| Definition | Rhizobium leguminosarum bv. trifolii WSM2304 chromosome, complete genome. |
|---|---|
| Accession | NC_011369 |
| Length | 4,537,948 |
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The map label for this gene is dcp [H]
Identifier: 209551283
GI number: 209551283
Start: 3838192
End: 3840279
Strand: Reverse
Name: dcp [H]
Synonym: Rleg2_3711
Alternate gene names: 209551283
Gene position: 3840279-3838192 (Counterclockwise)
Preceding gene: 209551285
Following gene: 209551282
Centisome position: 84.63
GC content: 62.26
Gene sequence:
>2088_bases ATGCCTTCTCCCCATGATTTCAATCCGGCGCTGGTGACTTGGGACGGCCTTCACGGCCTGCCGCGTTTCGATGCCGTCGA TGACGGCGATTTCGCTGCCGCCTTCGAAGCGGCGCTTGCCGCCCATGAACGGGAGATCGACGAGATTGCCGGAAATGCCG AGGCGCCGACATTCGACAATACGGTCACGGCGCTGGAGATAGCCGGCGATGCACTGTCGCGCGTTTCGGCGCTGTTCTGG AACAAGGCGGGCGCGCATACCAATGATGTGATCCAGGCGCTGGAGCGGGAGATCTCGCCGAAGATGTCGCGCCACTATTC GAAGATCGGCATGAATGCCGCGCTCTTTTCCCGCATCGACACGCTTTGGGAGAAACGCGAAAGCCTCGGCTTGACGCTCG AGCAGACACGCGTGCTGGAGCGCCACTGGAAAGGCTTCGTCAAATCCGGCGCCAAGCTCGAGAAGGCCGAACAGGAGAAA CTGGCAGCGATCAATGAAAAGCTTGCCGGCCTCAGCACGCAATTCGGCCAGAACGTGCTCGCCGACGAGAAGGCCTGGGC ACTCACGCTGTCTTCTGGAGCCGAGCTCGACGGGCTGCCGGAATTTTTGCGGGACGCCATGGCCGCAGCTGCACGCGAAC GCGGTGAAGAGGGCAAATATGCGGTGACGCTGTCACGCTCGATCATCGAGCCGTTCCTGACCTTTTCGGAGCGCCGCGAC CTGCGCGAGCAGGCTTTCAAGGCGTGGGTGGCGCGCGGCGAAAATGACGGCGAGACGGACAATCGCGCCGTTATCCGAGA AACGCTGGCGCTGCGCCATCAGGTGGCGAGCCTGCTTGGTTACGGCAATTTCGCCGAGCTGAAGCTCGACAACACGATGG CAAAGACGGCGGAGGCGGTGAACGACCTGCTCAAAGCGGTCTGGGCGCGGGCGGTGAAACGCGCCGGCGAGGAGGAGGCC GACATTGCCGCGCTGATCGCCGAGGAAGGGCGCAACCACGAGGTGATGCCCTGGGACTGGCGCCATTACGCCGAAAAGAT TAGGGCGCGGAAATTCGATTTTTCCGAGGCCGAGCTCAAGCCCTATCTGCAGCTCGAGAAGATCGTCGAAGCCTGCTTCG ACGTGGCCGGCCGGCTCTTCGGCATCCGCGCCGTCGAGAAGAAGGGCGTGGCCGCCTATCATCCGGATGTCAGGGTGTTC GAAATCAGGGATCGCGAAGATCGGCTGGTCGCGCTTTTCCTTGGCGATTATTTCGCCCGTGGCTCGAAACGATCAGGCGC CTGGATGAGCTCGCTGCAATCGCAGCATAGGCTGGAGCTGAAGAACGGCCGCCACGGCGAGCTGCCGATCATCTACAATG TCTGCAACTTCGCCAAACCCGCCGAGGGCAAGCCGGCGCTGCTGTCGCTCGACGATGCGCGCACGCTGTTCCACGAATTC GGCCACGCGCTGCACGGCATGCTTTCTGATGTCACCTACCCCTCGGTCTCCGGCACCAGCGTTTCGCGCGATTTCGTCGA GCTGCCGTCGCAGCTCTACGAGCACTGGCTGACGGTGCCCGCTATTCTGAAGCGCTATGCCGTGCATGTCGAAACCGGCG AGCCGATGCCGCAGGCGCTGCTCGACAAGGTGCTGGCGGCGCGCACCTTCAATGCCGGCTTCAACACCGTCGAGTTCACC TCGTCGGCGCTGGTTGATATGGCCTTTCACACGCGGGAGGCGGTTGCGGATCCGATGGCGGTGCAGGCCGAGGTGCTTGC CGAGATCGGCATGCCGAAATCGATCGTCATGCGCCACGCGACGCCGCACTTCCAGCACATTTTCTCCGGCGGTTATTCGG CCGGCTATTACTCCTATATGTGGTCGGAGGTGCTCGACGCCGACGCCTTTGCCGCTTTCGAGGAGACGGGAGACGCATTC AACGGCGAGATGGCGCGCAAGCTCAAGGAAAACATCTATTCCGTCGGTGGCTCGGTCGATCCGGAGGACGCCTATAAGGC TTTCCGCGGCAAGCTGCCGAGCCCCGATGCGATGCTGGTCAAAAAGGGACTTTCGACCTTCGAGGAATTGACAGGCAGCG ACGCCTAA
Upstream 100 bases:
>100_bases CCAGATTTTGCAGGCGAGTCAAAAGACCCTTCCCGCATACCAATTCTACGACAGCTCTCCTATATTGACGAACCCGTGCA TGCCAAAAAGGAATTCTCCG
Downstream 100 bases:
>100_bases GACAATTTGATGACACGCTTCGATGCGGCATGGCGGCAGCCATGCCGCAGCTTTTGCGCGTTCCCCTCTTTCGCAAACGC AAAAAAAACTGTATGGACGC
Product: peptidyl-dipeptidase Dcp
Products: NA
Alternate protein names: Dipeptidyl carboxypeptidase [H]
Number of amino acids: Translated: 695; Mature: 694
Protein sequence:
>695_residues MPSPHDFNPALVTWDGLHGLPRFDAVDDGDFAAAFEAALAAHEREIDEIAGNAEAPTFDNTVTALEIAGDALSRVSALFW NKAGAHTNDVIQALEREISPKMSRHYSKIGMNAALFSRIDTLWEKRESLGLTLEQTRVLERHWKGFVKSGAKLEKAEQEK LAAINEKLAGLSTQFGQNVLADEKAWALTLSSGAELDGLPEFLRDAMAAAARERGEEGKYAVTLSRSIIEPFLTFSERRD LREQAFKAWVARGENDGETDNRAVIRETLALRHQVASLLGYGNFAELKLDNTMAKTAEAVNDLLKAVWARAVKRAGEEEA DIAALIAEEGRNHEVMPWDWRHYAEKIRARKFDFSEAELKPYLQLEKIVEACFDVAGRLFGIRAVEKKGVAAYHPDVRVF EIRDREDRLVALFLGDYFARGSKRSGAWMSSLQSQHRLELKNGRHGELPIIYNVCNFAKPAEGKPALLSLDDARTLFHEF GHALHGMLSDVTYPSVSGTSVSRDFVELPSQLYEHWLTVPAILKRYAVHVETGEPMPQALLDKVLAARTFNAGFNTVEFT SSALVDMAFHTREAVADPMAVQAEVLAEIGMPKSIVMRHATPHFQHIFSGGYSAGYYSYMWSEVLDADAFAAFEETGDAF NGEMARKLKENIYSVGGSVDPEDAYKAFRGKLPSPDAMLVKKGLSTFEELTGSDA
Sequences:
>Translated_695_residues MPSPHDFNPALVTWDGLHGLPRFDAVDDGDFAAAFEAALAAHEREIDEIAGNAEAPTFDNTVTALEIAGDALSRVSALFW NKAGAHTNDVIQALEREISPKMSRHYSKIGMNAALFSRIDTLWEKRESLGLTLEQTRVLERHWKGFVKSGAKLEKAEQEK LAAINEKLAGLSTQFGQNVLADEKAWALTLSSGAELDGLPEFLRDAMAAAARERGEEGKYAVTLSRSIIEPFLTFSERRD LREQAFKAWVARGENDGETDNRAVIRETLALRHQVASLLGYGNFAELKLDNTMAKTAEAVNDLLKAVWARAVKRAGEEEA DIAALIAEEGRNHEVMPWDWRHYAEKIRARKFDFSEAELKPYLQLEKIVEACFDVAGRLFGIRAVEKKGVAAYHPDVRVF EIRDREDRLVALFLGDYFARGSKRSGAWMSSLQSQHRLELKNGRHGELPIIYNVCNFAKPAEGKPALLSLDDARTLFHEF GHALHGMLSDVTYPSVSGTSVSRDFVELPSQLYEHWLTVPAILKRYAVHVETGEPMPQALLDKVLAARTFNAGFNTVEFT SSALVDMAFHTREAVADPMAVQAEVLAEIGMPKSIVMRHATPHFQHIFSGGYSAGYYSYMWSEVLDADAFAAFEETGDAF NGEMARKLKENIYSVGGSVDPEDAYKAFRGKLPSPDAMLVKKGLSTFEELTGSDA >Mature_694_residues PSPHDFNPALVTWDGLHGLPRFDAVDDGDFAAAFEAALAAHEREIDEIAGNAEAPTFDNTVTALEIAGDALSRVSALFWN KAGAHTNDVIQALEREISPKMSRHYSKIGMNAALFSRIDTLWEKRESLGLTLEQTRVLERHWKGFVKSGAKLEKAEQEKL AAINEKLAGLSTQFGQNVLADEKAWALTLSSGAELDGLPEFLRDAMAAAARERGEEGKYAVTLSRSIIEPFLTFSERRDL REQAFKAWVARGENDGETDNRAVIRETLALRHQVASLLGYGNFAELKLDNTMAKTAEAVNDLLKAVWARAVKRAGEEEAD IAALIAEEGRNHEVMPWDWRHYAEKIRARKFDFSEAELKPYLQLEKIVEACFDVAGRLFGIRAVEKKGVAAYHPDVRVFE IRDREDRLVALFLGDYFARGSKRSGAWMSSLQSQHRLELKNGRHGELPIIYNVCNFAKPAEGKPALLSLDDARTLFHEFG HALHGMLSDVTYPSVSGTSVSRDFVELPSQLYEHWLTVPAILKRYAVHVETGEPMPQALLDKVLAARTFNAGFNTVEFTS SALVDMAFHTREAVADPMAVQAEVLAEIGMPKSIVMRHATPHFQHIFSGGYSAGYYSYMWSEVLDADAFAAFEETGDAFN GEMARKLKENIYSVGGSVDPEDAYKAFRGKLPSPDAMLVKKGLSTFEELTGSDA
Specific function: Removes dipeptides from the C-termini of N-blocked tripeptides, tetrapeptides and larger peptides [H]
COG id: COG0339
COG function: function code E; Zn-dependent oligopeptidases
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase M3 family [H]
Homologues:
Organism=Homo sapiens, GI4507491, Length=615, Percent_Identity=31.5447154471545, Blast_Score=254, Evalue=3e-67, Organism=Homo sapiens, GI14149738, Length=609, Percent_Identity=27.5862068965517, Blast_Score=204, Evalue=2e-52, Organism=Homo sapiens, GI156105687, Length=672, Percent_Identity=24.8511904761905, Blast_Score=173, Evalue=5e-43, Organism=Escherichia coli, GI1787819, Length=684, Percent_Identity=40.6432748538012, Blast_Score=481, Evalue=1e-137, Organism=Escherichia coli, GI1789913, Length=691, Percent_Identity=36.0347322720695, Blast_Score=385, Evalue=1e-108, Organism=Caenorhabditis elegans, GI32565901, Length=631, Percent_Identity=21.0776545166403, Blast_Score=89, Evalue=1e-17, Organism=Caenorhabditis elegans, GI71999758, Length=584, Percent_Identity=21.5753424657534, Blast_Score=74, Evalue=4e-13, Organism=Saccharomyces cerevisiae, GI6319793, Length=592, Percent_Identity=26.1824324324324, Blast_Score=200, Evalue=6e-52, Organism=Saccharomyces cerevisiae, GI6322715, Length=731, Percent_Identity=22.5718194254446, Blast_Score=125, Evalue=3e-29, Organism=Drosophila melanogaster, GI21356111, Length=513, Percent_Identity=25.1461988304094, Blast_Score=168, Evalue=1e-41, Organism=Drosophila melanogaster, GI20129717, Length=458, Percent_Identity=24.235807860262, Blast_Score=131, Evalue=1e-30,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001567 [H]
Pfam domain/function: PF01432 Peptidase_M3 [H]
EC number: =3.4.15.5 [H]
Molecular weight: Translated: 77108; Mature: 76977
Theoretical pI: Translated: 5.31; Mature: 5.31
Prosite motif: PS00142 ZINC_PROTEASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPSPHDFNPALVTWDGLHGLPRFDAVDDGDFAAAFEAALAAHEREIDEIAGNAEAPTFDN CCCCCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC TVTALEIAGDALSRVSALFWNKAGAHTNDVIQALEREISPKMSRHYSKIGMNAALFSRID CHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHH TLWEKRESLGLTLEQTRVLERHWKGFVKSGAKLEKAEQEKLAAINEKLAGLSTQFGQNVL HHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHH ADEKAWALTLSSGAELDGLPEFLRDAMAAAARERGEEGKYAVTLSRSIIEPFLTFSERRD CCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHH LREQAFKAWVARGENDGETDNRAVIRETLALRHQVASLLGYGNFAELKLDNTMAKTAEAV HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHH NDLLKAVWARAVKRAGEEEADIAALIAEEGRNHEVMPWDWRHYAEKIRARKFDFSEAELK HHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHH PYLQLEKIVEACFDVAGRLFGIRAVEKKGVAAYHPDVRVFEIRDREDRLVALFLGDYFAR HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCEEEEECCCCCCEEEEHHHHHHHC GSKRSGAWMSSLQSQHRLELKNGRHGELPIIYNVCNFAKPAEGKPALLSLDDARTLFHEF CCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEHHCCCCCCCCCCCEEECHHHHHHHHHH GHALHGMLSDVTYPSVSGTSVSRDFVELPSQLYEHWLTVPAILKRYAVHVETGEPMPQAL HHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCHHHH LDKVLAARTFNAGFNTVEFTSSALVDMAFHTREAVADPMAVQAEVLAEIGMPKSIVMRHA HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHCC TPHFQHIFSGGYSAGYYSYMWSEVLDADAFAAFEETGDAFNGEMARKLKENIYSVGGSVD CHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCC PEDAYKAFRGKLPSPDAMLVKKGLSTFEELTGSDA HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure PSPHDFNPALVTWDGLHGLPRFDAVDDGDFAAAFEAALAAHEREIDEIAGNAEAPTFDN CCCCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC TVTALEIAGDALSRVSALFWNKAGAHTNDVIQALEREISPKMSRHYSKIGMNAALFSRID CHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHH TLWEKRESLGLTLEQTRVLERHWKGFVKSGAKLEKAEQEKLAAINEKLAGLSTQFGQNVL HHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHH ADEKAWALTLSSGAELDGLPEFLRDAMAAAARERGEEGKYAVTLSRSIIEPFLTFSERRD CCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHH LREQAFKAWVARGENDGETDNRAVIRETLALRHQVASLLGYGNFAELKLDNTMAKTAEAV HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHH NDLLKAVWARAVKRAGEEEADIAALIAEEGRNHEVMPWDWRHYAEKIRARKFDFSEAELK HHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHH PYLQLEKIVEACFDVAGRLFGIRAVEKKGVAAYHPDVRVFEIRDREDRLVALFLGDYFAR HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCEEEEECCCCCCEEEEHHHHHHHC GSKRSGAWMSSLQSQHRLELKNGRHGELPIIYNVCNFAKPAEGKPALLSLDDARTLFHEF CCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEHHCCCCCCCCCCCEEECHHHHHHHHHH GHALHGMLSDVTYPSVSGTSVSRDFVELPSQLYEHWLTVPAILKRYAVHVETGEPMPQAL HHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCHHHH LDKVLAARTFNAGFNTVEFTSSALVDMAFHTREAVADPMAVQAEVLAEIGMPKSIVMRHA HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHCC TPHFQHIFSGGYSAGYYSYMWSEVLDADAFAAFEETGDAFNGEMARKLKENIYSVGGSVD CHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCC PEDAYKAFRGKLPSPDAMLVKKGLSTFEELTGSDA HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8226676; 9097039; 9278503 [H]