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The map label for this gene is hdfR [H]

Identifier: 209550885

GI number: 209550885

Start: 3398626

End: 3399477

Strand: Reverse

Name: hdfR [H]

Synonym: Rleg2_3309

Alternate gene names: 209550885

Gene position: 3399477-3398626 (Counterclockwise)

Preceding gene: 209550889

Following gene: 209550883

Centisome position: 74.91

GC content: 59.04

Gene sequence:

>852_bases
ATGCAGATTGATCTTATCGAGACTTTTCTCGACCTGATGGAAACCCGCAGCTTCAACCGCACGGCGGAGCGGTTGAACGT
CACGCAATCAACCGTTTCCCATCGCGTTAAGGCGCTGGAGGCGCAGTTCAACCGAAAGCTCTTCACCCGCAACAAGGGTG
GCACCGCACCGACGGCGTCGGGCCTGCGTTTCCTAGATCATGCGAAAGCCCTTCAATATCAGTGGAATGAGGCAACGCGG
GCGGTCGAGAATGCGGGCGCCTATGAGCGATCCGTGCGGCTCGGCATCCAACACGACCTTGCCGAAATCTTTGCCGGGCG
CTGGCTTTCTGCGGTCCGCGCCGAGCTGCCTGGGACATCGATCTACGTGGAAGCGGACTACTCGAACCAGATGAACCGAG
ACCTTGCCGCTGGAGATCTCGATCTGGCCGTTCTCTATACTCCGCACTACCTGCCCGACCTTTACTATGAAAGAATCGGG
GAAATGACATATAATCTGGTCAGCACCGTCGCCTGCACCGTCGGCGCACTTCGACCCGAAACCTATATCCAGGCCATCTA
TTCTCCGGCCTTCGACCGTGCCCACCGACTGGCTTTGCCGCATCTGTCGGCAGCACCGCTGGCGTCGGGGCAAAACATCG
CCATCAGGGAATTGCTGATGACGCTGGGGGGCGCTGCCTACCTCATGAAAAGCAGTGCTGCGCGACTTATCAAGGAAGGT
GCCGCTTTCCCGGTAGAGGACGCTCCACCCATTCAACAGACGGTCTATGCCGCAACCAGCCTCCGCACACGTCACGCCCC
TCAGCACCGCCGCATCATCGGCATCCTGCAGGATCTGATAGCATCAGCCTGA

Upstream 100 bases:

>100_bases
CGAACGGGAGCGGCATCAAGCGGAGGGAACTTGCTTTATTGATCGAAGAATTCGATTAGATAATGCCAGATCACCCTCGA
CCAGTGAGCCTGGAAAGAAC

Downstream 100 bases:

>100_bases
GCGGATGGCAGGGCGACAAGCTTTAGCGTTTGAGCTTGAGGCCGACGCCGGCGCGCCATTGCTGCGAATCGGTGCCTTCC
TTGCGCGCGGTCAGCTCGTA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: H-NS-dependent flhDC regulator [H]

Number of amino acids: Translated: 283; Mature: 283

Protein sequence:

>283_residues
MQIDLIETFLDLMETRSFNRTAERLNVTQSTVSHRVKALEAQFNRKLFTRNKGGTAPTASGLRFLDHAKALQYQWNEATR
AVENAGAYERSVRLGIQHDLAEIFAGRWLSAVRAELPGTSIYVEADYSNQMNRDLAAGDLDLAVLYTPHYLPDLYYERIG
EMTYNLVSTVACTVGALRPETYIQAIYSPAFDRAHRLALPHLSAAPLASGQNIAIRELLMTLGGAAYLMKSSAARLIKEG
AAFPVEDAPPIQQTVYAATSLRTRHAPQHRRIIGILQDLIASA

Sequences:

>Translated_283_residues
MQIDLIETFLDLMETRSFNRTAERLNVTQSTVSHRVKALEAQFNRKLFTRNKGGTAPTASGLRFLDHAKALQYQWNEATR
AVENAGAYERSVRLGIQHDLAEIFAGRWLSAVRAELPGTSIYVEADYSNQMNRDLAAGDLDLAVLYTPHYLPDLYYERIG
EMTYNLVSTVACTVGALRPETYIQAIYSPAFDRAHRLALPHLSAAPLASGQNIAIRELLMTLGGAAYLMKSSAARLIKEG
AAFPVEDAPPIQQTVYAATSLRTRHAPQHRRIIGILQDLIASA
>Mature_283_residues
MQIDLIETFLDLMETRSFNRTAERLNVTQSTVSHRVKALEAQFNRKLFTRNKGGTAPTASGLRFLDHAKALQYQWNEATR
AVENAGAYERSVRLGIQHDLAEIFAGRWLSAVRAELPGTSIYVEADYSNQMNRDLAAGDLDLAVLYTPHYLPDLYYERIG
EMTYNLVSTVACTVGALRPETYIQAIYSPAFDRAHRLALPHLSAAPLASGQNIAIRELLMTLGGAAYLMKSSAARLIKEG
AAFPVEDAPPIQQTVYAATSLRTRHAPQHRRIIGILQDLIASA

Specific function: Negatively regulates the transcription of the flagellar master operon flhDC by binding to the upstream region of the operon [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI48994962, Length=263, Percent_Identity=26.9961977186312, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1788297, Length=148, Percent_Identity=32.4324324324324, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1789173, Length=147, Percent_Identity=31.9727891156463, Blast_Score=61, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020890
- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 31375; Mature: 31375

Theoretical pI: Translated: 8.40; Mature: 8.40

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQIDLIETFLDLMETRSFNRTAERLNVTQSTVSHRVKALEAQFNRKLFTRNKGGTAPTAS
CCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHH
GLRFLDHAKALQYQWNEATRAVENAGAYERSVRLGIQHDLAEIFAGRWLSAVRAELPGTS
HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCE
IYVEADYSNQMNRDLAAGDLDLAVLYTPHYLPDLYYERIGEMTYNLVSTVACTVGALRPE
EEEEECCCCHHCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
TYIQAIYSPAFDRAHRLALPHLSAAPLASGQNIAIRELLMTLGGAAYLMKSSAARLIKEG
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHCC
AAFPVEDAPPIQQTVYAATSLRTRHAPQHRRIIGILQDLIASA
CCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MQIDLIETFLDLMETRSFNRTAERLNVTQSTVSHRVKALEAQFNRKLFTRNKGGTAPTAS
CCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHH
GLRFLDHAKALQYQWNEATRAVENAGAYERSVRLGIQHDLAEIFAGRWLSAVRAELPGTS
HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCE
IYVEADYSNQMNRDLAAGDLDLAVLYTPHYLPDLYYERIGEMTYNLVSTVACTVGALRPE
EEEEECCCCHHCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
TYIQAIYSPAFDRAHRLALPHLSAAPLASGQNIAIRELLMTLGGAAYLMKSSAARLIKEG
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHCC
AAFPVEDAPPIQQTVYAATSLRTRHAPQHRRIIGILQDLIASA
CCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA