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The map label for this gene is petR [H]

Identifier: 209550328

GI number: 209550328

Start: 2795060

End: 2795761

Strand: Reverse

Name: petR [H]

Synonym: Rleg2_2748

Alternate gene names: 209550328

Gene position: 2795761-2795060 (Counterclockwise)

Preceding gene: 209550329

Following gene: 209550327

Centisome position: 61.61

GC content: 62.54

Gene sequence:

>702_bases
ATGGCGGTCAGGACAGGTATTTCCGACGATGCGGCGCATCTGCTGGTGGTCGACGACGACTCGCGCATCCGCGCGCTGCT
CAATCGTTATCTCGCCGAGAACGGCTTCCGCGTTACCGTCGCCGCCGACGGCGCCGAGGCGCAGCGCAAGCTCGCGGGTC
TCGATTTCGACCTGATCATCATGGATGTGATGATGCCGGGCGAATCCGGCATCGACGTCACCCGCGGGCTTCGCGCCATT
AAGAATGTTCCGATCATCATGCTGACGGCGTTGGCAGAGTCCGGCAACCGCATCGAGGGCCTCGAGGCCGGCGCCGACGA
CTATCTTTCCAAGCCCTTCGATCCGCGCGAACTTGTGCTGCGCATCAACAACATCCTGCGTCGCAATGCCGGCGGGGAGG
GACCGAAGATCGAACAGGTGATGTTCGGCCCCTACACCTTCTCGCTGACCCGCAAGGAGCTGAAGAAAGCCAGCGAGGTG
ATCCGGCTGACCGACCGCGAGCAGGAGATCATGTTGCTCTTTGCACGGCGTGCCGGCGATACGATCCCCCGCCATGAGCT
GATCGGCAACGACACCGAGGTCGGCGAGCGGACGATCGACGTGCAGATCAACCGGCTGCGGCGTAAGATCGAGGATGATC
CGGCCAATCCCGTCTGGCTACAGACCGTGCGCGGCATCGGATACAGGCTAAGCATCGACTAA

Upstream 100 bases:

>100_bases
GCGCCGCATTGAACGGGCATTCGAAGGGGCTTCTGCGGAGGTGCGGGAGGGCGTAAAAGCTTTCCTTAGAGGCATGCGGG
ACAGACAGAAGGCGGATTGA

Downstream 100 bases:

>100_bases
AGCATGTCGCGCAAAACTGTGCCGCGGTTTTGCGGCAATGACATGCGGAAAACAAAGACCTAAAGCGCAGGGAGCGAAGC
TCAAAGATCGCGACGCGCTT

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 233; Mature: 232

Protein sequence:

>233_residues
MAVRTGISDDAAHLLVVDDDSRIRALLNRYLAENGFRVTVAADGAEAQRKLAGLDFDLIIMDVMMPGESGIDVTRGLRAI
KNVPIIMLTALAESGNRIEGLEAGADDYLSKPFDPRELVLRINNILRRNAGGEGPKIEQVMFGPYTFSLTRKELKKASEV
IRLTDREQEIMLLFARRAGDTIPRHELIGNDTEVGERTIDVQINRLRRKIEDDPANPVWLQTVRGIGYRLSID

Sequences:

>Translated_233_residues
MAVRTGISDDAAHLLVVDDDSRIRALLNRYLAENGFRVTVAADGAEAQRKLAGLDFDLIIMDVMMPGESGIDVTRGLRAI
KNVPIIMLTALAESGNRIEGLEAGADDYLSKPFDPRELVLRINNILRRNAGGEGPKIEQVMFGPYTFSLTRKELKKASEV
IRLTDREQEIMLLFARRAGDTIPRHELIGNDTEVGERTIDVQINRLRRKIEDDPANPVWLQTVRGIGYRLSID
>Mature_232_residues
AVRTGISDDAAHLLVVDDDSRIRALLNRYLAENGFRVTVAADGAEAQRKLAGLDFDLIIMDVMMPGESGIDVTRGLRAIK
NVPIIMLTALAESGNRIEGLEAGADDYLSKPFDPRELVLRINNILRRNAGGEGPKIEQVMFGPYTFSLTRKELKKASEVI
RLTDREQEIMLLFARRAGDTIPRHELIGNDTEVGERTIDVQINRLRRKIEDDPANPVWLQTVRGIGYRLSID

Specific function: Necessary for photosynthetic and respiratory growth. Probable promoter-specific protein mediating the interaction between DNA and RNA polymerase [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1789809, Length=224, Percent_Identity=43.3035714285714, Blast_Score=177, Evalue=7e-46,
Organism=Escherichia coli, GI1786784, Length=225, Percent_Identity=37.3333333333333, Blast_Score=132, Evalue=3e-32,
Organism=Escherichia coli, GI1790863, Length=231, Percent_Identity=35.4978354978355, Blast_Score=131, Evalue=4e-32,
Organism=Escherichia coli, GI2367329, Length=227, Percent_Identity=38.3259911894273, Blast_Score=127, Evalue=8e-31,
Organism=Escherichia coli, GI1786599, Length=229, Percent_Identity=34.9344978165939, Blast_Score=125, Evalue=2e-30,
Organism=Escherichia coli, GI1787229, Length=230, Percent_Identity=35.2173913043478, Blast_Score=124, Evalue=5e-30,
Organism=Escherichia coli, GI87082012, Length=222, Percent_Identity=33.7837837837838, Blast_Score=122, Evalue=2e-29,
Organism=Escherichia coli, GI1788394, Length=231, Percent_Identity=31.6017316017316, Blast_Score=121, Evalue=4e-29,
Organism=Escherichia coli, GI1786911, Length=224, Percent_Identity=33.4821428571429, Blast_Score=112, Evalue=2e-26,
Organism=Escherichia coli, GI1787375, Length=220, Percent_Identity=35.9090909090909, Blast_Score=112, Evalue=2e-26,
Organism=Escherichia coli, GI145693140, Length=228, Percent_Identity=32.4561403508772, Blast_Score=106, Evalue=1e-24,
Organism=Escherichia coli, GI1789402, Length=224, Percent_Identity=31.25, Blast_Score=97, Evalue=6e-22,
Organism=Escherichia coli, GI1790860, Length=222, Percent_Identity=30.1801801801802, Blast_Score=91, Evalue=6e-20,
Organism=Escherichia coli, GI1790552, Length=223, Percent_Identity=30.0448430493274, Blast_Score=91, Evalue=9e-20,
Organism=Escherichia coli, GI1788550, Length=115, Percent_Identity=35.6521739130435, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI1790299, Length=137, Percent_Identity=35.036496350365, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1788191, Length=126, Percent_Identity=34.1269841269841, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1790437, Length=140, Percent_Identity=30, Blast_Score=63, Evalue=1e-11,
Organism=Escherichia coli, GI1789149, Length=144, Percent_Identity=29.1666666666667, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI1788222, Length=171, Percent_Identity=32.1637426900585, Blast_Score=62, Evalue=4e-11,
Organism=Saccharomyces cerevisiae, GI6322000, Length=102, Percent_Identity=35.2941176470588, Blast_Score=65, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001867
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00072 Response_reg; PF00486 Trans_reg_C [H]

EC number: NA

Molecular weight: Translated: 26022; Mature: 25891

Theoretical pI: Translated: 5.23; Mature: 5.23

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAVRTGISDDAAHLLVVDDDSRIRALLNRYLAENGFRVTVAADGAEAQRKLAGLDFDLII
CCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHCCCHHEEE
MDVMMPGESGIDVTRGLRAIKNVPIIMLTALAESGNRIEGLEAGADDYLSKPFDPRELVL
EEEECCCCCCCHHHHHHHHHHCCCEEEEEEECCCCCEECCCCCCCHHHHCCCCCHHHHHH
RINNILRRNAGGEGPKIEQVMFGPYTFSLTRKELKKASEVIRLTDREQEIMLLFARRAGD
HHHHHHHHCCCCCCCCCCEEEECCEEEEHHHHHHHHHHHHHHHCCCCHHHHHHEEHHCCC
TIPRHELIGNDTEVGERTIDVQINRLRRKIEDDPANPVWLQTVRGIGYRLSID
CCCCHHHCCCCCCCCCEEEEEHHHHHHHHHCCCCCCCHHHHHHHCCCEEEECC
>Mature Secondary Structure 
AVRTGISDDAAHLLVVDDDSRIRALLNRYLAENGFRVTVAADGAEAQRKLAGLDFDLII
CCCCCCCCCCEEEEEEECCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHCCCHHEEE
MDVMMPGESGIDVTRGLRAIKNVPIIMLTALAESGNRIEGLEAGADDYLSKPFDPRELVL
EEEECCCCCCCHHHHHHHHHHCCCEEEEEEECCCCCEECCCCCCCHHHHCCCCCHHHHHH
RINNILRRNAGGEGPKIEQVMFGPYTFSLTRKELKKASEVIRLTDREQEIMLLFARRAGD
HHHHHHHHCCCCCCCCCCEEEECCEEEEHHHHHHHHHHHHHHHCCCCHHHHHHEEHHCCC
TIPRHELIGNDTEVGERTIDVQINRLRRKIEDDPANPVWLQTVRGIGYRLSID
CCCCHHHCCCCCCCCCEEEEEHHHHHHHHHCCCCCCCHHHHHHHCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1323023 [H]