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The map label for this gene is ydcV [H]

Identifier: 209551002

GI number: 209551002

Start: 3543403

End: 3544215

Strand: Direct

Name: ydcV [H]

Synonym: Rleg2_3426

Alternate gene names: 209551002

Gene position: 3543403-3544215 (Clockwise)

Preceding gene: 209551001

Following gene: 209551003

Centisome position: 78.08

GC content: 64.33

Gene sequence:

>813_bases
ATGCGCTCTGATCTCAAGACATCGCCGCTGCCGTTGAAGATCGCCGCCGCCGGCGGGCTGCTCTTCCTGCACCTGCCGAT
CCTGCTGATCTTCGTCTATGCCTTCACCACCGAGGAGAAGAGCTATCAATGGCCGCCGCCCGGACTGACGCTGCAGTGGT
TCGCTGTCGCCTGGAACCGGCCGGACGTCTGGTCGGCGCTTGGCCTTTCCGTGCAGGTCGCCGTCATCGCCACGGCGATC
GCGCTGATCCTCGGCACACTCTGCGCGGCGGCCGTCAGCCAGACGAAGTTCTTCGGCCGCGAGGCGATCTCGCTGCTCGT
CATCCTGCCGATCGCGCTTCCCGGCATCATTACCGGCATTGCGCTGCGCTCCGCCTTCAGCCTGTTCGACATCCCCTTTT
CGGTCTGGACCATCGTGCTCGGCCACGCCACCTTCTGCGTGGTCGTCGTCTACAACAACGCGGTCGCCCGCTTCCGCCGC
ACCTCCGGCTCGCTGATCGAAGCGTCGATGGATCTCGGCGCCGACGGCTTCCAGACCTTCCGTCATATCATCCTGCCGAA
TATCGGCACCGCTCTTCTCGCCGGCGGCATGCTGGCTTTCGCATTGTCCTTCGACGAGGTCATCGTCACCACCTTCACCG
GTGGCCAGCAATCGACCCTGCCGATCTGGATGCTCGAAGAACTGATCCGCCCGCGCCAGCGGCCCGTCACCAATGTGGTC
GCCATGCTCGTGGTGCTCGTCACCTTTCTGCCGATCCTGGCAGCCTATTACCTCACCCGCGACGGCGACCAGATTGCCGG
CGCCGGCAAATAA

Upstream 100 bases:

>100_bases
GGAACGGCCGGAAACGTGCCGCTCGCCGCCGCCTTCTCCGTCGTGCCGATCGTCATCATGGCGCTTTACCTGTCACTTGC
CAAAAAACTGGGAGCCTTCG

Downstream 100 bases:

>100_bases
CAGGGAGAACATCATGGATACGCAGATGCTGATCGGTTCCCGCTTCGAAAACGGCACGGAGACGGAAGAGCACATCCTGA
ACCCGAAGACCGGCGAGACG

Product: binding-protein-dependent transporters inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 270; Mature: 270

Protein sequence:

>270_residues
MRSDLKTSPLPLKIAAAGGLLFLHLPILLIFVYAFTTEEKSYQWPPPGLTLQWFAVAWNRPDVWSALGLSVQVAVIATAI
ALILGTLCAAAVSQTKFFGREAISLLVILPIALPGIITGIALRSAFSLFDIPFSVWTIVLGHATFCVVVVYNNAVARFRR
TSGSLIEASMDLGADGFQTFRHIILPNIGTALLAGGMLAFALSFDEVIVTTFTGGQQSTLPIWMLEELIRPRQRPVTNVV
AMLVVLVTFLPILAAYYLTRDGDQIAGAGK

Sequences:

>Translated_270_residues
MRSDLKTSPLPLKIAAAGGLLFLHLPILLIFVYAFTTEEKSYQWPPPGLTLQWFAVAWNRPDVWSALGLSVQVAVIATAI
ALILGTLCAAAVSQTKFFGREAISLLVILPIALPGIITGIALRSAFSLFDIPFSVWTIVLGHATFCVVVVYNNAVARFRR
TSGSLIEASMDLGADGFQTFRHIILPNIGTALLAGGMLAFALSFDEVIVTTFTGGQQSTLPIWMLEELIRPRQRPVTNVV
AMLVVLVTFLPILAAYYLTRDGDQIAGAGK
>Mature_270_residues
MRSDLKTSPLPLKIAAAGGLLFLHLPILLIFVYAFTTEEKSYQWPPPGLTLQWFAVAWNRPDVWSALGLSVQVAVIATAI
ALILGTLCAAAVSQTKFFGREAISLLVILPIALPGIITGIALRSAFSLFDIPFSVWTIVLGHATFCVVVVYNNAVARFRR
TSGSLIEASMDLGADGFQTFRHIILPNIGTALLAGGMLAFALSFDEVIVTTFTGGQQSTLPIWMLEELIRPRQRPVTNVV
AMLVVLVTFLPILAAYYLTRDGDQIAGAGK

Specific function: Probably part of the binding-protein-dependent transport system ydcSTUV; probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787714, Length=259, Percent_Identity=63.3204633204633, Blast_Score=286, Evalue=8e-79,
Organism=Escherichia coli, GI1787368, Length=234, Percent_Identity=28.2051282051282, Blast_Score=107, Evalue=9e-25,
Organism=Escherichia coli, GI1787081, Length=255, Percent_Identity=30.5882352941176, Blast_Score=96, Evalue=4e-21,
Organism=Escherichia coli, GI1787080, Length=219, Percent_Identity=29.6803652968037, Blast_Score=72, Evalue=3e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 29174; Mature: 29174

Theoretical pI: Translated: 8.70; Mature: 8.70

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRSDLKTSPLPLKIAAAGGLLFLHLPILLIFVYAFTTEEKSYQWPPPGLTLQWFAVAWNR
CCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEECCC
PDVWSALGLSVQVAVIATAIALILGTLCAAAVSQTKFFGREAISLLVILPIALPGIITGI
CCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALRSAFSLFDIPFSVWTIVLGHATFCVVVVYNNAVARFRRTSGSLIEASMDLGADGFQTF
HHHHHHHHHHCHHHHHHHHHHHHHEEEEEEECCHHHHHHHCCCCCEEHHHHCCCHHHHHH
RHIILPNIGTALLAGGMLAFALSFDEVIVTTFTGGQQSTLPIWMLEELIRPRQRPVTNVV
HHHHCCCHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCHHHHHHHHHCCCCCCHHHHH
AMLVVLVTFLPILAAYYLTRDGDQIAGAGK
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MRSDLKTSPLPLKIAAAGGLLFLHLPILLIFVYAFTTEEKSYQWPPPGLTLQWFAVAWNR
CCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEECCC
PDVWSALGLSVQVAVIATAIALILGTLCAAAVSQTKFFGREAISLLVILPIALPGIITGI
CCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALRSAFSLFDIPFSVWTIVLGHATFCVVVVYNNAVARFRRTSGSLIEASMDLGADGFQTF
HHHHHHHHHHCHHHHHHHHHHHHHEEEEEEECCHHHHHHHCCCCCEEHHHHCCCHHHHHH
RHIILPNIGTALLAGGMLAFALSFDEVIVTTFTGGQQSTLPIWMLEELIRPRQRPVTNVV
HHHHCCCHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCHHHHHHHHHCCCCCCHHHHH
AMLVVLVTFLPILAAYYLTRDGDQIAGAGK
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]