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The map label for this gene is exbD [H]

Identifier: 209550779

GI number: 209550779

Start: 3292438

End: 3292893

Strand: Reverse

Name: exbD [H]

Synonym: Rleg2_3203

Alternate gene names: 209550779

Gene position: 3292893-3292438 (Counterclockwise)

Preceding gene: 209550780

Following gene: 209550778

Centisome position: 72.56

GC content: 62.72

Gene sequence:

>456_bases
ATGGGTATGGCTGTTGGAGGCAATGGCGGCGGGGGCGGCGGACGCCGCCGTCGCGGCGGTCGGAACAGGGCCGTGATTTC
TGAAATCAACGTGACGCCGCTCGTCGACGTCATGCTCGTGCTTTTGATCATCTTCATGGTCGCGGCACCGATGATGACCG
TCGGCGTGCCGATCGACCTGCCGGAAACGCAGGCCAAGGCGCTGAATTCCGAGACGCAGCCGATCACCATCTCCGTCAAG
AACGACGGCGAAGTATTCCTGCAGGAAACGCCGATCCCGGCCGCCGAGATCGCCGCCAAACTCGAGGCGATCGCCACCAC
CGGCTATAACGAACGGATCTTCGTGCGCGGCGACGCGACAGCGCCTTACGGCGTCATCGCCGACGTCATGGCCCGTATTC
AGGGCGCAGGCTTCAAGAATATCGGCCTCGTGACGCAGCAGAAGAAGGACCAATAG

Upstream 100 bases:

>100_bases
GGAAGGTTTCGCGGATGAATTCTCCGCCATACTTTCGCGCCAGATCGACGAGAAGCTGCAGCCGCGCGCTGCAGCTCAGT
AACCAGCGGAGTATACTGAC

Downstream 100 bases:

>100_bases
CGTTCAATATGAAGACCAGCGTCGTCACATCTGCTGTTCTGCATTGCCTGGTGCTCACCTGGGCGATGGTGTCGCTTAGC
GCGCCCGAATCCTTCAAGGT

Product: protein TolR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 151; Mature: 150

Protein sequence:

>151_residues
MGMAVGGNGGGGGGRRRRGGRNRAVISEINVTPLVDVMLVLLIIFMVAAPMMTVGVPIDLPETQAKALNSETQPITISVK
NDGEVFLQETPIPAAEIAAKLEAIATTGYNERIFVRGDATAPYGVIADVMARIQGAGFKNIGLVTQQKKDQ

Sequences:

>Translated_151_residues
MGMAVGGNGGGGGGRRRRGGRNRAVISEINVTPLVDVMLVLLIIFMVAAPMMTVGVPIDLPETQAKALNSETQPITISVK
NDGEVFLQETPIPAAEIAAKLEAIATTGYNERIFVRGDATAPYGVIADVMARIQGAGFKNIGLVTQQKKDQ
>Mature_150_residues
GMAVGGNGGGGGGRRRRGGRNRAVISEINVTPLVDVMLVLLIIFMVAAPMMTVGVPIDLPETQAKALNSETQPITISVKN
DGEVFLQETPIPAAEIAAKLEAIATTGYNERIFVRGDATAPYGVIADVMARIQGAGFKNIGLVTQQKKDQ

Specific function: Involved in the tonB-dependent energy-dependent transport of various receptor-bound substrates [H]

COG id: COG0848

COG function: function code U; Biopolymer transport protein

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the exbD/tolR family [H]

Homologues:

Organism=Escherichia coli, GI1789380, Length=122, Percent_Identity=39.344262295082, Blast_Score=92, Evalue=1e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003400
- InterPro:   IPR014170 [H]

Pfam domain/function: PF02472 ExbD [H]

EC number: NA

Molecular weight: Translated: 15877; Mature: 15746

Theoretical pI: Translated: 9.04; Mature: 9.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGMAVGGNGGGGGGRRRRGGRNRAVISEINVTPLVDVMLVLLIIFMVAAPMMTVGVPIDL
CCEECCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC
PETQAKALNSETQPITISVKNDGEVFLQETPIPAAEIAAKLEAIATTGYNERIFVRGDAT
CCHHHHHCCCCCCEEEEEECCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEECCC
APYGVIADVMARIQGAGFKNIGLVTQQKKDQ
CCHHHHHHHHHHHCCCCCCCCCEECCCCCCC
>Mature Secondary Structure 
GMAVGGNGGGGGGRRRRGGRNRAVISEINVTPLVDVMLVLLIIFMVAAPMMTVGVPIDL
CEECCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC
PETQAKALNSETQPITISVKNDGEVFLQETPIPAAEIAAKLEAIATTGYNERIFVRGDAT
CCHHHHHCCCCCCEEEEEECCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEECCC
APYGVIADVMARIQGAGFKNIGLVTQQKKDQ
CCHHHHHHHHHHHCCCCCCCCCEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8437515 [H]