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The map label for this gene is ddpC [H]

Identifier: 209551421

GI number: 209551421

Start: 3991806

End: 3992741

Strand: Reverse

Name: ddpC [H]

Synonym: Rleg2_3850

Alternate gene names: 209551421

Gene position: 3992741-3991806 (Counterclockwise)

Preceding gene: 209551422

Following gene: 209551420

Centisome position: 87.99

GC content: 66.77

Gene sequence:

>936_bases
ATGACCGCTCCCGCCAGCCCATCTCCTGCGATGAGCCGCCGCGAATGGCTGCTGTCCGACCGGCCGCAATCGCGCCTGCA
GGCCCGCCTCGGCCGCGCCTATGTCACCTGGCGGCAGTTCACGGCCAACCGGCTTGCCGTCGTCGGCCTGCTGATCATCA
TCGCGCTGCTTTTCATCGCCGCCTTTGCCAATCTCATCGCCACCCATGATCCCGTCGTCGGCGATCTGCGCAATGCGCGG
CTGCTGCCGCCGGGAACGGCTGAATACCTGCTCGGCACCGACGACCAGGGCCGCGATATCTTTTCGCGGCTGATCTACGG
ATCGCGATTGACGCTGCTCGTCATCGTGCTCGTCGCCGTCATCTCGGCGCCGATCGGGCTGATCGTCGGCACGGTTTCCG
GATATGCCGGAGGCTGGGTCGATGCGACGCTGATGCGCATCACCGATATTTTCCTCGCCTTTCCGAAGCTGGTGCTGGCG
CTCGCCTTTGTGGCCGCACTCGGCCCCGGCATCCAGAACGCCATCATCGCCATCGCCATCACATCCTGGCCGCCCTATGC
CCGCATCGCCCGCGCCGAGACGCTGACGGTCCGGCGCTCCGACTATATCTCGGCGGTGAAGCTGATGGGCGCCTCGCCGC
TGCGCATCATCGTGCGCCATGTCATGCCGCTCTGCATTTCCTCGCTGATCGTGCGCGTGACGCTCGACATGGCGGGCATC
ATCCTGACGGCCGCCGGTCTCGGTTTCCTCGGTCTCGGGGCGCAGCCGCCGCTGCCGGAATGGGGGGCGATGATCGCCTC
GGGACGGCGCTTCATCCTCGATCAATGGTGGGTCGCCGCCATGCCCGGCATCGCCATCCTCATCGTCAGCCTCGGCTTCA
ACCTGCTTGGCGACGGCCTGCGCGACGCGCTCGATCCGAAGGAGGCCGGCCAGTGA

Upstream 100 bases:

>100_bases
CCGTGCTCGGCGGCACCATCGTCATCGGCACTGTTTTCATCGGCATCAACCTTCTGTCCGATCTTCTCTACCGGACGCTC
GACCCGAGGACGCGAAACCG

Downstream 100 bases:

>100_bases
CGACACTTTTGACGGTCGACAATCTCAAGGTCAGCTATCCCACCCGCACCGGCGTGATCGAGGCCGTGCGCGGCGTCTCC
TTCACGCTCGGCAAGGAAAG

Product: binding-protein-dependent transporters inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 311; Mature: 310

Protein sequence:

>311_residues
MTAPASPSPAMSRREWLLSDRPQSRLQARLGRAYVTWRQFTANRLAVVGLLIIIALLFIAAFANLIATHDPVVGDLRNAR
LLPPGTAEYLLGTDDQGRDIFSRLIYGSRLTLLVIVLVAVISAPIGLIVGTVSGYAGGWVDATLMRITDIFLAFPKLVLA
LAFVAALGPGIQNAIIAIAITSWPPYARIARAETLTVRRSDYISAVKLMGASPLRIIVRHVMPLCISSLIVRVTLDMAGI
ILTAAGLGFLGLGAQPPLPEWGAMIASGRRFILDQWWVAAMPGIAILIVSLGFNLLGDGLRDALDPKEAGQ

Sequences:

>Translated_311_residues
MTAPASPSPAMSRREWLLSDRPQSRLQARLGRAYVTWRQFTANRLAVVGLLIIIALLFIAAFANLIATHDPVVGDLRNAR
LLPPGTAEYLLGTDDQGRDIFSRLIYGSRLTLLVIVLVAVISAPIGLIVGTVSGYAGGWVDATLMRITDIFLAFPKLVLA
LAFVAALGPGIQNAIIAIAITSWPPYARIARAETLTVRRSDYISAVKLMGASPLRIIVRHVMPLCISSLIVRVTLDMAGI
ILTAAGLGFLGLGAQPPLPEWGAMIASGRRFILDQWWVAAMPGIAILIVSLGFNLLGDGLRDALDPKEAGQ
>Mature_310_residues
TAPASPSPAMSRREWLLSDRPQSRLQARLGRAYVTWRQFTANRLAVVGLLIIIALLFIAAFANLIATHDPVVGDLRNARL
LPPGTAEYLLGTDDQGRDIFSRLIYGSRLTLLVIVLVAVISAPIGLIVGTVSGYAGGWVDATLMRITDIFLAFPKLVLAL
AFVAALGPGIQNAIIAIAITSWPPYARIARAETLTVRRSDYISAVKLMGASPLRIIVRHVMPLCISSLIVRVTLDMAGII
LTAAGLGFLGLGAQPPLPEWGAMIASGRRFILDQWWVAAMPGIAILIVSLGFNLLGDGLRDALDPKEAGQ

Specific function: Part of the ABC transporter complex ddpABCDF, which is probably involved in D,D-dipeptide transport. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787760, Length=291, Percent_Identity=47.766323024055, Blast_Score=254, Evalue=5e-69,
Organism=Escherichia coli, GI1787054, Length=299, Percent_Identity=41.4715719063545, Blast_Score=221, Evalue=4e-59,
Organism=Escherichia coli, GI1789964, Length=276, Percent_Identity=48.9130434782609, Blast_Score=213, Evalue=1e-56,
Organism=Escherichia coli, GI1789889, Length=239, Percent_Identity=41.8410041841004, Blast_Score=177, Evalue=6e-46,
Organism=Escherichia coli, GI1787498, Length=271, Percent_Identity=33.5793357933579, Blast_Score=154, Evalue=9e-39,
Organism=Escherichia coli, GI1787549, Length=279, Percent_Identity=36.2007168458781, Blast_Score=147, Evalue=9e-37,
Organism=Escherichia coli, GI1788505, Length=227, Percent_Identity=29.5154185022026, Blast_Score=109, Evalue=3e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 33334; Mature: 33203

Theoretical pI: Translated: 10.60; Mature: 10.60

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAPASPSPAMSRREWLLSDRPQSRLQARLGRAYVTWRQFTANRLAVVGLLIIIALLFIA
CCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AFANLIATHDPVVGDLRNARLLPPGTAEYLLGTDDQGRDIFSRLIYGSRLTLLVIVLVAV
HHHHHHHCCCCCHHCCCCCCCCCCCCCHHEECCCCCHHHHHHHHHHCCHHHHHHHHHHHH
ISAPIGLIVGTVSGYAGGWVDATLMRITDIFLAFPKLVLALAFVAALGPGIQNAIIAIAI
HHCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHEEEEEEE
TSWPPYARIARAETLTVRRSDYISAVKLMGASPLRIIVRHVMPLCISSLIVRVTLDMAGI
CCCCCHHHHHHHHHHEEHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ILTAAGLGFLGLGAQPPLPEWGAMIASGRRFILDQWWVAAMPGIAILIVSLGFNLLGDGL
HHHHHHHHHHCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
RDALDPKEAGQ
HHHCCCHHCCC
>Mature Secondary Structure 
TAPASPSPAMSRREWLLSDRPQSRLQARLGRAYVTWRQFTANRLAVVGLLIIIALLFIA
CCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AFANLIATHDPVVGDLRNARLLPPGTAEYLLGTDDQGRDIFSRLIYGSRLTLLVIVLVAV
HHHHHHHCCCCCHHCCCCCCCCCCCCCHHEECCCCCHHHHHHHHHHCCHHHHHHHHHHHH
ISAPIGLIVGTVSGYAGGWVDATLMRITDIFLAFPKLVLALAFVAALGPGIQNAIIAIAI
HHCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHEEEEEEE
TSWPPYARIARAETLTVRRSDYISAVKLMGASPLRIIVRHVMPLCISSLIVRVTLDMAGI
CCCCCHHHHHHHHHHEEHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ILTAAGLGFLGLGAQPPLPEWGAMIASGRRFILDQWWVAAMPGIAILIVSLGFNLLGDGL
HHHHHHHHHHCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
RDALDPKEAGQ
HHHCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 9751644 [H]