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The map label for this gene is pecT [H]

Identifier: 209550860

GI number: 209550860

Start: 3373364

End: 3374260

Strand: Reverse

Name: pecT [H]

Synonym: Rleg2_3284

Alternate gene names: 209550860

Gene position: 3374260-3373364 (Counterclockwise)

Preceding gene: 209550864

Following gene: 209550859

Centisome position: 74.36

GC content: 67.78

Gene sequence:

>897_bases
ATGCGACGGACGATCTTCGATCTCGATGTGCTTCGAAGCTTTTCGACCGGCATGGAGCTCGGCAATTTCGCCAAGGCGGC
CGAAAAACTCGGGCGTTCCACCTCGGCAGTGAGCGCACAGCTGAAGAAGCTGGAGGAACAGGCGGGCACGCCGATCTTCC
GCAAGGCCGGACGCGGGCTGACGCTCACCGATGCCGGCGAGACGATGCTCGGTTATGCCAGGCGGTTGCTGGAATTGAAT
GACGAGGCGGCGGCGGCCGTGCACAGCATCGAGCTTGAAGGCTGGGTGCGGCTCGGCCTGCAGGAGGATTTTGGCGAGAC
CCTGCTGCCGGAGGTGCTCGGACGCTTTGCACGCGCGCATCCGAAGGTCCGCGTCGAGGCGCGGGTGGTGCGCAATGTCG
AACTGCTTGAGCGCGTCACCTCAGGCAAGCTTGATCTGGCGCTCGCCTGGAGCGACGGCACGGCGACGGCGCATTGTGAG
CGCATCGGCGAGGTGCCGATGCGCTGGATCGGGCCTGCCGAGAGATCGCCCGGCTGGCATGCGGCAAGTGGCGAGCCGAT
ACCGCTCGCCTCGCTGGAGGCGCCATGCCTGATGCGCAGTGCGGCGACCCGGGCACTTGACGAGGCCGGCATTTCCTGGC
GTCTCGCCTTCGTCAGCTCCAGCCTTGGCGGTCTCTGGGCAGCGGCGGCCGCAGGCCTCGGCATCACTATCCGCACACCG
ATCGGATTGCCGGCAAAGGTCCGGCCGCTGGCGCCGGAGACGATCGGCTTGCCTGATTTGCCGAAGCTCGGGCTGGTCCT
GCATCGGGCCGAAGCCGAACCGCAGCCGGCGGCGGCCCGGCTTGCCGAGCTCGTCCTGCAGTCGGTGCATGGCGCGCTTC
GCGGGACGGCGGCCTGA

Upstream 100 bases:

>100_bases
CGGGCCGTCGTCGGCCTTGACAACAGCACCATCGCACGCCACGATGATGCCGAAAAGCAGAATTTTATGAACCGATGGTC
CTGAAAAATGGGATTATGTG

Downstream 100 bases:

>100_bases
CATTGCCGCATTGACCCTTGGATCGCGTGGCTATAGCTTCGGACTGCTATGAAGACGATCACTCTCAATATCGCTACGGC
CTTCTTCTTGAGCCTTTAAA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: Pectinase gene transcriptional regulator [H]

Number of amino acids: Translated: 298; Mature: 298

Protein sequence:

>298_residues
MRRTIFDLDVLRSFSTGMELGNFAKAAEKLGRSTSAVSAQLKKLEEQAGTPIFRKAGRGLTLTDAGETMLGYARRLLELN
DEAAAAVHSIELEGWVRLGLQEDFGETLLPEVLGRFARAHPKVRVEARVVRNVELLERVTSGKLDLALAWSDGTATAHCE
RIGEVPMRWIGPAERSPGWHAASGEPIPLASLEAPCLMRSAATRALDEAGISWRLAFVSSSLGGLWAAAAAGLGITIRTP
IGLPAKVRPLAPETIGLPDLPKLGLVLHRAEAEPQPAAARLAELVLQSVHGALRGTAA

Sequences:

>Translated_298_residues
MRRTIFDLDVLRSFSTGMELGNFAKAAEKLGRSTSAVSAQLKKLEEQAGTPIFRKAGRGLTLTDAGETMLGYARRLLELN
DEAAAAVHSIELEGWVRLGLQEDFGETLLPEVLGRFARAHPKVRVEARVVRNVELLERVTSGKLDLALAWSDGTATAHCE
RIGEVPMRWIGPAERSPGWHAASGEPIPLASLEAPCLMRSAATRALDEAGISWRLAFVSSSLGGLWAAAAAGLGITIRTP
IGLPAKVRPLAPETIGLPDLPKLGLVLHRAEAEPQPAAARLAELVLQSVHGALRGTAA
>Mature_298_residues
MRRTIFDLDVLRSFSTGMELGNFAKAAEKLGRSTSAVSAQLKKLEEQAGTPIFRKAGRGLTLTDAGETMLGYARRLLELN
DEAAAAVHSIELEGWVRLGLQEDFGETLLPEVLGRFARAHPKVRVEARVVRNVELLERVTSGKLDLALAWSDGTATAHCE
RIGEVPMRWIGPAERSPGWHAASGEPIPLASLEAPCLMRSAATRALDEAGISWRLAFVSSSLGGLWAAAAAGLGITIRTP
IGLPAKVRPLAPETIGLPDLPKLGLVLHRAEAEPQPAAARLAELVLQSVHGALRGTAA

Specific function: Regulates pectinase gene expression [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788626, Length=262, Percent_Identity=35.8778625954198, Blast_Score=152, Evalue=4e-38,
Organism=Escherichia coli, GI1787806, Length=143, Percent_Identity=31.4685314685315, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1787601, Length=143, Percent_Identity=30.0699300699301, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI157672245, Length=159, Percent_Identity=26.4150943396226, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1790399, Length=280, Percent_Identity=26.4285714285714, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1790208, Length=149, Percent_Identity=29.5302013422819, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI48994962, Length=147, Percent_Identity=29.2517006802721, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1786713, Length=73, Percent_Identity=43.8356164383562, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1788748, Length=248, Percent_Identity=24.5967741935484, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 31774; Mature: 31774

Theoretical pI: Translated: 8.27; Mature: 8.27

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRTIFDLDVLRSFSTGMELGNFAKAAEKLGRSTSAVSAQLKKLEEQAGTPIFRKAGRGL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHCCCCC
TLTDAGETMLGYARRLLELNDEAAAAVHSIELEGWVRLGLQEDFGETLLPEVLGRFARAH
EEECCCHHHHHHHHHHHHCCCHHHHHHHHEEHHHHHEECCHHHHHHHHHHHHHHHHHHCC
PKVRVEARVVRNVELLERVTSGKLDLALAWSDGTATAHCERIGEVPMRWIGPAERSPGWH
CCEEEHHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHCCCHHHCCCCCCCCCCC
AASGEPIPLASLEAPCLMRSAATRALDEAGISWRLAFVSSSLGGLWAAAAAGLGITIRTP
CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEHHHHCCHHHHHHHHHCCCCEEEECC
IGLPAKVRPLAPETIGLPDLPKLGLVLHRAEAEPQPAAARLAELVLQSVHGALRGTAA
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MRRTIFDLDVLRSFSTGMELGNFAKAAEKLGRSTSAVSAQLKKLEEQAGTPIFRKAGRGL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHCCCCC
TLTDAGETMLGYARRLLELNDEAAAAVHSIELEGWVRLGLQEDFGETLLPEVLGRFARAH
EEECCCHHHHHHHHHHHHCCCHHHHHHHHEEHHHHHEECCHHHHHHHHHHHHHHHHHHCC
PKVRVEARVVRNVELLERVTSGKLDLALAWSDGTATAHCERIGEVPMRWIGPAERSPGWH
CCEEEHHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHCCCHHHCCCCCCCCCCC
AASGEPIPLASLEAPCLMRSAATRALDEAGISWRLAFVSSSLGGLWAAAAAGLGITIRTP
CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEHHHHCCHHHHHHHHHCCCCEEEECC
IGLPAKVRPLAPETIGLPDLPKLGLVLHRAEAEPQPAAARLAELVLQSVHGALRGTAA
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8626286 [H]