Click here to switch to the map view.

The map label for this gene is exoT [H]

Identifier: 209550704

GI number: 209550704

Start: 3197756

End: 3199237

Strand: Reverse

Name: exoT [H]

Synonym: Rleg2_3128

Alternate gene names: 209550704

Gene position: 3199237-3197756 (Counterclockwise)

Preceding gene: 209550705

Following gene: 209550703

Centisome position: 70.5

GC content: 60.53

Gene sequence:

>1482_bases
ATGTCAAGCGTATCTCAGAGGACGGCGACGGCGAGCATCTGGACCATCAGCGGAAAATTTCTTGCGCGGATGCTCGATTT
CGTCAGCCTCCTTGTCCTGGCAAGGCTGCTGAGCCCTGAGGATTTCGGCCTGGTCGCCATCGCGACGTCGGTCCTGGTCA
TCGTCGAGGCGATCCTGGACCTGCCGTTGACGCAGGCCTTGATGCGCCAATCGTCGCCTTCGGACGAGATGTTCGCCACG
GCCTTCACCCTCAGCCTGCTGAGAGGGCTGGCCATCAGCCTGCTGATGATGATCATCTCCTGGCCAATGGCGCTGGCCTA
CGACGACCCCAGGCTTTTCGCCCTTGTCGCCGTTCTTTCGATCGCGCCTGCCATGCGCAGCATGATCAGCCCGCGCATGG
TTCTTTTCATGCAGCGGTTCGATTTCAAACGCGAGTTCGCGCTCGATCTCATCACCAAGGGATCGACATTGTTGTTCGGG
GTGGGTGTGGCTGTGTCAACAGGCAGCTACTGGGGGCTGGCGATCGGAGCGGTCGCCGGCCCGACGGCAGCGATGATCAC
GTCCTATGTCTTTGCGCCGATGCGGCCGACGTTCAGCCTTTCCGAATGGAAGCATTTTCAGGACATGATCAGCTGGAATA
CCGTGTCGCAGGTGCTGAATTCGATCAATTGGCAGCTGGACCGGCTGCTTCTGCCGCGGTTTACCGGATTGTCGACGTTC
GGTGCCTTCAGCGTCGCCGACAATATCGCGGGTATTCCGTACCAGACCTTCGTCGGACCGTTGCTGCGCCCGCTGATGGC
GGCATTCTCCACCGTCGAAGACCGCCGCAACCTGGTTGCTGCCTATCTAAAGGCGACGAATGCGATCACCTTCGTCGCGG
CACCCATTCTGATCGCTCTTGCCCTTCTCGCCGAGCCGACCGTGCGTATCCTCGTCGGCGAGAAATGGGCATCCTCCGCG
CCGATCCTGCAATGGCTGTGCCTTGTCAGCCTGCTTGGTCTTCCCACGAACATGATGCCGCCATTGGCCATGGTCATGAA
CAATACCCGCTATGTCGCTCTCAGGATGTTTATCGAGTTCGCCGTCAGGGCGCCGGTCACCATTCTGGCTATCGCCTATT
TCCAGGTGTCGGGCGCGCTGGGCGCGCGGATCGTGGCGGTCCTCGTCGCCTATGGCGCATCGCTCGTCATCACCAGGCGG
CTGATCGGCGCGAGTTTTGCCGCGCAATTGATGTCGTTTTTCCGGCCTCTGCTTGCGAGCTTGCCGATGATCGCTTTCCT
GCTCTGGGTGGAGCCGATGCTCGTCGCCATGCCTGTCGGCGTCAATCTTATCCTCGGCCTCGCGCTTTTCGGCGGGGCGG
CAGCGGGGATTTTCTGGGCTGTCGCGTTGCTGTTGTGGCAGATGATCGGAAGGCCCGACGGCATCGAGACCATCATCGTC
CAAAGGCTCATCCCGCGACGAAACGAGGTTCTCACCTCATGA

Upstream 100 bases:

>100_bases
GAAGACGGCACGGTTGAGGGGGAAGGAGCGGAGCTGCCTGCCTTACCGCCCCCCGCCCGAAACCGTCTCAAGCCCTCGAC
GAGGAATAGATAAACAGATC

Downstream 100 bases:

>100_bases
TCGGGGCAAATGCCCCCGACGATTTTGTTCAAGCGTTTTCAAGGGAGTAACAATGCGTTACGGGATATCTGCCAAGTGGC
TCGGTCTGCTCGTCGTTCTC

Product: polysaccharide biosynthesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 493; Mature: 492

Protein sequence:

>493_residues
MSSVSQRTATASIWTISGKFLARMLDFVSLLVLARLLSPEDFGLVAIATSVLVIVEAILDLPLTQALMRQSSPSDEMFAT
AFTLSLLRGLAISLLMMIISWPMALAYDDPRLFALVAVLSIAPAMRSMISPRMVLFMQRFDFKREFALDLITKGSTLLFG
VGVAVSTGSYWGLAIGAVAGPTAAMITSYVFAPMRPTFSLSEWKHFQDMISWNTVSQVLNSINWQLDRLLLPRFTGLSTF
GAFSVADNIAGIPYQTFVGPLLRPLMAAFSTVEDRRNLVAAYLKATNAITFVAAPILIALALLAEPTVRILVGEKWASSA
PILQWLCLVSLLGLPTNMMPPLAMVMNNTRYVALRMFIEFAVRAPVTILAIAYFQVSGALGARIVAVLVAYGASLVITRR
LIGASFAAQLMSFFRPLLASLPMIAFLLWVEPMLVAMPVGVNLILGLALFGGAAAGIFWAVALLLWQMIGRPDGIETIIV
QRLIPRRNEVLTS

Sequences:

>Translated_493_residues
MSSVSQRTATASIWTISGKFLARMLDFVSLLVLARLLSPEDFGLVAIATSVLVIVEAILDLPLTQALMRQSSPSDEMFAT
AFTLSLLRGLAISLLMMIISWPMALAYDDPRLFALVAVLSIAPAMRSMISPRMVLFMQRFDFKREFALDLITKGSTLLFG
VGVAVSTGSYWGLAIGAVAGPTAAMITSYVFAPMRPTFSLSEWKHFQDMISWNTVSQVLNSINWQLDRLLLPRFTGLSTF
GAFSVADNIAGIPYQTFVGPLLRPLMAAFSTVEDRRNLVAAYLKATNAITFVAAPILIALALLAEPTVRILVGEKWASSA
PILQWLCLVSLLGLPTNMMPPLAMVMNNTRYVALRMFIEFAVRAPVTILAIAYFQVSGALGARIVAVLVAYGASLVITRR
LIGASFAAQLMSFFRPLLASLPMIAFLLWVEPMLVAMPVGVNLILGLALFGGAAAGIFWAVALLLWQMIGRPDGIETIIV
QRLIPRRNEVLTS
>Mature_492_residues
SSVSQRTATASIWTISGKFLARMLDFVSLLVLARLLSPEDFGLVAIATSVLVIVEAILDLPLTQALMRQSSPSDEMFATA
FTLSLLRGLAISLLMMIISWPMALAYDDPRLFALVAVLSIAPAMRSMISPRMVLFMQRFDFKREFALDLITKGSTLLFGV
GVAVSTGSYWGLAIGAVAGPTAAMITSYVFAPMRPTFSLSEWKHFQDMISWNTVSQVLNSINWQLDRLLLPRFTGLSTFG
AFSVADNIAGIPYQTFVGPLLRPLMAAFSTVEDRRNLVAAYLKATNAITFVAAPILIALALLAEPTVRILVGEKWASSAP
ILQWLCLVSLLGLPTNMMPPLAMVMNNTRYVALRMFIEFAVRAPVTILAIAYFQVSGALGARIVAVLVAYGASLVITRRL
IGASFAAQLMSFFRPLLASLPMIAFLLWVEPMLVAMPVGVNLILGLALFGGAAAGIFWAVALLLWQMIGRPDGIETIIVQ
RLIPRRNEVLTS

Specific function: Lipopolysaccharide biosynthesis. [C]

COG id: COG2244

COG function: function code R; Membrane protein involved in the export of O-antigen and teichoic acid

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide synthase family [H]

Homologues:

Organism=Escherichia coli, GI1788359, Length=481, Percent_Identity=23.4927234927235, Blast_Score=107, Evalue=2e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002797 [H]

Pfam domain/function: PF01943 Polysacc_synt [H]

EC number: NA

Molecular weight: Translated: 53645; Mature: 53514

Theoretical pI: Translated: 10.37; Mature: 10.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
5.1 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
4.9 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSVSQRTATASIWTISGKFLARMLDFVSLLVLARLLSPEDFGLVAIATSVLVIVEAILD
CCCCHHHHHHHEEEEECHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHC
LPLTQALMRQSSPSDEMFATAFTLSLLRGLAISLLMMIISWPMALAYDDPRLFALVAVLS
CHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCCHHHHHHHHHHH
IAPAMRSMISPRMVLFMQRFDFKREFALDLITKGSTLLFGVGVAVSTGSYWGLAIGAVAG
HHHHHHHHHCHHHHHHHHHHCHHHHHHHHHHHCCCEEEEECCHHEECCCHHHHHHHHHCC
PTAAMITSYVFAPMRPTFSLSEWKHFQDMISWNTVSQVLNSINWQLDRLLLPRFTGLSTF
HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
GAFSVADNIAGIPYQTFVGPLLRPLMAAFSTVEDRRNLVAAYLKATNAITFVAAPILIAL
HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALLAEPTVRILVGEKWASSAPILQWLCLVSLLGLPTNMMPPLAMVMNNTRYVALRMFIEF
HHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHCCCHHHHHHHHHHH
AVRAPVTILAIAYFQVSGALGARIVAVLVAYGASLVITRRLIGASFAAQLMSFFRPLLAS
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LPMIAFLLWVEPMLVAMPVGVNLILGLALFGGAAAGIFWAVALLLWQMIGRPDGIETIIV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
QRLIPRRNEVLTS
HHHCCCCHHHCCC
>Mature Secondary Structure 
SSVSQRTATASIWTISGKFLARMLDFVSLLVLARLLSPEDFGLVAIATSVLVIVEAILD
CCCHHHHHHHEEEEECHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHC
LPLTQALMRQSSPSDEMFATAFTLSLLRGLAISLLMMIISWPMALAYDDPRLFALVAVLS
CHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCCHHHHHHHHHHH
IAPAMRSMISPRMVLFMQRFDFKREFALDLITKGSTLLFGVGVAVSTGSYWGLAIGAVAG
HHHHHHHHHCHHHHHHHHHHCHHHHHHHHHHHCCCEEEEECCHHEECCCHHHHHHHHHCC
PTAAMITSYVFAPMRPTFSLSEWKHFQDMISWNTVSQVLNSINWQLDRLLLPRFTGLSTF
HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
GAFSVADNIAGIPYQTFVGPLLRPLMAAFSTVEDRRNLVAAYLKATNAITFVAAPILIAL
HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALLAEPTVRILVGEKWASSAPILQWLCLVSLLGLPTNMMPPLAMVMNNTRYVALRMFIEF
HHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHCCCHHHHHHHHHHH
AVRAPVTILAIAYFQVSGALGARIVAVLVAYGASLVITRRLIGASFAAQLMSFFRPLLAS
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LPMIAFLLWVEPMLVAMPVGVNLILGLALFGGAAAGIFWAVALLLWQMIGRPDGIETIIV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
QRLIPRRNEVLTS
HHHCCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8226645; 8226646; 8118055; 11481431 [H]