| Definition | Rhizobium leguminosarum bv. trifolii WSM2304 chromosome, complete genome. |
|---|---|
| Accession | NC_011369 |
| Length | 4,537,948 |
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The map label for this gene is oppD [H]
Identifier: 209551420
GI number: 209551420
Start: 3990976
End: 3991809
Strand: Reverse
Name: oppD [H]
Synonym: Rleg2_3849
Alternate gene names: 209551420
Gene position: 3991809-3990976 (Counterclockwise)
Preceding gene: 209551421
Following gene: 209551419
Centisome position: 87.97
GC content: 63.19
Gene sequence:
>834_bases GTGACGACACTTTTGACGGTCGACAATCTCAAGGTCAGCTATCCCACCCGCACCGGCGTGATCGAGGCCGTGCGCGGCGT CTCCTTCACGCTCGGCAAGGAAAGGCTCGGCATCGTCGGCGAATCCGGTTCCGGCAAGTCGCAGACCGGCCGGGCGATCA TGGGGCTGACGCCGAAACATGGCATCGTCACCGCCGACCGGCTGGATTTCAACGGCATCGACCTGCTCAAGGCTTCCGCC GGGGAAAGGCGAAGGCTGCGCGGCAAGCGCATCGCCATGATCCTGCAGGATCCGAAATATTCGCTCGATCCGGTGATGAC GATCGGACGGCAGATCTGTGAAACGCTGCGCACGCATGAAAAACTCGGCAAGGCGGAGGCGCGCGAGCGGGCGCTCGCCA TGTTGGAGGCGGTGCAGATCCGCGACCCGAAACGTGTCTTCGACCTGCATCCACATGAGGTTTCGGGCGGCATGGGGCAG CGCGCGATGATCGCCATGATGCTGATTGCCGGGCCCGAACTGCTGATCGCCGACGAGCCGACCTCGGCGCTCGACGTGAC GGTGCAGCTCGATGTGCTCAGAATCATGGACAGGCTGGTGGCCGACCGCGGCATGGGGCTGATTTTCGTCTCCCATGATC TCAGGCTGGTTTCCTCCTTCTGCGACCGGGTGATCGTCATGTATGCCGGAAAGATCGTCGAGGAGCTCGCGGCCGCCGAT CTCAAACATGCACAGCATCCCTATACGCAAGGGCTGTTGAACTGCATGCCCGAGATCGGCTCGAACCGTCACCCGCTGCC GGTGCTCGACCGCAAGCCGGAGTGGGCGGCATGA
Upstream 100 bases:
>100_bases TCGCCGCCATGCCCGGCATCGCCATCCTCATCGTCAGCCTCGGCTTCAACCTGCTTGGCGACGGCCTGCGCGACGCGCTC GATCCGAAGGAGGCCGGCCA
Downstream 100 bases:
>100_bases GCGCAGCTCTCGAAATCGACAATCTCAGCGTCGTCTACGATGAATTTCATGCGCTGAAGGATGTCAGCCTTGCGGTCGAA CGCGGCGAATCCTTTGGCCT
Product: ABC transporter
Products: ADP; phosphate; dipeptides [Cytoplasm] [C]
Alternate protein names: Stage 0 sporulation protein KD [H]
Number of amino acids: Translated: 277; Mature: 276
Protein sequence:
>277_residues MTTLLTVDNLKVSYPTRTGVIEAVRGVSFTLGKERLGIVGESGSGKSQTGRAIMGLTPKHGIVTADRLDFNGIDLLKASA GERRRLRGKRIAMILQDPKYSLDPVMTIGRQICETLRTHEKLGKAEARERALAMLEAVQIRDPKRVFDLHPHEVSGGMGQ RAMIAMMLIAGPELLIADEPTSALDVTVQLDVLRIMDRLVADRGMGLIFVSHDLRLVSSFCDRVIVMYAGKIVEELAAAD LKHAQHPYTQGLLNCMPEIGSNRHPLPVLDRKPEWAA
Sequences:
>Translated_277_residues MTTLLTVDNLKVSYPTRTGVIEAVRGVSFTLGKERLGIVGESGSGKSQTGRAIMGLTPKHGIVTADRLDFNGIDLLKASA GERRRLRGKRIAMILQDPKYSLDPVMTIGRQICETLRTHEKLGKAEARERALAMLEAVQIRDPKRVFDLHPHEVSGGMGQ RAMIAMMLIAGPELLIADEPTSALDVTVQLDVLRIMDRLVADRGMGLIFVSHDLRLVSSFCDRVIVMYAGKIVEELAAAD LKHAQHPYTQGLLNCMPEIGSNRHPLPVLDRKPEWAA >Mature_276_residues TTLLTVDNLKVSYPTRTGVIEAVRGVSFTLGKERLGIVGESGSGKSQTGRAIMGLTPKHGIVTADRLDFNGIDLLKASAG ERRRLRGKRIAMILQDPKYSLDPVMTIGRQICETLRTHEKLGKAEARERALAMLEAVQIRDPKRVFDLHPHEVSGGMGQR AMIAMMLIAGPELLIADEPTSALDVTVQLDVLRIMDRLVADRGMGLIFVSHDLRLVSSFCDRVIVMYAGKIVEELAAADL KHAQHPYTQGLLNCMPEIGSNRHPLPVLDRKPEWAA
Specific function: Part of the binding protein-dependent transport system for oligopeptides. Probably responsible for energy coupling to the transport system. Required for sporulation and competence [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Peripheral membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI153792144, Length=225, Percent_Identity=24.8888888888889, Blast_Score=69, Evalue=7e-12, Organism=Homo sapiens, GI27436953, Length=216, Percent_Identity=24.537037037037, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI156105685, Length=244, Percent_Identity=28.6885245901639, Blast_Score=67, Evalue=3e-11, Organism=Escherichia coli, GI1789963, Length=269, Percent_Identity=45.724907063197, Blast_Score=231, Evalue=3e-62, Organism=Escherichia coli, GI48994883, Length=258, Percent_Identity=45.3488372093023, Blast_Score=224, Evalue=6e-60, Organism=Escherichia coli, GI1787759, Length=269, Percent_Identity=43.8661710037175, Blast_Score=219, Evalue=2e-58, Organism=Escherichia coli, GI145693107, Length=267, Percent_Identity=43.0711610486891, Blast_Score=211, Evalue=5e-56, Organism=Escherichia coli, GI1787548, Length=265, Percent_Identity=39.2452830188679, Blast_Score=191, Evalue=4e-50, Organism=Escherichia coli, GI1788506, Length=259, Percent_Identity=42.8571428571429, Blast_Score=187, Evalue=6e-49, Organism=Escherichia coli, GI1787500, Length=267, Percent_Identity=41.5730337078652, Blast_Score=171, Evalue=5e-44, Organism=Escherichia coli, GI1789962, Length=267, Percent_Identity=37.4531835205993, Blast_Score=163, Evalue=1e-41, Organism=Escherichia coli, GI1787758, Length=284, Percent_Identity=35.2112676056338, Blast_Score=142, Evalue=3e-35, Organism=Escherichia coli, GI1789890, Length=233, Percent_Identity=37.3390557939914, Blast_Score=128, Evalue=4e-31, Organism=Escherichia coli, GI1789891, Length=213, Percent_Identity=37.5586854460094, Blast_Score=123, Evalue=2e-29, Organism=Escherichia coli, GI48994997, Length=256, Percent_Identity=35.9375, Blast_Score=119, Evalue=3e-28, Organism=Escherichia coli, GI1787547, Length=246, Percent_Identity=31.7073170731707, Blast_Score=110, Evalue=1e-25, Organism=Escherichia coli, GI87081834, Length=238, Percent_Identity=34.453781512605, Blast_Score=96, Evalue=2e-21, Organism=Escherichia coli, GI1789672, Length=256, Percent_Identity=31.25, Blast_Score=95, Evalue=6e-21, Organism=Escherichia coli, GI1789032, Length=220, Percent_Identity=32.7272727272727, Blast_Score=89, Evalue=2e-19, Organism=Escherichia coli, GI1786872, Length=197, Percent_Identity=35.5329949238579, Blast_Score=89, Evalue=3e-19, Organism=Escherichia coli, GI87081791, Length=240, Percent_Identity=33.3333333333333, Blast_Score=88, Evalue=5e-19, Organism=Escherichia coli, GI1788761, Length=260, Percent_Identity=28.0769230769231, Blast_Score=88, Evalue=6e-19, Organism=Escherichia coli, GI1787105, Length=234, Percent_Identity=32.9059829059829, Blast_Score=86, Evalue=2e-18, Organism=Escherichia coli, GI1786398, Length=253, Percent_Identity=27.2727272727273, Blast_Score=86, Evalue=3e-18, Organism=Escherichia coli, GI1789991, Length=251, Percent_Identity=29.0836653386454, Blast_Score=85, Evalue=4e-18, Organism=Escherichia coli, GI1788644, Length=179, Percent_Identity=36.8715083798883, Blast_Score=85, Evalue=5e-18, Organism=Escherichia coli, GI1787089, Length=224, Percent_Identity=29.4642857142857, Blast_Score=84, Evalue=1e-17, Organism=Escherichia coli, GI1787792, Length=240, Percent_Identity=30.8333333333333, Blast_Score=82, Evalue=5e-17, Organism=Escherichia coli, GI1788225, Length=223, Percent_Identity=31.390134529148, Blast_Score=81, Evalue=8e-17, Organism=Escherichia coli, GI1786319, Length=271, Percent_Identity=27.3062730627306, Blast_Score=79, Evalue=3e-16, Organism=Escherichia coli, GI1790739, Length=276, Percent_Identity=27.8985507246377, Blast_Score=79, Evalue=4e-16, Organism=Escherichia coli, GI1786345, Length=243, Percent_Identity=27.9835390946502, Blast_Score=78, Evalue=8e-16, Organism=Escherichia coli, GI1787370, Length=199, Percent_Identity=30.6532663316583, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI1786803, Length=210, Percent_Identity=29.5238095238095, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI1787029, Length=198, Percent_Identity=30.8080808080808, Blast_Score=76, Evalue=3e-15, Organism=Escherichia coli, GI1786703, Length=236, Percent_Identity=30.0847457627119, Blast_Score=74, Evalue=7e-15, Organism=Escherichia coli, GI1788165, Length=230, Percent_Identity=28.695652173913, Blast_Score=72, Evalue=3e-14, Organism=Escherichia coli, GI1787712, Length=255, Percent_Identity=28.6274509803922, Blast_Score=72, Evalue=3e-14, Organism=Escherichia coli, GI48995001, Length=220, Percent_Identity=29.0909090909091, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI1790162, Length=243, Percent_Identity=28.3950617283951, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI1789873, Length=213, Percent_Identity=29.1079812206573, Blast_Score=69, Evalue=4e-13, Organism=Escherichia coli, GI1790525, Length=236, Percent_Identity=25.8474576271186, Blast_Score=69, Evalue=4e-13, Organism=Escherichia coli, GI1789586, Length=230, Percent_Identity=28.2608695652174, Blast_Score=68, Evalue=8e-13, Organism=Escherichia coli, GI48994943, Length=247, Percent_Identity=29.9595141700405, Blast_Score=67, Evalue=9e-13, Organism=Escherichia coli, GI1789593, Length=243, Percent_Identity=25.5144032921811, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI87081709, Length=232, Percent_Identity=28.0172413793103, Blast_Score=67, Evalue=2e-12, Organism=Escherichia coli, GI1790467, Length=210, Percent_Identity=26.6666666666667, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI1788450, Length=198, Percent_Identity=26.7676767676768, Blast_Score=62, Evalue=5e-11, Organism=Escherichia coli, GI1790190, Length=226, Percent_Identity=27.4336283185841, Blast_Score=62, Evalue=6e-11, Organism=Caenorhabditis elegans, GI25146777, Length=251, Percent_Identity=27.4900398406374, Blast_Score=79, Evalue=3e-15, Organism=Caenorhabditis elegans, GI193209708, Length=232, Percent_Identity=31.0344827586207, Blast_Score=77, Evalue=1e-14, Organism=Caenorhabditis elegans, GI71996809, Length=235, Percent_Identity=28.0851063829787, Blast_Score=76, Evalue=2e-14, Organism=Caenorhabditis elegans, GI193211017, Length=235, Percent_Identity=28.0851063829787, Blast_Score=74, Evalue=7e-14, Organism=Caenorhabditis elegans, GI193211015, Length=235, Percent_Identity=28.0851063829787, Blast_Score=74, Evalue=7e-14, Organism=Caenorhabditis elegans, GI212646699, Length=235, Percent_Identity=27.2340425531915, Blast_Score=72, Evalue=4e-13, Organism=Caenorhabditis elegans, GI115534520, Length=237, Percent_Identity=27.4261603375527, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI193202349, Length=249, Percent_Identity=28.5140562248996, Blast_Score=69, Evalue=2e-12, Organism=Drosophila melanogaster, GI17136662, Length=240, Percent_Identity=28.3333333333333, Blast_Score=64, Evalue=9e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 - InterPro: IPR010066 - InterPro: IPR013563 [H]
Pfam domain/function: PF00005 ABC_tran; PF08352 oligo_HPY [H]
EC number: NA
Molecular weight: Translated: 30463; Mature: 30332
Theoretical pI: Translated: 9.18; Mature: 9.18
Prosite motif: PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 4.7 %Met (Translated Protein) 5.8 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 4.3 %Met (Mature Protein) 5.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTLLTVDNLKVSYPTRTGVIEAVRGVSFTLGKERLGIVGESGSGKSQTGRAIMGLTPKH CCEEEEECCEEEECCCHHHHHHHHHCCEEEECCHHEEEEECCCCCCCCCCCEEEECCCCC GIVTADRLDFNGIDLLKASAGERRRLRGKRIAMILQDPKYSLDPVMTIGRQICETLRTHE CEEEECCCCCCCCHHHHCCCCHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHH KLGKAEARERALAMLEAVQIRDPKRVFDLHPHEVSGGMGQRAMIAMMLIAGPELLIADEP HHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCHHCCCCCCHHHHHHHHHHCCCCEEEECCC TSALDVTVQLDVLRIMDRLVADRGMGLIFVSHDLRLVSSFCDRVIVMYAGKIVEELAAAD CCCEEEEEHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHH LKHAQHPYTQGLLNCMPEIGSNRHPLPVLDRKPEWAA HHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC >Mature Secondary Structure TTLLTVDNLKVSYPTRTGVIEAVRGVSFTLGKERLGIVGESGSGKSQTGRAIMGLTPKH CEEEEECCEEEECCCHHHHHHHHHCCEEEECCHHEEEEECCCCCCCCCCCEEEECCCCC GIVTADRLDFNGIDLLKASAGERRRLRGKRIAMILQDPKYSLDPVMTIGRQICETLRTHE CEEEECCCCCCCCHHHHCCCCHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHH KLGKAEARERALAMLEAVQIRDPKRVFDLHPHEVSGGMGQRAMIAMMLIAGPELLIADEP HHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCHHCCCCCCHHHHHHHHHHCCCCEEEECCC TSALDVTVQLDVLRIMDRLVADRGMGLIFVSHDLRLVSSFCDRVIVMYAGKIVEELAAAD CCCEEEEEHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHH LKHAQHPYTQGLLNCMPEIGSNRHPLPVLDRKPEWAA HHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; dipeptides [Periplasm]; H2O [C]
Specific reaction: ATP + dipeptides [Periplasm] + H2O = ADP + phosphate + dipeptides [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 1901616; 1899858; 9384377 [H]