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The map label for this gene is lsrR [H]

Identifier: 209551027

GI number: 209551027

Start: 3566843

End: 3567793

Strand: Reverse

Name: lsrR [H]

Synonym: Rleg2_3451

Alternate gene names: 209551027

Gene position: 3567793-3566843 (Counterclockwise)

Preceding gene: 209551028

Following gene: 209551026

Centisome position: 78.62

GC content: 64.25

Gene sequence:

>951_bases
ATGGCAAAAAGATCCGAGACCGCGGCACGCCTCGACGATGCGGCACGTGCCGGCTGGCTCTATTACGTCGCCGGGCGCAC
GCAGGATGAAATCGCCGCCACGATGGGCATCTCGCGGCAATCGGCACAGCGGCTGGTATCGTTGGCGGTTGCCGAGCGTC
TGATCAAGGTGCGGCTCGATCATCCGATCGCCGCCTGCCTGGAACTCGCCAGCCAGCTGCGGCGGAAATTCGGGCTGAAA
CATGTGGAGGTGGTGCCGAGCGATTCCGGATCGTCGGCGACCGTCGGTATTGCCGAGGCGGCCGCGGCCGAGATCGAACG
ATGGCTGAAACGGGCCGAGCCGATCGTGCTTGCCGTCGGTACCGGCCGTACGCTGAAGGCGGCCGTCGACCAACTGCCGG
CGATCGAATGTCCCAATCACCGCATCGTCTCGCTGACCGGCAATATCGCCCCGGACGGATCGGCCGCCTATTACAATGTC
ATCTTCAGCATGGCCGATGCGGTGAAGGCGCGGCACTATCCGATGCCGCTGCCGGTGCTCGTCACCTCGGCGGAAGAGCG
GGAGCTGCTGCATGGCCAGCAGCTGGTGCGCTCGACGCTCGATATGAGCGCGCAGGCCGACGTCACCTTCGTCGGCATCG
GCGAACTCGGCATTGACGGGCCGCTATGCGTCGACGGTTTCCTCGAGAAGGACGAGATGATGGAGCTGATGCGCGGGGGT
GCGGTCGGCGAGATCTGCGGCTGGATTTTCGACGTCGACGGCAGGTTGCTCGACAACCCGATCAACGAACGGGTCGCGTC
GGCGCCGATCCCGTCCCGGGACGCATCGATGGTCATCGGTCTGGCCAAGGGCAAGCGCAAGTTCAAGGCGATCCGGGCCG
CCGTTGTCGGGCAGCAAATCAATGGGCTGATTACCGACGAAGAGACGGCTGAGTTTTTGCTCAGGAATTGA

Upstream 100 bases:

>100_bases
GGCTCGACATTTGCCGGAATTTTGTTTTGATCTGGCGCGGTACAGTTTCAAATCATGTTCGGCGGCGGTACGCCGGCTCA
CTTTGCGTGGTAGGCATTCA

Downstream 100 bases:

>100_bases
GCAAAAAATACTTATTTTAAATCAATTGGATAGCTAGTTCCTTCGGCACCGCAGCAACGATTGCCGATTGACATTCTTTA
TCGTTTATTGAGTAATTGCC

Product: DeoR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 316; Mature: 315

Protein sequence:

>316_residues
MAKRSETAARLDDAARAGWLYYVAGRTQDEIAATMGISRQSAQRLVSLAVAERLIKVRLDHPIAACLELASQLRRKFGLK
HVEVVPSDSGSSATVGIAEAAAAEIERWLKRAEPIVLAVGTGRTLKAAVDQLPAIECPNHRIVSLTGNIAPDGSAAYYNV
IFSMADAVKARHYPMPLPVLVTSAEERELLHGQQLVRSTLDMSAQADVTFVGIGELGIDGPLCVDGFLEKDEMMELMRGG
AVGEICGWIFDVDGRLLDNPINERVASAPIPSRDASMVIGLAKGKRKFKAIRAAVVGQQINGLITDEETAEFLLRN

Sequences:

>Translated_316_residues
MAKRSETAARLDDAARAGWLYYVAGRTQDEIAATMGISRQSAQRLVSLAVAERLIKVRLDHPIAACLELASQLRRKFGLK
HVEVVPSDSGSSATVGIAEAAAAEIERWLKRAEPIVLAVGTGRTLKAAVDQLPAIECPNHRIVSLTGNIAPDGSAAYYNV
IFSMADAVKARHYPMPLPVLVTSAEERELLHGQQLVRSTLDMSAQADVTFVGIGELGIDGPLCVDGFLEKDEMMELMRGG
AVGEICGWIFDVDGRLLDNPINERVASAPIPSRDASMVIGLAKGKRKFKAIRAAVVGQQINGLITDEETAEFLLRN
>Mature_315_residues
AKRSETAARLDDAARAGWLYYVAGRTQDEIAATMGISRQSAQRLVSLAVAERLIKVRLDHPIAACLELASQLRRKFGLKH
VEVVPSDSGSSATVGIAEAAAAEIERWLKRAEPIVLAVGTGRTLKAAVDQLPAIECPNHRIVSLTGNIAPDGSAAYYNVI
FSMADAVKARHYPMPLPVLVTSAEERELLHGQQLVRSTLDMSAQADVTFVGIGELGIDGPLCVDGFLEKDEMMELMRGGA
VGEICGWIFDVDGRLLDNPINERVASAPIPSRDASMVIGLAKGKRKFKAIRAAVVGQQINGLITDEETAEFLLRN

Specific function: Regulates transcription of many different genes. In the absence of autoinducer 2 (AI-2), represses transcription of the lsr operon and its own transcription. In the presence of AI-2, lsrR is inactivated by binding phospho-AI-2, leading to the transcriptio

COG id: COG2390

COG function: function code K; Transcriptional regulator, contains sigma factor-related N-terminal domain

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sorC transcriptional regulatory family [H]

Homologues:

Organism=Escherichia coli, GI1787791, Length=312, Percent_Identity=31.4102564102564, Blast_Score=135, Evalue=3e-33,
Organism=Escherichia coli, GI87082414, Length=322, Percent_Identity=27.9503105590062, Blast_Score=125, Evalue=4e-30,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04198 Sugar-bind [H]

EC number: NA

Molecular weight: Translated: 34040; Mature: 33908

Theoretical pI: Translated: 6.06; Mature: 6.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKRSETAARLDDAARAGWLYYVAGRTQDEIAATMGISRQSAQRLVSLAVAERLIKVRLD
CCCCHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCC
HPIAACLELASQLRRKFGLKHVEVVPSDSGSSATVGIAEAAAAEIERWLKRAEPIVLAVG
CHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCEEHHHHHHHHHHHHHHHHCCCEEEEEC
TGRTLKAAVDQLPAIECPNHRIVSLTGNIAPDGSAAYYNVIFSMADAVKARHYPMPLPVL
CCCHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEE
VTSAEERELLHGQQLVRSTLDMSAQADVTFVGIGELGIDGPLCVDGFLEKDEMMELMRGG
EECCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCHHHHHCCHHHHHHHHHCC
AVGEICGWIFDVDGRLLDNPINERVASAPIPSRDASMVIGLAKGKRKFKAIRAAVVGQQI
CHHHHHHHHHCCCCCHHCCCHHHHHHCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHH
NGLITDEETAEFLLRN
CCCCCCHHHHHHHHCC
>Mature Secondary Structure 
AKRSETAARLDDAARAGWLYYVAGRTQDEIAATMGISRQSAQRLVSLAVAERLIKVRLD
CCCHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCC
HPIAACLELASQLRRKFGLKHVEVVPSDSGSSATVGIAEAAAAEIERWLKRAEPIVLAVG
CHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCEEHHHHHHHHHHHHHHHHCCCEEEEEC
TGRTLKAAVDQLPAIECPNHRIVSLTGNIAPDGSAAYYNVIFSMADAVKARHYPMPLPVL
CCCHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEE
VTSAEERELLHGQQLVRSTLDMSAQADVTFVGIGELGIDGPLCVDGFLEKDEMMELMRGG
EECCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCHHHHHCCHHHHHHHHHCC
AVGEICGWIFDVDGRLLDNPINERVASAPIPSRDASMVIGLAKGKRKFKAIRAAVVGQQI
CHHHHHHHHHCCCCCHHCCCHHHHHHCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHH
NGLITDEETAEFLLRN
CCCCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA