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The map label for this gene is xylA [H]

Identifier: 209550987

GI number: 209550987

Start: 3525004

End: 3526314

Strand: Reverse

Name: xylA [H]

Synonym: Rleg2_3411

Alternate gene names: 209550987

Gene position: 3526314-3525004 (Counterclockwise)

Preceding gene: 209550988

Following gene: 209550985

Centisome position: 77.71

GC content: 59.88

Gene sequence:

>1311_bases
ATGAGCACCGGATTTTTCGGCGATATCCAAAAAGTGAAATACGAAGGCCCTGACAGCACCAATCCGCTGGCCTTCCGTTA
CTACCAGCCGGACGAGATCGTCATGGGCAAGCGCATGGAAGACCATCTGCGCTTTGCGGTGGCCTATTGGCACACCTTCA
CCTGGCCGGGCGGCGATCCCTTCGGCGGCCAGACCTTCCTGCGTCCCTGGTTCGAGGACACGATGAAGGCCGCCAAGCTC
AAGGCTGACGTCGCCTTCGAATTCTTCTCGCTGCTTGGCTCGCCCTACTACTGCTTCCATGATGCCGACGTGCGTCCGGA
GGGCAAAAATTTCGCTGAGAACACCAAAAACCTCAACGAGATCGTCGACTACTTCGCCGAGAAGCAGGCTTCCACCGGCA
CCAAGCTGCTCTGGGGCACGGCGAACCTCTTTTCCAACCGCCGTTACATGTCGGGTGCTGCGACCAATCCGGATCCCGAT
GTCTTCGCTTTCGCAGCCGCGACCGTGAAGACCTGCATCGACGCGACGCAGAAGCTCGGCGGTGAGAACTATGTGCTCTG
GGGCGGCCGCGAAGGTTACGAGACGCTGCTCAATACCGATCTCAAGCGGGAGCTCGACCAGCTCGGGCGCTTCCTCAACC
TCGTCGTCGAATACAAGCACAAGATCGGCTACACCGGCACGATCCTGATCGAGCCGAAGCCGCAGGAGCCGACCAAGCAC
CAGTATGATTACGACGTTGCGACCGTCTACGGCTTCCTCAAGAAGCACGGCCTCGAAAACGAAGTGAAGCTCAATATCGA
GCAGGGCCACGCGATCCTGGCCGGTCACTCCTTCGAGCACGAACTGGCGCTTGCCAATGCGCTTGGCATCTTCGGCTCGA
TCGATATGAACCGCAACGACTACCAGTCCGGCTGGGATACCGACCAGTTCCCGAACAATGTTCCCGAAATGGCGCTCGCC
TATTATCACGTTCTGGCAGGCGGCGGCTTCAAGACCGGCGGCACCAACTTCGACTCGAAGCTTCGCCGCCAGTCGCTCGA
CCCGGCGGATCTGCTGATCGGCCATATCGGCGGCATGGATTGCTGCGCCCGCGGCCTGAAGGCCGCTGCCAGAATGATCG
AGGACAAGGCTCTGTCACAGCCGCTCGCCGATCGTTATGCCGGCTGGGAATCCGCCGAGGCGCAGAAGCTCTTCCGCGGC
GAATATTCGCTGGACGAGATTACGAACTGGGTCGAGACCAAGGACGTCAACCCGCAGCCGAGATCCGGCAAGCAGGAACT
GCTCGAAAACGTCGTCAACCGTTACGTCTGA

Upstream 100 bases:

>100_bases
TCCCACTCGGGGAGAAGGTGCCGGCAGGCGGATGAGGGGGCCTCTGGCGTAGACCATCAATTCAGAACTTCGAAAAAATA
CGAACCCAAGGAGACCCAAT

Downstream 100 bases:

>100_bases
TCAAGCGTGCTGGCGGCCATTGGCCGCCGGCGCAATTTTTTGTCGCCGGCTATCCCTCTGTTCAGCGCTTCAACCAGTTG
CGCGATGGTGCGGAGACGGA

Product: xylose isomerase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 436; Mature: 435

Protein sequence:

>436_residues
MSTGFFGDIQKVKYEGPDSTNPLAFRYYQPDEIVMGKRMEDHLRFAVAYWHTFTWPGGDPFGGQTFLRPWFEDTMKAAKL
KADVAFEFFSLLGSPYYCFHDADVRPEGKNFAENTKNLNEIVDYFAEKQASTGTKLLWGTANLFSNRRYMSGAATNPDPD
VFAFAAATVKTCIDATQKLGGENYVLWGGREGYETLLNTDLKRELDQLGRFLNLVVEYKHKIGYTGTILIEPKPQEPTKH
QYDYDVATVYGFLKKHGLENEVKLNIEQGHAILAGHSFEHELALANALGIFGSIDMNRNDYQSGWDTDQFPNNVPEMALA
YYHVLAGGGFKTGGTNFDSKLRRQSLDPADLLIGHIGGMDCCARGLKAAARMIEDKALSQPLADRYAGWESAEAQKLFRG
EYSLDEITNWVETKDVNPQPRSGKQELLENVVNRYV

Sequences:

>Translated_436_residues
MSTGFFGDIQKVKYEGPDSTNPLAFRYYQPDEIVMGKRMEDHLRFAVAYWHTFTWPGGDPFGGQTFLRPWFEDTMKAAKL
KADVAFEFFSLLGSPYYCFHDADVRPEGKNFAENTKNLNEIVDYFAEKQASTGTKLLWGTANLFSNRRYMSGAATNPDPD
VFAFAAATVKTCIDATQKLGGENYVLWGGREGYETLLNTDLKRELDQLGRFLNLVVEYKHKIGYTGTILIEPKPQEPTKH
QYDYDVATVYGFLKKHGLENEVKLNIEQGHAILAGHSFEHELALANALGIFGSIDMNRNDYQSGWDTDQFPNNVPEMALA
YYHVLAGGGFKTGGTNFDSKLRRQSLDPADLLIGHIGGMDCCARGLKAAARMIEDKALSQPLADRYAGWESAEAQKLFRG
EYSLDEITNWVETKDVNPQPRSGKQELLENVVNRYV
>Mature_435_residues
STGFFGDIQKVKYEGPDSTNPLAFRYYQPDEIVMGKRMEDHLRFAVAYWHTFTWPGGDPFGGQTFLRPWFEDTMKAAKLK
ADVAFEFFSLLGSPYYCFHDADVRPEGKNFAENTKNLNEIVDYFAEKQASTGTKLLWGTANLFSNRRYMSGAATNPDPDV
FAFAAATVKTCIDATQKLGGENYVLWGGREGYETLLNTDLKRELDQLGRFLNLVVEYKHKIGYTGTILIEPKPQEPTKHQ
YDYDVATVYGFLKKHGLENEVKLNIEQGHAILAGHSFEHELALANALGIFGSIDMNRNDYQSGWDTDQFPNNVPEMALAY
YHVLAGGGFKTGGTNFDSKLRRQSLDPADLLIGHIGGMDCCARGLKAAARMIEDKALSQPLADRYAGWESAEAQKLFRGE
YSLDEITNWVETKDVNPQPRSGKQELLENVVNRYV

Specific function: Unknown

COG id: COG2115

COG function: function code G; Xylose isomerase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the xylose isomerase family [H]

Homologues:

Organism=Escherichia coli, GI1789988, Length=435, Percent_Identity=61.3793103448276, Blast_Score=568, Evalue=1e-163,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013022
- InterPro:   IPR012307
- InterPro:   IPR013452
- InterPro:   IPR001998 [H]

Pfam domain/function: PF01261 AP_endonuc_2 [H]

EC number: =5.3.1.5 [H]

Molecular weight: Translated: 49085; Mature: 48953

Theoretical pI: Translated: 5.33; Mature: 5.33

Prosite motif: PS00172 XYLOSE_ISOMERASE_1 ; PS00173 XYLOSE_ISOMERASE_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTGFFGDIQKVKYEGPDSTNPLAFRYYQPDEIVMGKRMEDHLRFAVAYWHTFTWPGGDP
CCCCCCCCHHHEEECCCCCCCCEEEEEECCCHHHHCCCHHHHHHHHHHHHEEEECCCCCC
FGGQTFLRPWFEDTMKAAKLKADVAFEFFSLLGSPYYCFHDADVRPEGKNFAENTKNLNE
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHH
IVDYFAEKQASTGTKLLWGTANLFSNRRYMSGAATNPDPDVFAFAAATVKTCIDATQKLG
HHHHHHHHHCCCCCEEEEECHHHHCCCCEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCC
GENYVLWGGREGYETLLNTDLKRELDQLGRFLNLVVEYKHKIGYTGTILIEPKPQEPTKH
CCCEEEECCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCC
QYDYDVATVYGFLKKHGLENEVKLNIEQGHAILAGHSFEHELALANALGIFGSIDMNRND
CCCCHHHHHHHHHHHCCCCCEEEEEEECCCEEEECCCCHHHHHHHHHHHHHEEECCCCCC
YQSGWDTDQFPNNVPEMALAYYHVLAGGGFKTGGTNFDSKLRRQSLDPADLLIGHIGGMD
CCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHHHHHHCCCHH
CCARGLKAAARMIEDKALSQPLADRYAGWESAEAQKLFRGEYSLDEITNWVETKDVNPQP
HHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHHCCCCCCC
RSGKQELLENVVNRYV
CCCHHHHHHHHHHHCC
>Mature Secondary Structure 
STGFFGDIQKVKYEGPDSTNPLAFRYYQPDEIVMGKRMEDHLRFAVAYWHTFTWPGGDP
CCCCCCCHHHEEECCCCCCCCEEEEEECCCHHHHCCCHHHHHHHHHHHHEEEECCCCCC
FGGQTFLRPWFEDTMKAAKLKADVAFEFFSLLGSPYYCFHDADVRPEGKNFAENTKNLNE
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHH
IVDYFAEKQASTGTKLLWGTANLFSNRRYMSGAATNPDPDVFAFAAATVKTCIDATQKLG
HHHHHHHHHCCCCCEEEEECHHHHCCCCEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCC
GENYVLWGGREGYETLLNTDLKRELDQLGRFLNLVVEYKHKIGYTGTILIEPKPQEPTKH
CCCEEEECCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCC
QYDYDVATVYGFLKKHGLENEVKLNIEQGHAILAGHSFEHELALANALGIFGSIDMNRND
CCCCHHHHHHHHHHHCCCCCEEEEEEECCCEEEECCCCHHHHHHHHHHHHHEEECCCCCC
YQSGWDTDQFPNNVPEMALAYYHVLAGGGFKTGGTNFDSKLRRQSLDPADLLIGHIGGMD
CCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHHHHHHCCCHH
CCARGLKAAARMIEDKALSQPLADRYAGWESAEAQKLFRGEYSLDEITNWVETKDVNPQP
HHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHHCCCCCCC
RSGKQELLENVVNRYV
CCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA