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The map label for this gene is rhaS [C]

Identifier: 209550757

GI number: 209550757

Start: 3267379

End: 3268269

Strand: Reverse

Name: rhaS [C]

Synonym: Rleg2_3181

Alternate gene names: 209550757

Gene position: 3268269-3267379 (Counterclockwise)

Preceding gene: 209550765

Following gene: 209550754

Centisome position: 72.02

GC content: 59.48

Gene sequence:

>891_bases
ATGAGCAGCCACATACCGACCTACGAGCTCTACGGCGAAAACATCGGACGATCGCCGGAGTTTTGGTTGCACTGCGAAAC
AATTCGCTCCCGCAGCAGCTTGCATCAATGGGAAATCCGCCTGCACCGCCACGACAGTTTCTTTCAGATATTGTACATCG
AAAGCGGCTCGGGTGATGCGATCTTCGGCGAAAAGAGCCATACCATCCGCCCGCCGGCAATCATCACCGTGCCGCCCGGG
CTCAACCACGGCTTTCGCTTTTCGCGCGACATCGACGGCCTCGTCATCACGCTGTTGAGATCGCATCTCAGCCACCCGCT
CGGCGACCGAAGCCAGATCGGCGAATGGCTGGCGACGCCGCATCTGACGCCGCTCGATCCCGATAATGCCGAGGCTGCCT
ATGTCATGCAGACGTTGCGCCGGCTGGGCAACGAGTTCGAAAATCGCCGCAGCGGCCGCAACGAAACGCTGGGGGCTTAC
GTTGCCCTGGCGCTGCGACTGAGGGCGAGGATTTCGCATGAGGGAGATAGTTACGAGCTTGCGTCGAATGAGAATGAGCG
GCGCATGGAGATGCTGAACGAGCTTCTTCAACAGCATTTCCGATCGCACAAGCCCGCTTCCTTCTACGCCAGCGAGCTTG
GAATTTCGCCGACGCATCTCACGCGGATCGTCCGGTCGATGACCGGCAGAACGCCGCACGAGCTGATCGCCGGCAAACTC
ATCGAGGAGGCGAAACGCCAGCTCGTTTTTACGCTTGGCAGCGTTCAGGAGATCTCCTTCCGGCTCGGCTTTGCCGACCC
CGCCTATTTCTCGCGCTTCTTTCTCAAATACACGGGAGAAACGCCGCGAGTCTGGCGTGTGAAGGAAAAGGTTCGGCTCG
AGCGCGCATAG

Upstream 100 bases:

>100_bases
TTTTGCGTTTTGTCAGATTCTGCCGCGCCGGCCGGATCGTCACAATGGACATTCCAGCCTAAAAATTGCACTAATCGAAC
ATTGGCGCGGGAGGAAGCTG

Downstream 100 bases:

>100_bases
CTTTCGGGCATTGTTCCCGGGCTCGAATCCGTTATGCCGCCGGCCACGTCCAGCTCTGCACCTCCGGCATGTCCTCGCCA
TACTCCCTGACATAGTCGTG

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator AraC Family; Transcriptional Regulator; Transcriptional Regulator PobR; 4-Hydroxyphenylacetate Catabolism Regulatory Protein HpaA; Helix-Turn-Helix Domain-Containing Protein; Transcriptional Regulatory Protein; Regulator Of 4HPA-Hydroxylase Operon; PobR Regulator; Helix-Turn-Helix- Domain Containing Protein AraC Type; Phosphomethylpyrimidine Kinase; Transcriptional Regulator Arac Family; Transcriptional Regulator Pobr Arac Family Protein; AraC Family Regulatory Protein; AraC-Family Regulatory Protein; Transcription Regulator AraC-Type; AraC-Family Transcriptional Regulator; AraC/XylS Family Transcription Factor; AraC-Type Regulatory Protein; AraC-Type Transcription Regulator; Transcriptional Regulator AraC Family Protein; Helix-Turn-Helix AraC Type; Regulator Of 4hpa-Hydroxylase Operon; Transcriptional Regulator Protein; Transcription Regulator; AraC Family Transcription Regulator Protein

Number of amino acids: Translated: 296; Mature: 295

Protein sequence:

>296_residues
MSSHIPTYELYGENIGRSPEFWLHCETIRSRSSLHQWEIRLHRHDSFFQILYIESGSGDAIFGEKSHTIRPPAIITVPPG
LNHGFRFSRDIDGLVITLLRSHLSHPLGDRSQIGEWLATPHLTPLDPDNAEAAYVMQTLRRLGNEFENRRSGRNETLGAY
VALALRLRARISHEGDSYELASNENERRMEMLNELLQQHFRSHKPASFYASELGISPTHLTRIVRSMTGRTPHELIAGKL
IEEAKRQLVFTLGSVQEISFRLGFADPAYFSRFFLKYTGETPRVWRVKEKVRLERA

Sequences:

>Translated_296_residues
MSSHIPTYELYGENIGRSPEFWLHCETIRSRSSLHQWEIRLHRHDSFFQILYIESGSGDAIFGEKSHTIRPPAIITVPPG
LNHGFRFSRDIDGLVITLLRSHLSHPLGDRSQIGEWLATPHLTPLDPDNAEAAYVMQTLRRLGNEFENRRSGRNETLGAY
VALALRLRARISHEGDSYELASNENERRMEMLNELLQQHFRSHKPASFYASELGISPTHLTRIVRSMTGRTPHELIAGKL
IEEAKRQLVFTLGSVQEISFRLGFADPAYFSRFFLKYTGETPRVWRVKEKVRLERA
>Mature_295_residues
SSHIPTYELYGENIGRSPEFWLHCETIRSRSSLHQWEIRLHRHDSFFQILYIESGSGDAIFGEKSHTIRPPAIITVPPGL
NHGFRFSRDIDGLVITLLRSHLSHPLGDRSQIGEWLATPHLTPLDPDNAEAAYVMQTLRRLGNEFENRRSGRNETLGAYV
ALALRLRARISHEGDSYELASNENERRMEMLNELLQQHFRSHKPASFYASELGISPTHLTRIVRSMTGRTPHELIAGKLI
EEAKRQLVFTLGSVQEISFRLGFADPAYFSRFFLKYTGETPRVWRVKEKVRLERA

Specific function: Positive Activator Of Genes Required For L-Rhamnose Utilization, Probably Of The Rhamnose Transporter Gene (Rhat). [C]

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 34074; Mature: 33943

Theoretical pI: Translated: 9.26; Mature: 9.26

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSHIPTYELYGENIGRSPEFWLHCETIRSRSSLHQWEIRLHRHDSFFQILYIESGSGDA
CCCCCCCHHCCCCCCCCCCCEEEEHHHHHHHHHHHHHHEEEEECCCEEEEEEEECCCCCE
IFGEKSHTIRPPAIITVPPGLNHGFRFSRDIDGLVITLLRSHLSHPLGDRSQIGEWLATP
EECCCCCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHCC
HLTPLDPDNAEAAYVMQTLRRLGNEFENRRSGRNETLGAYVALALRLRARISHEGDSYEL
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCEEE
ASNENERRMEMLNELLQQHFRSHKPASFYASELGISPTHLTRIVRSMTGRTPHELIAGKL
CCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHH
IEEAKRQLVFTLGSVQEISFRLGFADPAYFSRFFLKYTGETPRVWRVKEKVRLERA
HHHHHHHHHHHHCCHHHHHEEECCCCHHHHHHHHHHHCCCCCCEEEHHHHHHCCCC
>Mature Secondary Structure 
SSHIPTYELYGENIGRSPEFWLHCETIRSRSSLHQWEIRLHRHDSFFQILYIESGSGDA
CCCCCCHHCCCCCCCCCCCEEEEHHHHHHHHHHHHHHEEEEECCCEEEEEEEECCCCCE
IFGEKSHTIRPPAIITVPPGLNHGFRFSRDIDGLVITLLRSHLSHPLGDRSQIGEWLATP
EECCCCCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHCC
HLTPLDPDNAEAAYVMQTLRRLGNEFENRRSGRNETLGAYVALALRLRARISHEGDSYEL
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCEEE
ASNENERRMEMLNELLQQHFRSHKPASFYASELGISPTHLTRIVRSMTGRTPHELIAGKL
CCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHH
IEEAKRQLVFTLGSVQEISFRLGFADPAYFSRFFLKYTGETPRVWRVKEKVRLERA
HHHHHHHHHHHHCCHHHHHEEECCCCHHHHHHHHHHHCCCCCCEEEHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA