEHKYDNDFGNEWLKTGYAGSGAFKLREWRANEVVVLERN
DNYYGDKAKLNRVIYRYMKESSAQRLALEAGDIDIARNLEPGDIDAVSKNADLATTSAPKGTIYYVSLNNKNENLKKPEV
QEAFKYLVDYDAIGATLIKGIGEIHQTFLPKGQLGALDENPYKLDVAKAKELLAKAGVPDGFSITMDVRNSQPVTGIAES
MQQTLAQAGVKMEIIPGDGKQTLTKYRARTHDMYIGQWGSDYFDPNSNADTFTGNPDNSDAGTVKTLAWRNTWEAPELDK
EAKAALLERDAAKRAAIYQDIQKKYLANSPFVFIFQQTEVAGYRKNLKDFKLGPSFDTNFVGPIAKE

Specific function: Part of the ABC transporter complex ddpABCDF, which is probably involved in D,D-dipeptide transport [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 5 family [H]

Homologues:

Organism=Escherichia coli, GI1787762, Length=536, Percent_Identity=28.9179104477612, Blast_Score=184, Evalue=1e-47,
Organism=Escherichia coli, GI1787052, Length=542, Percent_Identity=24.9077490774908, Blast_Score=135, Evalue=5e-33,
Organism=Escherichia coli, GI1789966, Length=492, Percent_Identity=25.4065040650407, Blast_Score=125, Evalue=7e-30,
Organism=Escherichia coli, GI1789887, Length=501, Percent_Identity=27.3453093812375, Blast_Score=108, Evalue=7e-25,
Organism=Escherichia coli, GI1787551, Length=491, Percent_Identity=22.6069246435845, Blast_Score=99, Evalue=5e-22,
Organism=Escherichia coli, GI1787495, Length=533, Percent_Identity=24.390243902439, Blast_Score=95, Evalue=1e-20,
Organism=Escherichia coli, GI1789397, Length=539, Percent_Identity=24.30426716141, Blast_Score=86, Evalue=5e-18,
Organism=Escherichia coli, GI87081878, Length=533, Percent_Identity=24.015009380863, Blast_Score=83, Evalue=5e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000914 [H]

Pfam domain/function: PF00496 SBP_bac_5 [H]

EC number: NA

Molecular weight: Translated: 60152; Mature: 60152

Theoretical pI: Translated: 4.91; Mature: 4.91

Prosite motif: PS00284 SERPIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMITKLSRNFRMLSTGAALSLLMMTAPSAFAETPKDTLVEGFAIDDIITMDPGEAFELST
CEEEECCCCEEEEECHHHHHHHHHHCCHHHHCCCHHHHHCCEEECCEEECCCCCCEEEEE
AEITSNSYSLLVRLDMDDTSKVKGDLADSWSVSDDGLTYTFKLKSGMKFASGNPITAEDV
HEECCCCEEEEEEECCCCCHHHCCCCCCCCCCCCCCEEEEEEECCCCEECCCCCCCHHHH
AWSFERAVKLDKSPAFILTQFGLTGDNVSEKAKAADAGTFVFTVDKAYAPSFVLNCLTAT
HHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHCCCCEEEEEECCHHCHHHHHHHHHHH
VASVVDKKLVMDHVKAVTPDAEHKYDNDFGNEWLKTGYAGSGAFKLREWRANEVVVLERN
HHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEEECCCEEEEEECC
DNYYGDKAKLNRVIYRYMKESSAQRLALEAGDIDIARNLEPGDIDAVSKNADLATTSAPK
CCCCCCHHHHHHHHHHHHHHCCHHEEEEECCCEEEECCCCCCCCCCCCCCCCEEECCCCC
GTIYYVSLNNKNENLKKPEVQEAFKYLVDYDAIGATLIKGIGEIHQTFLPKGQLGALDEN
CEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
PYKLDVAKAKELLAKAGVPDGFSITMDVRNSQPVTGIAESMQQTLAQAGVKMEIIPGDGK
CCEEEHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCH
QTLTKYRARTHDMYIGQWGSDYFDPNSNADTFTGNPDNSDAGTVKTLAWRNTWEAPELDK
HHHHHHHHHHCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCH
EAKAALLERDAAKRAAIYQDIQKKYLANSPFVFIFQQTEVAGYRKNLKDFKLGPSFDTNF
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHCHHHCCCCCCCCCCC
VGPIAKE
CCCCCCC
>Mature Secondary Structure
MMITKLSRNFRMLSTGAALSLLMMTAPSAFAETPKDTLVEGFAIDDIITMDPGEAFELST
CEEEECCCCEEEEECHHHHHHHHHHCCHHHHCCCHHHHHCCEEECCEEECCCCCCEEEEE
AEITSNSYSLLVRLDMDDTSKVKGDLADSWSVSDDGLTYTFKLKSGMKFASGNPITAEDV
HEECCCCEEEEEEECCCCCHHHCCCCCCCCCCCCCCEEEEEEECCCCEECCCCCCCHHHH
AWSFERAVKLDKSPAFILTQFGLTGDNVSEKAKAADAGTFVFTVDKAYAPSFVLNCLTAT
HHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHCCCCEEEEEECCHHCHHHHHHHHHHH
VASVVDKKLVMDHVKAVTPDAEHKYDNDFGNEWLKTGYAGSGAFKLREWRANEVVVLERN
HHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEEECCCEEEEEECC
DNYYGDKAKLNRVIYRYMKESSAQRLALEAGDIDIARNLEPGDIDAVSKNADLATTSAPK
CCCCCCHHHHHHHHHHHHHHCCHHEEEEECCCEEEECCCCCCCCCCCCCCCCEEECCCCC
GTIYYVSLNNKNENLKKPEVQEAFKYLVDYDAIGATLIKGIGEIHQTFLPKGQLGALDEN
CEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
PYKLDVAKAKELLAKAGVPDGFSITMDVRNSQPVTGIAESMQQTLAQAGVKMEIIPGDGK
CCEEEHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCH
QTLTKYRARTHDMYIGQWGSDYFDPNSNADTFTGNPDNSDAGTVKTLAWRNTWEAPELDK
HHHHHHHHHHCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCH
EAKAALLERDAAKRAAIYQDIQKKYLANSPFVFIFQQTEVAGYRKNLKDFKLGPSFDTNF
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHCHHHCCCCCCCCCCC
VGPIAKE
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 9751644 [H]