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The map label for this gene is dppB [H]

Identifier: 209551422

GI number: 209551422

Start: 3992738

End: 3993805

Strand: Reverse

Name: dppB [H]

Synonym: Rleg2_3851

Alternate gene names: 209551422

Gene position: 3993805-3992738 (Counterclockwise)

Preceding gene: 209551423

Following gene: 209551421

Centisome position: 88.01

GC content: 61.8

Gene sequence:

>1068_bases
TTGAGCACCGTCGAAACGACGTCAGAGGCGCGGCCCCGAAAGGGCCGTGCCAGGGCCTTTGCAAAGGCCCTGGGGCGGTT
CCTGTTTGCCGCCGTCACCACCTATCTCGGCCTGCTGGCCGTCACCTTCTTCATCGGCCGCGTCGTGCCGATCGATCCCG
TGCTCGCCATTCTCGGCGACCGCGCCCCCAACCATGTCGTCGAGCGGGTGCGCCAGGAAATGGGCTTCAACCTGCCGCTC
TATCAGCAGTTCTTCATCTATATCAAAGGCATTCTGTCCGGTGATTTCGGCAATTCGGTGCTGACGACCAATCCCGTCAT
GGTCGATATCCGCCGTGTCCTGCCGGCGACCATCGAGCTTGCGACGCTCGGAACGCTGATCGGCGCTTTCGTCGGCGTGC
CGCTCGGCGTTCTCGCCGCCGTGCGCCGCGGCAGCATCGCCGACCAGGTCGTGCGCGTTGTCGGCCTCGTCGGCTATTCG
GTGCCGATTTTCTGGCTGGCGCTGATTTCGCTCGTCATCTTCTATGCGCAACTGCGCTGGGTGGCATTTCCCGGCCGCAT
CGACATCGTCTTCGAATATACGTTCACGCCGATCACCGGCCTGTATCTGCTGGACAGCGCCTGGCAGGGACAATGGGATG
TCTTTTACGACGTCTTCCGCCACATCATCCTGCCGGCATCGCTGCTCGGCTATTTCTCGCTCGCCTATATCAGCCGCATG
ACGCGCAGCTTCATGCTGAACGAGCTTTCCCAGGAATATATCGTTGCCGCGCGCGCCAAGGGGCTTTCGGAAACGCGGGT
GATCTGGGGCCATGCGTTGCGCAATGCCGCCGTGCCGCTGGTCACCGTCATCGCGCTTTCCTATGCCGGCCTGCTGGAAG
GATCGGTGCTGACCGAGACCGTCTTCTCCTGGCCGGGCATCGGGCTCTATATCACCAATTCGCTGCAGAATGCCGATATG
AACGCCGTGCTCGGCGGCACCATCGTCATCGGCACTGTTTTCATCGGCATCAACCTTCTGTCCGATCTTCTCTACCGGAC
GCTCGACCCGAGGACGCGAAACCGATGA

Upstream 100 bases:

>100_bases
CGGTTACCGCAAGAACCTCAAGGACTTCAAGTTGGGTCCGAGCTTCGATACCAATTTCGTCGGTCCGATCGCCAAGGAAT
AGTCCGGCAGGATCGATCGC

Downstream 100 bases:

>100_bases
CCGCTCCCGCCAGCCCATCTCCTGCGATGAGCCGCCGCGAATGGCTGCTGTCCGACCGGCCGCAATCGCGCCTGCAGGCC
CGCCTCGGCCGCGCCTATGT

Product: binding-protein-dependent transporters inner membrane component

Products: ADP; phosphate; dipeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 355; Mature: 354

Protein sequence:

>355_residues
MSTVETTSEARPRKGRARAFAKALGRFLFAAVTTYLGLLAVTFFIGRVVPIDPVLAILGDRAPNHVVERVRQEMGFNLPL
YQQFFIYIKGILSGDFGNSVLTTNPVMVDIRRVLPATIELATLGTLIGAFVGVPLGVLAAVRRGSIADQVVRVVGLVGYS
VPIFWLALISLVIFYAQLRWVAFPGRIDIVFEYTFTPITGLYLLDSAWQGQWDVFYDVFRHIILPASLLGYFSLAYISRM
TRSFMLNELSQEYIVAARAKGLSETRVIWGHALRNAAVPLVTVIALSYAGLLEGSVLTETVFSWPGIGLYITNSLQNADM
NAVLGGTIVIGTVFIGINLLSDLLYRTLDPRTRNR

Sequences:

>Translated_355_residues
MSTVETTSEARPRKGRARAFAKALGRFLFAAVTTYLGLLAVTFFIGRVVPIDPVLAILGDRAPNHVVERVRQEMGFNLPL
YQQFFIYIKGILSGDFGNSVLTTNPVMVDIRRVLPATIELATLGTLIGAFVGVPLGVLAAVRRGSIADQVVRVVGLVGYS
VPIFWLALISLVIFYAQLRWVAFPGRIDIVFEYTFTPITGLYLLDSAWQGQWDVFYDVFRHIILPASLLGYFSLAYISRM
TRSFMLNELSQEYIVAARAKGLSETRVIWGHALRNAAVPLVTVIALSYAGLLEGSVLTETVFSWPGIGLYITNSLQNADM
NAVLGGTIVIGTVFIGINLLSDLLYRTLDPRTRNR
>Mature_354_residues
STVETTSEARPRKGRARAFAKALGRFLFAAVTTYLGLLAVTFFIGRVVPIDPVLAILGDRAPNHVVERVRQEMGFNLPLY
QQFFIYIKGILSGDFGNSVLTTNPVMVDIRRVLPATIELATLGTLIGAFVGVPLGVLAAVRRGSIADQVVRVVGLVGYSV
PIFWLALISLVIFYAQLRWVAFPGRIDIVFEYTFTPITGLYLLDSAWQGQWDVFYDVFRHIILPASLLGYFSLAYISRMT
RSFMLNELSQEYIVAARAKGLSETRVIWGHALRNAAVPLVTVIALSYAGLLEGSVLTETVFSWPGIGLYITNSLQNADMN
AVLGGTIVIGTVFIGINLLSDLLYRTLDPRTRNR

Specific function: Part of the binding-protein-dependent transport system for dipeptides; probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789965, Length=334, Percent_Identity=42.2155688622754, Blast_Score=249, Evalue=1e-67,
Organism=Escherichia coli, GI1787761, Length=332, Percent_Identity=40.3614457831325, Blast_Score=231, Evalue=5e-62,
Organism=Escherichia coli, GI1787053, Length=315, Percent_Identity=32.3809523809524, Blast_Score=170, Evalue=2e-43,
Organism=Escherichia coli, GI1787550, Length=276, Percent_Identity=31.5217391304348, Blast_Score=164, Evalue=7e-42,
Organism=Escherichia coli, GI1789888, Length=335, Percent_Identity=31.3432835820896, Blast_Score=160, Evalue=2e-40,
Organism=Escherichia coli, GI1787497, Length=334, Percent_Identity=29.3413173652695, Blast_Score=140, Evalue=1e-34,
Organism=Escherichia coli, GI1788504, Length=290, Percent_Identity=28.6206896551724, Blast_Score=123, Evalue=2e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 39158; Mature: 39026

Theoretical pI: Translated: 9.91; Mature: 9.91

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTVETTSEARPRKGRARAFAKALGRFLFAAVTTYLGLLAVTFFIGRVVPIDPVLAILGD
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCC
RAPNHVVERVRQEMGFNLPLYQQFFIYIKGILSGDFGNSVLTTNPVMVDIRRVLPATIEL
CCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCEECCCHHHHHHHHHHHHHHH
ATLGTLIGAFVGVPLGVLAAVRRGSIADQVVRVVGLVGYSVPIFWLALISLVIFYAQLRW
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VAFPGRIDIVFEYTFTPITGLYLLDSAWQGQWDVFYDVFRHIILPASLLGYFSLAYISRM
EECCCEEEEEEEEECCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TRSFMLNELSQEYIVAARAKGLSETRVIWGHALRNAAVPLVTVIALSYAGLLEGSVLTET
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
VFSWPGIGLYITNSLQNADMNAVLGGTIVIGTVFIGINLLSDLLYRTLDPRTRNR
HHCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
STVETTSEARPRKGRARAFAKALGRFLFAAVTTYLGLLAVTFFIGRVVPIDPVLAILGD
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCC
RAPNHVVERVRQEMGFNLPLYQQFFIYIKGILSGDFGNSVLTTNPVMVDIRRVLPATIEL
CCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCEECCCHHHHHHHHHHHHHHH
ATLGTLIGAFVGVPLGVLAAVRRGSIADQVVRVVGLVGYSVPIFWLALISLVIFYAQLRW
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VAFPGRIDIVFEYTFTPITGLYLLDSAWQGQWDVFYDVFRHIILPASLLGYFSLAYISRM
EECCCEEEEEEEEECCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TRSFMLNELSQEYIVAARAKGLSETRVIWGHALRNAAVPLVTVIALSYAGLLEGSVLTET
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
VFSWPGIGLYITNSLQNADMNAVLGGTIVIGTVFIGINLLSDLLYRTLDPRTRNR
HHCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; dipeptides [Periplasm]; H2O [C]

Specific reaction: ATP + dipeptides [Periplasm] + H2O = ADP + phosphate + dipeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]