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The map label for this gene is ydcU [H]

Identifier: 209551001

GI number: 209551001

Start: 3542451

End: 3543413

Strand: Direct

Name: ydcU [H]

Synonym: Rleg2_3425

Alternate gene names: 209551001

Gene position: 3542451-3543413 (Clockwise)

Preceding gene: 209551000

Following gene: 209551002

Centisome position: 78.06

GC content: 60.02

Gene sequence:

>963_bases
ATGACGGCACTCACCATCTCCAACGCCAAGACATCGATCCTTCCCGGACGCAGCGGTTTCTTCGGCCGGATGTCGGATGC
CTTCTGGCGGCACCCGAAGCTCTTACTCTTCCTGATGCTGACGCCGCCGCTGCTTTGGCTCGGCATCATCTATATCGGTT
CGCTGATCGCCCTGCTGCTGCAGAGCTTCTTCTCCATCGACGATTTTTCCGGCCTGGTGAATTACGAATTCACCCTTGCG
ACCTATGCCCAGCTTCTGAGCCCGACGAATTTCGACATCATCATCCGCACAGTCGTGATGGCGGCGCTGGTCACCATCGC
TTCCGCATTGATCGCCTTCCCGATCGCCTACTACGCGGCGCGTTATGCCCAAGGCAAATGGAAGGTGCTCTTTTATCTCG
GCGTCATGCTGCCGCTCTGGTCGAGCTATCTCGTCAAGATCTACGCCTGGAAACTGATCCTCGCCAAGGAAGGCATCCTC
ACCTGGATCTTCGAGAGGCTGCATCTCTCCTGGCTGCTCGACGGCATCCTCAATCTGCCGGTCGTCGGCGGCAATTCGCT
CTCGGTGAGCTACCTCGGCACCTTCATCGTCTTCGTCTACATCTGGCTTCCCTATATGATCCTGCCGACGCAGGCGGCCC
TCGAACGCGTGCCAGGCAACTTGATCGAGGCCTCGGCCGATCTCGGCGCCACGCCGCGCCAGACCTTCCGCACCGTGCTG
CTGCCCTTGGCGCTCCCCGGCATCGTCGCCGGTTCGATCTTCACCTTCTCGCTGACATTGGGCGATTACATCATCCCGCA
GATCATCGGCTCGTCCAGGCTCTTCATCGGCCAGGCCGTCTATGCCCAGCAGGGAACGGCCGGAAACGTGCCGCTCGCCG
CCGCCTTCTCCGTCGTGCCGATCGTCATCATGGCGCTTTACCTGTCACTTGCCAAAAAACTGGGAGCCTTCGATGCGCTC
TGA

Upstream 100 bases:

>100_bases
TGCATGTGATGCTGCCGGCAGGCGCGCCTGTGCCTGATGTCGGCGCCGGCATCCGCCTCGCCTGGCAGCCTGCCGATATC
CACTACATGGACGACGCGGC

Downstream 100 bases:

>100_bases
TCTCAAGACATCGCCGCTGCCGTTGAAGATCGCCGCCGCCGGCGGGCTGCTCTTCCTGCACCTGCCGATCCTGCTGATCT
TCGTCTATGCCTTCACCACC

Product: binding-protein-dependent transporters inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 320; Mature: 319

Protein sequence:

>320_residues
MTALTISNAKTSILPGRSGFFGRMSDAFWRHPKLLLFLMLTPPLLWLGIIYIGSLIALLLQSFFSIDDFSGLVNYEFTLA
TYAQLLSPTNFDIIIRTVVMAALVTIASALIAFPIAYYAARYAQGKWKVLFYLGVMLPLWSSYLVKIYAWKLILAKEGIL
TWIFERLHLSWLLDGILNLPVVGGNSLSVSYLGTFIVFVYIWLPYMILPTQAALERVPGNLIEASADLGATPRQTFRTVL
LPLALPGIVAGSIFTFSLTLGDYIIPQIIGSSRLFIGQAVYAQQGTAGNVPLAAAFSVVPIVIMALYLSLAKKLGAFDAL

Sequences:

>Translated_320_residues
MTALTISNAKTSILPGRSGFFGRMSDAFWRHPKLLLFLMLTPPLLWLGIIYIGSLIALLLQSFFSIDDFSGLVNYEFTLA
TYAQLLSPTNFDIIIRTVVMAALVTIASALIAFPIAYYAARYAQGKWKVLFYLGVMLPLWSSYLVKIYAWKLILAKEGIL
TWIFERLHLSWLLDGILNLPVVGGNSLSVSYLGTFIVFVYIWLPYMILPTQAALERVPGNLIEASADLGATPRQTFRTVL
LPLALPGIVAGSIFTFSLTLGDYIIPQIIGSSRLFIGQAVYAQQGTAGNVPLAAAFSVVPIVIMALYLSLAKKLGAFDAL
>Mature_319_residues
TALTISNAKTSILPGRSGFFGRMSDAFWRHPKLLLFLMLTPPLLWLGIIYIGSLIALLLQSFFSIDDFSGLVNYEFTLAT
YAQLLSPTNFDIIIRTVVMAALVTIASALIAFPIAYYAARYAQGKWKVLFYLGVMLPLWSSYLVKIYAWKLILAKEGILT
WIFERLHLSWLLDGILNLPVVGGNSLSVSYLGTFIVFVYIWLPYMILPTQAALERVPGNLIEASADLGATPRQTFRTVLL
PLALPGIVAGSIFTFSLTLGDYIIPQIIGSSRLFIGQAVYAQQGTAGNVPLAAAFSVVPIVIMALYLSLAKKLGAFDAL

Specific function: Probably part of the binding-protein-dependent transport system ydcSTUV; probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787713, Length=306, Percent_Identity=60.4575163398693, Blast_Score=357, Evalue=1e-100,
Organism=Escherichia coli, GI1787369, Length=248, Percent_Identity=30.6451612903226, Blast_Score=123, Evalue=2e-29,
Organism=Escherichia coli, GI1787080, Length=232, Percent_Identity=32.3275862068966, Blast_Score=118, Evalue=4e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 35129; Mature: 34998

Theoretical pI: Translated: 9.71; Mature: 9.71

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTALTISNAKTSILPGRSGFFGRMSDAFWRHPKLLLFLMLTPPLLWLGIIYIGSLIALLL
CCEEEECCCCCEECCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QSFFSIDDFSGLVNYEFTLATYAQLLSPTNFDIIIRTVVMAALVTIASALIAFPIAYYAA
HHHHCCCCCCCHHCEEHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RYAQGKWKVLFYLGVMLPLWSSYLVKIYAWKLILAKEGILTWIFERLHLSWLLDGILNLP
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
VVGGNSLSVSYLGTFIVFVYIWLPYMILPTQAALERVPGNLIEASADLGATPRQTFRTVL
EECCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCHHHHCCCCCCCCHHHHHHHHH
LPLALPGIVAGSIFTFSLTLGDYIIPQIIGSSRLFIGQAVYAQQGTAGNVPLAAAFSVVP
HHHHHHHHHHHHHHEEEHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHH
IVIMALYLSLAKKLGAFDAL
HHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
TALTISNAKTSILPGRSGFFGRMSDAFWRHPKLLLFLMLTPPLLWLGIIYIGSLIALLL
CEEEECCCCCEECCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH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HHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]