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The map label for this gene is ydhC [H]

Identifier: 209551242

GI number: 209551242

Start: 3799332

End: 3800042

Strand: Direct

Name: ydhC [H]

Synonym: Rleg2_3670

Alternate gene names: 209551242

Gene position: 3799332-3800042 (Clockwise)

Preceding gene: 209551234

Following gene: 209551243

Centisome position: 83.72

GC content: 60.9

Gene sequence:

>711_bases
TTGGCCGAAACAAGTGATTTTAGAGCGCAGCCACCCGAAGGGATCGACGCGATCGGAGCCTCCAGTGAGGGCGCCTCGCT
CTATCAGCTGATCAGGGACGACATCATTGAAGGGCGGCTTGCTGCCAACGAACGGCTTGTGGTCACCGACCTCGCCCGCC
GCCACGGCACCTCGACCAACCCCGTGCGCGAGGCTCTGCAACTGTTGCGCGGGGAGGGCTTTGTCACCTTCGTTCCCAAC
CGCGGAGCGCGCGTCCGCCCCATAGATCAGGATTTTGTTCGGGACATCTACGAGATAGGAGTCTTGATCGAGCCGGCACT
GACGCGATGGTTCGTGAATATGGCCACCGTCGAGGACATTGCTGAACTCGAACGCATCCAAGACTTGATTGAAGAGAACA
ACTTCGCCGACACGTTTAGGCACAGCGAGCTAGACACCGCCTTTCACACCGTCATGTACCAAAGGCACTACAACCGCCAT
GCCGCCGAGCTTTGGTGGAAGCATCGCGAAGTGCTTCGAGCCGTGAGCCGGCGTTTCAACTTCACGCTCGCCCGGCGCGC
CGCGATCCTGAGCGAGCATCGCGAGCTCATCGCGCATGTCAAAGCGGGAAATGCGAACGAGGCAGGCGAACTCATTGCAC
GCCATGTCGAGGGCTCCGGCCGGCACATCCTGGAACACATGCGTGCGCGGAACGCCGCTCGCGCAGGATAG

Upstream 100 bases:

>100_bases
TTTTCAGATCACAGATTGCCTGTCAACTGGAGAAATCGTACATTGTTTGCATAAACCTCGCGTGATATCGAAGGAATATA
TGTATTGATTGGGGACAGCT

Downstream 100 bases:

>100_bases
AAGCCATCGCCCGGAATATCGTTATCCCGACCACTTCAGACAAAGGCAGTTGAGATGAAAATCACCAGCGTTCGGCCGTG
GCTGATCAAGTCCGATGCTT

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 236; Mature: 235

Protein sequence:

>236_residues
MAETSDFRAQPPEGIDAIGASSEGASLYQLIRDDIIEGRLAANERLVVTDLARRHGTSTNPVREALQLLRGEGFVTFVPN
RGARVRPIDQDFVRDIYEIGVLIEPALTRWFVNMATVEDIAELERIQDLIEENNFADTFRHSELDTAFHTVMYQRHYNRH
AAELWWKHREVLRAVSRRFNFTLARRAAILSEHRELIAHVKAGNANEAGELIARHVEGSGRHILEHMRARNAARAG

Sequences:

>Translated_236_residues
MAETSDFRAQPPEGIDAIGASSEGASLYQLIRDDIIEGRLAANERLVVTDLARRHGTSTNPVREALQLLRGEGFVTFVPN
RGARVRPIDQDFVRDIYEIGVLIEPALTRWFVNMATVEDIAELERIQDLIEENNFADTFRHSELDTAFHTVMYQRHYNRH
AAELWWKHREVLRAVSRRFNFTLARRAAILSEHRELIAHVKAGNANEAGELIARHVEGSGRHILEHMRARNAARAG
>Mature_235_residues
AETSDFRAQPPEGIDAIGASSEGASLYQLIRDDIIEGRLAANERLVVTDLARRHGTSTNPVREALQLLRGEGFVTFVPNR
GARVRPIDQDFVRDIYEIGVLIEPALTRWFVNMATVEDIAELERIQDLIEENNFADTFRHSELDTAFHTVMYQRHYNRHA
AELWWKHREVLRAVSRRFNFTLARRAAILSEHRELIAHVKAGNANEAGELIARHVEGSGRHILEHMRARNAARAG

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000485
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 26866; Mature: 26734

Theoretical pI: Translated: 6.75; Mature: 6.75

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAETSDFRAQPPEGIDAIGASSEGASLYQLIRDDIIEGRLAANERLVVTDLARRHGTSTN
CCCCCCCCCCCCCCCHHCCCCCCCHHHHHHHHHHHHHCHHCCCCCHHHHHHHHHCCCCCH
PVREALQLLRGEGFVTFVPNRGARVRPIDQDFVRDIYEIGVLIEPALTRWFVNMATVEDI
HHHHHHHHHHCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AELERIQDLIEENNFADTFRHSELDTAFHTVMYQRHYNRHAAELWWKHREVLRAVSRRFN
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FTLARRAAILSEHRELIAHVKAGNANEAGELIARHVEGSGRHILEHMRARNAARAG
HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
AETSDFRAQPPEGIDAIGASSEGASLYQLIRDDIIEGRLAANERLVVTDLARRHGTSTN
CCCCCCCCCCCCCCHHCCCCCCCHHHHHHHHHHHHHCHHCCCCCHHHHHHHHHCCCCCH
PVREALQLLRGEGFVTFVPNRGARVRPIDQDFVRDIYEIGVLIEPALTRWFVNMATVEDI
HHHHHHHHHHCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AELERIQDLIEENNFADTFRHSELDTAFHTVMYQRHYNRHAAELWWKHREVLRAVSRRFN
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FTLARRAAILSEHRELIAHVKAGNANEAGELIARHVEGSGRHILEHMRARNAARAG
HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]