| Definition | Rhizobium leguminosarum bv. trifolii WSM2304 chromosome, complete genome. |
|---|---|
| Accession | NC_011369 |
| Length | 4,537,948 |
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The map label for this gene is ybbO [H]
Identifier: 209551133
GI number: 209551133
Start: 3685959
End: 3686792
Strand: Direct
Name: ybbO [H]
Synonym: Rleg2_3557
Alternate gene names: 209551133
Gene position: 3685959-3686792 (Clockwise)
Preceding gene: 209551131
Following gene: 209551134
Centisome position: 81.23
GC content: 62.71
Gene sequence:
>834_bases ATGGCGGCAGAGCGCAGCATCGTCGTGACCGGATGCTCGTCCGGTATCGGTGCGCATTGCGCGCGGGCGCTGAAAGCCGA TGGATGGCGCGTCTTCGCGACGGTGCGCAAACCGGAAGATTTGCCGGCGCTGGAAGCCGACGGCATCGAAGCCTTCCTGA TGGATTATGCCAGGCCCGAGACGATTTCCCAGCTGGTCGATACCGTGTTGCAACGCAGCGGCGGCCGCATCGACGCGCTA TTCAACAACGGCGCCTACGGCCAGCCGGGCGCCGTCGAGGATCTTTCGACGGCAACGCTGCGCGCCCAGTTCGAGGCGAA TTTCTTCGGCTGGCACGAATTGACGCGGCAGGTGATCCCGGCAATGCGCAAATACGGCCAGGGCCGGATCGTGCAATGCT CGTCCATCCTCGGCGTCGTGCCCTATCGCTATCGCGGCGCCTATACCGCCTCCAAGTTTGCGCTCGAAGGCCTCAGCATC ACCCTGCGCATGGAACTGCAGGGCAGCGGCATCCATGTGAGCCTGATCGAGCCCGGACCGATCGCGACGCGTTTCACCAC CAACGCACTCGCCAAGATCCGCGAGCATATCGACGTCGAGAATTCGCCGCACGCGGCCGACTATGTCAGGCAACTGGCAA GACTCGACGGATCGGGCCCGGTCAACCGCCACAAGCTTGGCCCGGAGGCGGTCTATTCCGTCTTGAAACACGCATTGAAC TCGAAAAATCCGAGGCCACATTATCCCGTAACGACACCGGCCAAGCAGGGCATGTTCCTGAAGCGGCTGCTTCCGGCAGA CCTCTTCTACCGCCTGATGCGCTGGACAGACTGA
Upstream 100 bases:
>100_bases GATCGTGCGCAGCGCCTTCGGCATTCCGTTCCCGGCTTTCCAGATTGTATCCTCTGGCCGAATATGGGAAACGAGTCCCA TTTTGTACAGGAATCATTCC
Downstream 100 bases:
>100_bases GAAAGCTGAATGCCATGTCCACGGTCACCTATATCCTCGCGATCATCGTCATGGGCTGCGTCGCCCTGGTCCTGATCCGC GGCCTCTTCAACATGATGAA
Product: short chain dehydrogenase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 277; Mature: 276
Protein sequence:
>277_residues MAAERSIVVTGCSSGIGAHCARALKADGWRVFATVRKPEDLPALEADGIEAFLMDYARPETISQLVDTVLQRSGGRIDAL FNNGAYGQPGAVEDLSTATLRAQFEANFFGWHELTRQVIPAMRKYGQGRIVQCSSILGVVPYRYRGAYTASKFALEGLSI TLRMELQGSGIHVSLIEPGPIATRFTTNALAKIREHIDVENSPHAADYVRQLARLDGSGPVNRHKLGPEAVYSVLKHALN SKNPRPHYPVTTPAKQGMFLKRLLPADLFYRLMRWTD
Sequences:
>Translated_277_residues MAAERSIVVTGCSSGIGAHCARALKADGWRVFATVRKPEDLPALEADGIEAFLMDYARPETISQLVDTVLQRSGGRIDAL FNNGAYGQPGAVEDLSTATLRAQFEANFFGWHELTRQVIPAMRKYGQGRIVQCSSILGVVPYRYRGAYTASKFALEGLSI TLRMELQGSGIHVSLIEPGPIATRFTTNALAKIREHIDVENSPHAADYVRQLARLDGSGPVNRHKLGPEAVYSVLKHALN SKNPRPHYPVTTPAKQGMFLKRLLPADLFYRLMRWTD >Mature_276_residues AAERSIVVTGCSSGIGAHCARALKADGWRVFATVRKPEDLPALEADGIEAFLMDYARPETISQLVDTVLQRSGGRIDALF NNGAYGQPGAVEDLSTATLRAQFEANFFGWHELTRQVIPAMRKYGQGRIVQCSSILGVVPYRYRGAYTASKFALEGLSIT LRMELQGSGIHVSLIEPGPIATRFTTNALAKIREHIDVENSPHAADYVRQLARLDGSGPVNRHKLGPEAVYSVLKHALNS KNPRPHYPVTTPAKQGMFLKRLLPADLFYRLMRWTD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI7657478, Length=221, Percent_Identity=35.2941176470588, Blast_Score=126, Evalue=2e-29, Organism=Homo sapiens, GI19743808, Length=279, Percent_Identity=30.4659498207885, Blast_Score=105, Evalue=6e-23, Organism=Homo sapiens, GI40548397, Length=266, Percent_Identity=30.8270676691729, Blast_Score=103, Evalue=2e-22, Organism=Homo sapiens, GI214010158, Length=266, Percent_Identity=30.8270676691729, Blast_Score=103, Evalue=2e-22, Organism=Homo sapiens, GI214010156, Length=266, Percent_Identity=30.8270676691729, Blast_Score=103, Evalue=2e-22, Organism=Homo sapiens, GI22758144, Length=266, Percent_Identity=30.8270676691729, Blast_Score=103, Evalue=2e-22, Organism=Homo sapiens, GI223718074, Length=265, Percent_Identity=30.188679245283, Blast_Score=101, Evalue=6e-22, Organism=Homo sapiens, GI119392083, Length=224, Percent_Identity=33.0357142857143, Blast_Score=99, Evalue=5e-21, Organism=Homo sapiens, GI150247226, Length=291, Percent_Identity=28.1786941580756, Blast_Score=96, Evalue=5e-20, Organism=Homo sapiens, GI7706318, Length=196, Percent_Identity=35.2040816326531, Blast_Score=90, Evalue=2e-18, Organism=Homo sapiens, GI20149619, Length=196, Percent_Identity=32.1428571428571, Blast_Score=89, Evalue=3e-18, Organism=Homo sapiens, GI22507405, Length=258, Percent_Identity=29.4573643410853, Blast_Score=82, Evalue=4e-16, Organism=Homo sapiens, GI4504503, Length=285, Percent_Identity=28.4210526315789, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI44680136, Length=185, Percent_Identity=29.7297297297297, Blast_Score=78, Evalue=8e-15, Organism=Homo sapiens, GI44680133, Length=185, Percent_Identity=29.7297297297297, Blast_Score=78, Evalue=8e-15, Organism=Homo sapiens, GI17738292, Length=185, Percent_Identity=29.7297297297297, Blast_Score=78, Evalue=8e-15, Organism=Homo sapiens, GI32483357, Length=192, Percent_Identity=31.7708333333333, Blast_Score=76, Evalue=3e-14, Organism=Homo sapiens, GI109715829, Length=196, Percent_Identity=28.5714285714286, Blast_Score=75, Evalue=7e-14, Organism=Homo sapiens, GI50726952, Length=287, Percent_Identity=25.7839721254355, Blast_Score=75, Evalue=8e-14, Organism=Homo sapiens, GI5031737, Length=190, Percent_Identity=31.0526315789474, Blast_Score=68, Evalue=9e-12, Organism=Homo sapiens, GI33667109, Length=190, Percent_Identity=31.0526315789474, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI59889578, Length=165, Percent_Identity=29.6969696969697, Blast_Score=65, Evalue=8e-11, Organism=Homo sapiens, GI38348362, Length=176, Percent_Identity=28.4090909090909, Blast_Score=65, Evalue=8e-11, Organism=Escherichia coli, GI1786701, Length=271, Percent_Identity=42.0664206642066, Blast_Score=209, Evalue=2e-55, Organism=Escherichia coli, GI1787335, Length=183, Percent_Identity=28.4153005464481, Blast_Score=69, Evalue=2e-13, Organism=Escherichia coli, GI1787820, Length=191, Percent_Identity=28.7958115183246, Blast_Score=69, Evalue=3e-13, Organism=Escherichia coli, GI1786812, Length=181, Percent_Identity=29.8342541436464, Blast_Score=68, Evalue=8e-13, Organism=Escherichia coli, GI87082100, Length=185, Percent_Identity=30.2702702702703, Blast_Score=65, Evalue=4e-12, Organism=Escherichia coli, GI1788459, Length=184, Percent_Identity=29.3478260869565, Blast_Score=62, Evalue=5e-11, Organism=Caenorhabditis elegans, GI17570069, Length=208, Percent_Identity=29.8076923076923, Blast_Score=83, Evalue=2e-16, Organism=Caenorhabditis elegans, GI71997402, Length=209, Percent_Identity=30.1435406698565, Blast_Score=80, Evalue=9e-16, Organism=Caenorhabditis elegans, GI115534660, Length=257, Percent_Identity=24.9027237354086, Blast_Score=77, Evalue=1e-14, Organism=Caenorhabditis elegans, GI17560676, Length=193, Percent_Identity=31.6062176165803, Blast_Score=74, Evalue=1e-13, Organism=Caenorhabditis elegans, GI193210355, Length=266, Percent_Identity=28.1954887218045, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI17557780, Length=286, Percent_Identity=24.1258741258741, Blast_Score=71, Evalue=6e-13, Organism=Caenorhabditis elegans, GI17507613, Length=272, Percent_Identity=25.7352941176471, Blast_Score=70, Evalue=8e-13, Organism=Caenorhabditis elegans, GI32563809, Length=272, Percent_Identity=25.7352941176471, Blast_Score=70, Evalue=9e-13, Organism=Caenorhabditis elegans, GI17560332, Length=198, Percent_Identity=29.2929292929293, Blast_Score=65, Evalue=3e-11, Organism=Caenorhabditis elegans, GI17565030, Length=226, Percent_Identity=30.0884955752212, Blast_Score=65, Evalue=4e-11, Organism=Saccharomyces cerevisiae, GI6322067, Length=241, Percent_Identity=26.5560165975104, Blast_Score=74, Evalue=2e-14, Organism=Saccharomyces cerevisiae, GI6323882, Length=196, Percent_Identity=29.0816326530612, Blast_Score=70, Evalue=4e-13, Organism=Drosophila melanogaster, GI21358495, Length=196, Percent_Identity=31.6326530612245, Blast_Score=90, Evalue=2e-18, Organism=Drosophila melanogaster, GI24651139, Length=302, Percent_Identity=28.476821192053, Blast_Score=84, Evalue=1e-16, Organism=Drosophila melanogaster, GI28571526, Length=188, Percent_Identity=30.8510638297872, Blast_Score=75, Evalue=4e-14, Organism=Drosophila melanogaster, GI23397609, Length=193, Percent_Identity=29.0155440414508, Blast_Score=75, Evalue=4e-14, Organism=Drosophila melanogaster, GI28571387, Length=196, Percent_Identity=32.6530612244898, Blast_Score=74, Evalue=7e-14, Organism=Drosophila melanogaster, GI24641232, Length=212, Percent_Identity=29.7169811320755, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI24580925, Length=198, Percent_Identity=29.2929292929293, Blast_Score=72, Evalue=4e-13, Organism=Drosophila melanogaster, GI21355319, Length=186, Percent_Identity=28.494623655914, Blast_Score=72, Evalue=5e-13, Organism=Drosophila melanogaster, GI24648693, Length=200, Percent_Identity=32.5, Blast_Score=71, Evalue=9e-13, Organism=Drosophila melanogaster, GI21355889, Length=200, Percent_Identity=32.5, Blast_Score=71, Evalue=9e-13, Organism=Drosophila melanogaster, GI21357041, Length=223, Percent_Identity=27.8026905829596, Blast_Score=68, Evalue=7e-12, Organism=Drosophila melanogaster, GI21356301, Length=193, Percent_Identity=31.6062176165803, Blast_Score=67, Evalue=1e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 30534; Mature: 30403
Theoretical pI: Translated: 9.65; Mature: 9.65
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAAERSIVVTGCSSGIGAHCARALKADGWRVFATVRKPEDLPALEADGIEAFLMDYARPE CCCCCCEEEEECCCCHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHCCHH TISQLVDTVLQRSGGRIDALFNNGAYGQPGAVEDLSTATLRAQFEANFFGWHELTRQVIP HHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHHHHHEEECCCCCCCHHHHHHHHHH AMRKYGQGRIVQCSSILGVVPYRYRGAYTASKFALEGLSITLRMELQGSGIHVSLIEPGP HHHHCCCCCEEEHHHHHHCCCHHHCCCCHHHHHEECCEEEEEEEEECCCCEEEEEECCCC IATRFTTNALAKIREHIDVENSPHAADYVRQLARLDGSGPVNRHKLGPEAVYSVLKHALN CCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCHHCCCHHHHHHHHHHHHC SKNPRPHYPVTTPAKQGMFLKRLLPADLFYRLMRWTD CCCCCCCCCCCCCHHCCHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure AAERSIVVTGCSSGIGAHCARALKADGWRVFATVRKPEDLPALEADGIEAFLMDYARPE CCCCCEEEEECCCCHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHCCHH TISQLVDTVLQRSGGRIDALFNNGAYGQPGAVEDLSTATLRAQFEANFFGWHELTRQVIP HHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHHHHHEEECCCCCCCHHHHHHHHHH AMRKYGQGRIVQCSSILGVVPYRYRGAYTASKFALEGLSITLRMELQGSGIHVSLIEPGP HHHHCCCCCEEEHHHHHHCCCHHHCCCCHHHHHEECCEEEEEEEEECCCCEEEEEECCCC IATRFTTNALAKIREHIDVENSPHAADYVRQLARLDGSGPVNRHKLGPEAVYSVLKHALN CCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCHHCCCHHHHHHHHHHHHC SKNPRPHYPVTTPAKQGMFLKRLLPADLFYRLMRWTD CCCCCCCCCCCCCHHCCHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 12471157 [H]