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The map label for this gene is hspD [H]

Identifier: 209550897

GI number: 209550897

Start: 3419721

End: 3420191

Strand: Reverse

Name: hspD [H]

Synonym: Rleg2_3321

Alternate gene names: 209550897

Gene position: 3420191-3419721 (Counterclockwise)

Preceding gene: 209550899

Following gene: 209550895

Centisome position: 75.37

GC content: 60.51

Gene sequence:

>471_bases
ATGCGTCACGTAGACTTCTCTCCGCTTTATCGCTCGACCGTCGGTTTCGACCGGCTCTTCACCATGCTCGACAGCCTTGC
CCAGCCGGAGCAGGCCCAGACCTATCCGCCCTATAATATCGAGCGCACCGGTGAAAACACCTATCGGATCACCATGGCGG
TTGCCGGTTTCGACGAGACCGAACTTTCGATCGAAGCGCACGCCCATGTGCTGTCCGTGAAGGGTGAAAAGGCCGAGGAA
CCTGCCGAGAGCGGCGAATTCCTCTACCGCGGCATTGCCAAGCGCGCCTTCGAGCGCCGCTTCCAGCTTGCCGATCATGT
CGAGGTGACCGCCGCTTCGCTGAAGAACGGCCTGCTGCATATCGACCTTCTGCGCAACATTCCCGAGGCCATGAAGCCCC
GTAAGATTGCGATTGCCGCAGAGCCGGTCGAGGCTCCGAAGGCCATCGAGGCGCAGGTCATCAACGGCTAA

Upstream 100 bases:

>100_bases
TGCGGGTGCCGAAGAGGGCCCGCGCAACCGTCCCGAGGCCGCCAAAGATGGGGTTTCAGGGGCATTTTATCGCAACACGT
CGCTTCCACAGGAGGACATC

Downstream 100 bases:

>100_bases
TCACATCGCTTAAGAAAAAAAACGGCGCTCCGATCGGGGCGCCGTTTTTTATTGCGGCAATGGGTTCAGGCCGGGCTGGC
GGCTTCATCTATTTCCTTTT

Product: heat shock protein Hsp20

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 156; Mature: 156

Protein sequence:

>156_residues
MRHVDFSPLYRSTVGFDRLFTMLDSLAQPEQAQTYPPYNIERTGENTYRITMAVAGFDETELSIEAHAHVLSVKGEKAEE
PAESGEFLYRGIAKRAFERRFQLADHVEVTAASLKNGLLHIDLLRNIPEAMKPRKIAIAAEPVEAPKAIEAQVING

Sequences:

>Translated_156_residues
MRHVDFSPLYRSTVGFDRLFTMLDSLAQPEQAQTYPPYNIERTGENTYRITMAVAGFDETELSIEAHAHVLSVKGEKAEE
PAESGEFLYRGIAKRAFERRFQLADHVEVTAASLKNGLLHIDLLRNIPEAMKPRKIAIAAEPVEAPKAIEAQVING
>Mature_156_residues
MRHVDFSPLYRSTVGFDRLFTMLDSLAQPEQAQTYPPYNIERTGENTYRITMAVAGFDETELSIEAHAHVLSVKGEKAEE
PAESGEFLYRGIAKRAFERRFQLADHVEVTAASLKNGLLHIDLLRNIPEAMKPRKIAIAAEPVEAPKAIEAQVING

Specific function: Unknown

COG id: COG0071

COG function: function code O; Molecular chaperone (small heat shock protein)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the small heat shock protein (HSP20) family [H]

Homologues:

Organism=Escherichia coli, GI1790122, Length=138, Percent_Identity=56.5217391304348, Blast_Score=152, Evalue=1e-38,
Organism=Escherichia coli, GI87082316, Length=142, Percent_Identity=44.3661971830986, Blast_Score=130, Evalue=3e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002068
- InterPro:   IPR008978 [H]

Pfam domain/function: PF00011 HSP20 [H]

EC number: NA

Molecular weight: Translated: 17452; Mature: 17452

Theoretical pI: Translated: 5.64; Mature: 5.64

Prosite motif: PS01031 HSP20

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRHVDFSPLYRSTVGFDRLFTMLDSLAQPEQAQTYPPYNIERTGENTYRITMAVAGFDET
CCCCCCCHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCEECCCCEEEEEEEEECCCCC
ELSIEAHAHVLSVKGEKAEEPAESGEFLYRGIAKRAFERRFQLADHVEVTAASLKNGLLH
CEEEEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEE
IDLLRNIPEAMKPRKIAIAAEPVEAPKAIEAQVING
EHHHHCCHHHHCCCEEEEEECCCCCCCCCCEEECCC
>Mature Secondary Structure
MRHVDFSPLYRSTVGFDRLFTMLDSLAQPEQAQTYPPYNIERTGENTYRITMAVAGFDET
CCCCCCCHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCEECCCCEEEEEEEEECCCCC
ELSIEAHAHVLSVKGEKAEEPAESGEFLYRGIAKRAFERRFQLADHVEVTAASLKNGLLH
CEEEEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEE
IDLLRNIPEAMKPRKIAIAAEPVEAPKAIEAQVING
EHHHHCCHHHHCCCEEEEEECCCCCCCCCCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12597275 [H]