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The map label for this gene is yoaB [C]

Identifier: 209550206

GI number: 209550206

Start: 2671215

End: 2671559

Strand: Reverse

Name: yoaB [C]

Synonym: Rleg2_2626

Alternate gene names: 209550206

Gene position: 2671559-2671215 (Counterclockwise)

Preceding gene: 209550207

Following gene: 209550201

Centisome position: 58.87

GC content: 60.87

Gene sequence:

>345_bases
ATGAGCATTAAGCGTATCGACGTCGGCGCACGCATGAGCGGCGCCGTCATTCACGGCAACACGGTTTATCTCGCAGGCCA
GGTCGGCGAAGGCGAAAGCGTTACCGATCAGTGCAAGTCCTCGCTTGCCGAAGTCGACCGCCTGCTGGCTGCATCCGGCA
GCAACAAGTCGAAGATCCTGCAGACGATCGTCTATCTCTCCGACATCGCTTATTTCGCCGAGATGAACGCCGCCTGGGAA
GCCTGGATCGATCCGGCCAATCCGCCGGCCCGCGCCACCAGCGAAGCCAAGCTCGCAGCGCCGAAATACAAGGTCGAGTT
CATCGTCACGGCCGCGATCGACTGA

Upstream 100 bases:

>100_bases
CCAGAAGACCCACCATATCCGCAGCTAGGCCGGTTCCGGCTGCCGATTTTCCGGCGCTGCATCGCAGCGCCGCCACCTTC
CATTCACTCAGGAGACTATG

Downstream 100 bases:

>100_bases
TCGTCGCCGCAGCATTGCGTCAAAGCCGGTAGGTGCGTGAGATCACGGACTTACCGGCTTTTTTGTTTGCGCGATTTCCG
AGAGCGTGCGTGTCGGCGTG

Product: endoribonuclease L-PSP

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 114; Mature: 113

Protein sequence:

>114_residues
MSIKRIDVGARMSGAVIHGNTVYLAGQVGEGESVTDQCKSSLAEVDRLLAASGSNKSKILQTIVYLSDIAYFAEMNAAWE
AWIDPANPPARATSEAKLAAPKYKVEFIVTAAID

Sequences:

>Translated_114_residues
MSIKRIDVGARMSGAVIHGNTVYLAGQVGEGESVTDQCKSSLAEVDRLLAASGSNKSKILQTIVYLSDIAYFAEMNAAWE
AWIDPANPPARATSEAKLAAPKYKVEFIVTAAID
>Mature_113_residues
SIKRIDVGARMSGAVIHGNTVYLAGQVGEGESVTDQCKSSLAEVDRLLAASGSNKSKILQTIVYLSDIAYFAEMNAAWEA
WIDPANPPARATSEAKLAAPKYKVEFIVTAAID

Specific function: Unknown

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Escherichia coli, GI87081979, Length=115, Percent_Identity=45.2173913043478, Blast_Score=96, Evalue=4e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 12146; Mature: 12015

Theoretical pI: Translated: 5.09; Mature: 5.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIKRIDVGARMSGAVIHGNTVYLAGQVGEGESVTDQCKSSLAEVDRLLAASGSNKSKIL
CCCEECCCCCCCCCEEEECCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHH
QTIVYLSDIAYFAEMNAAWEAWIDPANPPARATSEAKLAAPKYKVEFIVTAAID
HHHHHHHHHHHHHHCCCHHEEECCCCCCCCCCCCCCCCCCCCEEEEEEEEEECC
>Mature Secondary Structure 
SIKRIDVGARMSGAVIHGNTVYLAGQVGEGESVTDQCKSSLAEVDRLLAASGSNKSKIL
CCEECCCCCCCCCEEEECCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHH
QTIVYLSDIAYFAEMNAAWEAWIDPANPPARATSEAKLAAPKYKVEFIVTAAID
HHHHHHHHHHHHHHCCCHHEEECCCCCCCCCCCCCCCCCCCCEEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]