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The map label for this gene is exoD [H]

Identifier: 209551028

GI number: 209551028

Start: 3567930

End: 3568589

Strand: Reverse

Name: exoD [H]

Synonym: Rleg2_3452

Alternate gene names: 209551028

Gene position: 3568589-3567930 (Counterclockwise)

Preceding gene: 209551030

Following gene: 209551027

Centisome position: 78.64

GC content: 63.94

Gene sequence:

>660_bases
ATGACCATCGAAAACGCCGATTCCCACAGACGCAGAAGACCCCGTCCGCCCCGCCCCAAAGGCCGTCGCCTTTCGTCCAT
CCTGCGGCAGTTGGCCGCCGACCGGAGCCGGGAGCGGATTTCGATCGGCGACCTGTTCCAGACGATGGGCGACAGGGCAA
TCAGCGCGCTGATGCTGATCTTCGCGCTGCCGAACGCCTTTCCCACACCGCCCGGAACGTCGGCAGTGCTCGGCGCGCCG
TTGGTCTTCCTGGCGGTACAGTTGACCTTCGGGCTGAAGCCCTGGCTGCCGAGGGTGATTGCCGACCGTTCGATGCGGCG
GGAGGATTTCGAAACCATTGTCGGCCGCATCCACCGCTGGCTCGCCTGGGCGGAGCGGATGCTGAAACCGAGGTTGGCGA
TCTTCGCCGAGCCGCCCGCCGAATATATCGCCGGGGCCGCATGCCTGCTGCTGTCGATCGTGCTTTTGCTGCCGGTGCCG
CTCGGCAACATGCTGCCGGCGATCACGATCTCGGTCTTCGCTTTCGGCATATTGGGCCGCGACGGGCTTTTTGCGCTGAT
CGGCTTCATCATGACGGCCGTATCGCTGGTCGTTGCCGGTGGCGTGATTTACGGCCTGGTGAAGGCAGCGATCTATCTCG
TCATGCAATGGTTTGCCTGA

Upstream 100 bases:

>100_bases
GCCAAATCGCCATCCACAGCTATTCGCGTCGCATAAGTCATTCAATTGGCATATTGCGCGGCCAAAATCCGAGCCTGCAC
GTCCATCACTCACTGGTATC

Downstream 100 bases:

>100_bases
GTAAGCGCCGGTTATTTGGCGGAGCTCTTTTCAACAGGCTCGACATTTGCCGGAATTTTGTTTTGATCTGGCGCGGTACA
GTTTCAAATCATGTTCGGCG

Product: Exopolysaccharide synthesis ExoD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 219; Mature: 218

Protein sequence:

>219_residues
MTIENADSHRRRRPRPPRPKGRRLSSILRQLAADRSRERISIGDLFQTMGDRAISALMLIFALPNAFPTPPGTSAVLGAP
LVFLAVQLTFGLKPWLPRVIADRSMRREDFETIVGRIHRWLAWAERMLKPRLAIFAEPPAEYIAGAACLLLSIVLLLPVP
LGNMLPAITISVFAFGILGRDGLFALIGFIMTAVSLVVAGGVIYGLVKAAIYLVMQWFA

Sequences:

>Translated_219_residues
MTIENADSHRRRRPRPPRPKGRRLSSILRQLAADRSRERISIGDLFQTMGDRAISALMLIFALPNAFPTPPGTSAVLGAP
LVFLAVQLTFGLKPWLPRVIADRSMRREDFETIVGRIHRWLAWAERMLKPRLAIFAEPPAEYIAGAACLLLSIVLLLPVP
LGNMLPAITISVFAFGILGRDGLFALIGFIMTAVSLVVAGGVIYGLVKAAIYLVMQWFA
>Mature_218_residues
TIENADSHRRRRPRPPRPKGRRLSSILRQLAADRSRERISIGDLFQTMGDRAISALMLIFALPNAFPTPPGTSAVLGAPL
VFLAVQLTFGLKPWLPRVIADRSMRREDFETIVGRIHRWLAWAERMLKPRLAIFAEPPAEYIAGAACLLLSIVLLLPVPL
GNMLPAITISVFAFGILGRDGLFALIGFIMTAVSLVVAGGVIYGLVKAAIYLVMQWFA

Specific function: Required for nodule invasion. Mutations in this gene lead to sensitivity to alkaline conditions which prevents nodule invasion [H]

COG id: COG3932

COG function: function code R; Uncharacterized ABC-type transport system, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To Synechocystis PCC 6803 slr1875 [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010331 [H]

Pfam domain/function: PF06055 ExoD [H]

EC number: NA

Molecular weight: Translated: 24141; Mature: 24010

Theoretical pI: Translated: 11.77; Mature: 11.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIENADSHRRRRPRPPRPKGRRLSSILRQLAADRSRERISIGDLFQTMGDRAISALMLI
CCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
FALPNAFPTPPGTSAVLGAPLVFLAVQLTFGLKPWLPRVIADRSMRREDFETIVGRIHRW
HHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
LAWAERMLKPRLAIFAEPPAEYIAGAACLLLSIVLLLPVPLGNMLPAITISVFAFGILGR
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC
DGLFALIGFIMTAVSLVVAGGVIYGLVKAAIYLVMQWFA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
>Mature Secondary Structure 
TIENADSHRRRRPRPPRPKGRRLSSILRQLAADRSRERISIGDLFQTMGDRAISALMLI
CCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
FALPNAFPTPPGTSAVLGAPLVFLAVQLTFGLKPWLPRVIADRSMRREDFETIVGRIHRW
HHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
LAWAERMLKPRLAIFAEPPAEYIAGAACLLLSIVLLLPVPLGNMLPAITISVFAFGILGR
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC
DGLFALIGFIMTAVSLVVAGGVIYGLVKAAIYLVMQWFA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1748284; 11481430 [H]