| Definition | Rhizobium leguminosarum bv. trifolii WSM2304 chromosome, complete genome. |
|---|---|
| Accession | NC_011369 |
| Length | 4,537,948 |
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The map label for this gene is dnaG [H]
Identifier: 209550283
GI number: 209550283
Start: 2742751
End: 2744751
Strand: Reverse
Name: dnaG [H]
Synonym: Rleg2_2703
Alternate gene names: 209550283
Gene position: 2744751-2742751 (Counterclockwise)
Preceding gene: 209550285
Following gene: 209550282
Centisome position: 60.48
GC content: 63.47
Gene sequence:
>2001_bases ATGCGCTTTTCCAACACTTTTCTCGATGATATTCGCGACCGCGTTCCGATTTCGAACGTGATTGCGCGCCGTGTCAGCTG GGATAAGCGCAAGACCAATGTGTCGCGCGGCGACTACTGGGCCTGCTGCCCGTTCCACGGTGAGAAATCCCCGAGCTTCC ACTGCGAGGACCGGAAGGGCCGCTATCATTGCTTCGGCTGCGGCGTCACCGGCGACCATTTCCGCTTCCTCACCGAGCTG GAGGGCTTAAGCTTTCCCGAGGCGGTGCAGCAGATCGCCGATATGGCCGGCGTTCCGATGCCGCTTGCCGACCCTGTGAT GGAGAAGCGCGAAAAGGAGCGCGGCTCGCTGATCGACGTTATGGAAATGGCGACGCAATTTTTCCAGGATCAGTTGCAGA CGGCGAATGGGGCGAGGGCGCGCGCCTATCTGCGCGACCGCGGGCTGACCGGGCGCACCATCGAGACCTTCCGTCTCGGC TATGCGCCTGACAGCCGCAATGCGCTCAAGGAATATCTCGCCGGCAAGGGCGTCACCAAAGAACAGATCGAGGCCTGCGG CCTGGTCGTTCATGAAAACGTGCCGGTGTCCTACGATCGCTTCCGCGACCGCATCATGTTCCCGATCCTCTCGTCGCGGG AAAAGGTGATCGCCTTCGGCGGCCGCGCCATGTCATCAGATGCGCCGGCGAAATATCTGAACTCCAACGAGACGGAGCTC TTCCACAAGGGCAATGTCCTTTATAATTTCGCCCGCGCGCGCCGCGCCATCCAGGGACCTAGCCGCGGCGATGCCCAGGA CGACAATGCGAGCGGCACCATCATCGCCGTCGAAGGCTATATGGACGTGATCGCGCTCTATCAGGCGGGCATCGAGAATG CCGTCGCGCCGCTCGGCACGGCGCTGACCGAAAACCAGCTCGAGCTGCTCTGGAAGATGGTGCCACAGCCGGTGCTCTGC TTCGACGGCGACGGCGCCGGTATCCGCGCCGCCAACCGTGCCGCCGAATTGGCGCTGCCGCATCTGAAGCCCGGCCGTTC CGTCCGCTTCGCGCTTCTGCCGGATGGCAAGGACCCCGACGATCTCGTGCGCGACGATGGCCGCGCCCCCTTCGACAAGG TGATGAGCCAGGCCAAGCCGCTGTCGGAGATGCTGTGGAGCCGGGAGGTCAATACCGGCAAGTTCGACACGCCCGAGGCG CGCGCCGAACTCGAGGCGCGCCTGAAGCAGCTGGTCGCCGTCATCGCCGACGAGAATGTGCGCCGTCATTACCAGCAGGA TATTCGCGACCGGTTGAACGCCTTCTTCCAGCCGCAGTTTCAGAACCGCAACAATGGCGAGCGCCGCGGTTTCAGCGGCA ATTCCCGCACCGGCCGCGACAATGCTGTTAAGGCAGGGCCGAAAAGCCCCAGCCTCATTTCCGACCGGCTCGCTCGCTCA GGCCCGGTGCGCGGCCACCGGGACAATACGGCGCTGCGCGAAAGCGTGCTGGCGCTTACCATCGTCAATCATCCATCGCT GATGATCGACGATTATGACGAGATCGCCGCGATCGATTATGACAGCCGCGAGTTGAAGCAGCTCTGGTCGGCTGTGCTTG GGGCCGCGGCTGCCGTCGCCGGCCCGCATCTGACGCGCGAATATCTGACCGAGAGGCTGGAATTCGAGGGCTTCGGTCCG CTGATCAAGAGCCTCGACCAGCAGGTGCGCAATGCCAGACTCTGGACGGCGACCGAGGAGGCGGCGATGGAGGATGCGCG TGAGGGGTATCGCCAGGCGCTCGCCTTCCACAAACGGGCAAAGGCGCTGCGCCGGCAGAAAATGGAACTCGAACGCGAGA TTGCGCTGGCGACTGAAGCCGGCGACGGCGAGGCGATCGTTCAGCTGATGCGAGCGCAACAGGAAGTGCATTTCGAAGGT GTCCGGCTTGAGAACCAGGAGGCGATCATCGACGGCTTCGGCGTACTCTCCGGTCGCGTCAAAGGGGCGGCGAACCACTG A
Upstream 100 bases:
>100_bases GAAGACGGCTGCACTTGCCTGTGAATAGCGGGTTTTCATGACAAGTTTCGTGGCATGACGCGGCAAAGCAGCTTATATGG AAGCTGGCCAAGAGGTATAA
Downstream 100 bases:
>100_bases TGCCGCAGACCGAACGGAACGAACCGGGTTTTTCCGCCTCCGACGCGCTGTTTTCCGCCGGCCGCGCGCCGCTCGATATT CTCAAGCAGGTCTATGGCTA
Product: DNA primase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 666; Mature: 666
Protein sequence:
>666_residues MRFSNTFLDDIRDRVPISNVIARRVSWDKRKTNVSRGDYWACCPFHGEKSPSFHCEDRKGRYHCFGCGVTGDHFRFLTEL EGLSFPEAVQQIADMAGVPMPLADPVMEKREKERGSLIDVMEMATQFFQDQLQTANGARARAYLRDRGLTGRTIETFRLG YAPDSRNALKEYLAGKGVTKEQIEACGLVVHENVPVSYDRFRDRIMFPILSSREKVIAFGGRAMSSDAPAKYLNSNETEL FHKGNVLYNFARARRAIQGPSRGDAQDDNASGTIIAVEGYMDVIALYQAGIENAVAPLGTALTENQLELLWKMVPQPVLC FDGDGAGIRAANRAAELALPHLKPGRSVRFALLPDGKDPDDLVRDDGRAPFDKVMSQAKPLSEMLWSREVNTGKFDTPEA RAELEARLKQLVAVIADENVRRHYQQDIRDRLNAFFQPQFQNRNNGERRGFSGNSRTGRDNAVKAGPKSPSLISDRLARS GPVRGHRDNTALRESVLALTIVNHPSLMIDDYDEIAAIDYDSRELKQLWSAVLGAAAAVAGPHLTREYLTERLEFEGFGP LIKSLDQQVRNARLWTATEEAAMEDAREGYRQALAFHKRAKALRRQKMELEREIALATEAGDGEAIVQLMRAQQEVHFEG VRLENQEAIIDGFGVLSGRVKGAANH
Sequences:
>Translated_666_residues MRFSNTFLDDIRDRVPISNVIARRVSWDKRKTNVSRGDYWACCPFHGEKSPSFHCEDRKGRYHCFGCGVTGDHFRFLTEL EGLSFPEAVQQIADMAGVPMPLADPVMEKREKERGSLIDVMEMATQFFQDQLQTANGARARAYLRDRGLTGRTIETFRLG YAPDSRNALKEYLAGKGVTKEQIEACGLVVHENVPVSYDRFRDRIMFPILSSREKVIAFGGRAMSSDAPAKYLNSNETEL FHKGNVLYNFARARRAIQGPSRGDAQDDNASGTIIAVEGYMDVIALYQAGIENAVAPLGTALTENQLELLWKMVPQPVLC FDGDGAGIRAANRAAELALPHLKPGRSVRFALLPDGKDPDDLVRDDGRAPFDKVMSQAKPLSEMLWSREVNTGKFDTPEA RAELEARLKQLVAVIADENVRRHYQQDIRDRLNAFFQPQFQNRNNGERRGFSGNSRTGRDNAVKAGPKSPSLISDRLARS GPVRGHRDNTALRESVLALTIVNHPSLMIDDYDEIAAIDYDSRELKQLWSAVLGAAAAVAGPHLTREYLTERLEFEGFGP LIKSLDQQVRNARLWTATEEAAMEDAREGYRQALAFHKRAKALRRQKMELEREIALATEAGDGEAIVQLMRAQQEVHFEG VRLENQEAIIDGFGVLSGRVKGAANH >Mature_666_residues MRFSNTFLDDIRDRVPISNVIARRVSWDKRKTNVSRGDYWACCPFHGEKSPSFHCEDRKGRYHCFGCGVTGDHFRFLTEL EGLSFPEAVQQIADMAGVPMPLADPVMEKREKERGSLIDVMEMATQFFQDQLQTANGARARAYLRDRGLTGRTIETFRLG YAPDSRNALKEYLAGKGVTKEQIEACGLVVHENVPVSYDRFRDRIMFPILSSREKVIAFGGRAMSSDAPAKYLNSNETEL FHKGNVLYNFARARRAIQGPSRGDAQDDNASGTIIAVEGYMDVIALYQAGIENAVAPLGTALTENQLELLWKMVPQPVLC FDGDGAGIRAANRAAELALPHLKPGRSVRFALLPDGKDPDDLVRDDGRAPFDKVMSQAKPLSEMLWSREVNTGKFDTPEA RAELEARLKQLVAVIADENVRRHYQQDIRDRLNAFFQPQFQNRNNGERRGFSGNSRTGRDNAVKAGPKSPSLISDRLARS GPVRGHRDNTALRESVLALTIVNHPSLMIDDYDEIAAIDYDSRELKQLWSAVLGAAAAVAGPHLTREYLTERLEFEGFGP LIKSLDQQVRNARLWTATEEAAMEDAREGYRQALAFHKRAKALRRQKMELEREIALATEAGDGEAIVQLMRAQQEVHFEG VRLENQEAIIDGFGVLSGRVKGAANH
Specific function: DNA primase is the polymerase that synthesizes small RNA primers for the Okazaki fragments on both template strands at replication forks during chromosomal DNA synthesis [H]
COG id: COG0358
COG function: function code L; DNA primase (bacterial type)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 Toprim domain [H]
Homologues:
Organism=Escherichia coli, GI1789447, Length=443, Percent_Identity=37.9232505643341, Blast_Score=306, Evalue=2e-84,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR016136 - InterPro: IPR013264 - InterPro: IPR019475 - InterPro: IPR006295 - InterPro: IPR013173 - InterPro: IPR006171 - InterPro: IPR002694 [H]
Pfam domain/function: PF10410 DnaB_bind; PF08278 DnaG_DnaB_bind; PF01751 Toprim; PF08275 Toprim_N; PF01807 zf-CHC2 [H]
EC number: 2.7.7.-
Molecular weight: Translated: 74434; Mature: 74434
Theoretical pI: Translated: 7.20; Mature: 7.20
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRFSNTFLDDIRDRVPISNVIARRVSWDKRKTNVSRGDYWACCPFHGEKSPSFHCEDRKG CCCCHHHHHHHHHCCCHHHHHHHHHCCHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCC RYHCFGCGVTGDHFRFLTELEGLSFPEAVQQIADMAGVPMPLADPVMEKREKERGSLIDV CEEEEECCCCCHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCHHHHH MEMATQFFQDQLQTANGARARAYLRDRGLTGRTIETFRLGYAPDSRNALKEYLAGKGVTK HHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCHHEEEECCCCCCHHHHHHHHCCCCCCH EQIEACGLVVHENVPVSYDRFRDRIMFPILSSREKVIAFGGRAMSSDAPAKYLNSNETEL HHHHHCCEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHCCCCCEE FHKGNVLYNFARARRAIQGPSRGDAQDDNASGTIIAVEGYMDVIALYQAGIENAVAPLGT EECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHH ALTENQLELLWKMVPQPVLCFDGDGAGIRAANRAAELALPHLKPGRSVRFALLPDGKDPD HHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCCCCCCCCCEEEEECCCCCCHH DLVRDDGRAPFDKVMSQAKPLSEMLWSREVNTGKFDTPEARAELEARLKQLVAVIADENV HHHHCCCCCCHHHHHHHCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHH RRHYQQDIRDRLNAFFQPQFQNRNNGERRGFSGNSRTGRDNAVKAGPKSPSLISDRLARS HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHC GPVRGHRDNTALRESVLALTIVNHPSLMIDDYDEIAAIDYDSRELKQLWSAVLGAAAAVA CCCCCCCCCHHHHHHHHEEEEECCCCEEEECCHHHEECCCCHHHHHHHHHHHHHHHHHHH GPHLTREYLTERLEFEGFGPLIKSLDQQVRNARLWTATEEAAMEDAREGYRQALAFHKRA CHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH KALRRQKMELEREIALATEAGDGEAIVQLMRAQQEVHFEGVRLENQEAIIDGFGVLSGRV HHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHHHCCEEECCCHHHHHHHHHHHCCC KGAANH CCCCCC >Mature Secondary Structure MRFSNTFLDDIRDRVPISNVIARRVSWDKRKTNVSRGDYWACCPFHGEKSPSFHCEDRKG CCCCHHHHHHHHHCCCHHHHHHHHHCCHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCC RYHCFGCGVTGDHFRFLTELEGLSFPEAVQQIADMAGVPMPLADPVMEKREKERGSLIDV CEEEEECCCCCHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCHHHHH MEMATQFFQDQLQTANGARARAYLRDRGLTGRTIETFRLGYAPDSRNALKEYLAGKGVTK HHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCHHEEEECCCCCCHHHHHHHHCCCCCCH EQIEACGLVVHENVPVSYDRFRDRIMFPILSSREKVIAFGGRAMSSDAPAKYLNSNETEL HHHHHCCEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHCCCCCEE FHKGNVLYNFARARRAIQGPSRGDAQDDNASGTIIAVEGYMDVIALYQAGIENAVAPLGT EECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHH ALTENQLELLWKMVPQPVLCFDGDGAGIRAANRAAELALPHLKPGRSVRFALLPDGKDPD HHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCCCCCCCCCEEEEECCCCCCHH DLVRDDGRAPFDKVMSQAKPLSEMLWSREVNTGKFDTPEARAELEARLKQLVAVIADENV HHHHCCCCCCHHHHHHHCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHH RRHYQQDIRDRLNAFFQPQFQNRNNGERRGFSGNSRTGRDNAVKAGPKSPSLISDRLARS HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHC GPVRGHRDNTALRESVLALTIVNHPSLMIDDYDEIAAIDYDSRELKQLWSAVLGAAAAVA CCCCCCCCCHHHHHHHHEEEEECCCCEEEECCHHHEECCCCHHHHHHHHHHHHHHHHHHH GPHLTREYLTERLEFEGFGPLIKSLDQQVRNARLWTATEEAAMEDAREGYRQALAFHKRA CHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH KALRRQKMELEREIALATEAGDGEAIVQLMRAQQEVHFEGVRLENQEAIIDGFGVLSGRV HHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHHHCCEEECCCHHHHHHHHHHHCCC KGAANH CCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Transferring phosphorus-containing groups; Nucleotidyltransferases [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]