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The map label for this gene is yiaD [H]

Identifier: 209550136

GI number: 209550136

Start: 2587461

End: 2588126

Strand: Reverse

Name: yiaD [H]

Synonym: Rleg2_2554

Alternate gene names: 209550136

Gene position: 2588126-2587461 (Counterclockwise)

Preceding gene: 209550137

Following gene: 209550134

Centisome position: 57.03

GC content: 64.26

Gene sequence:

>666_bases
ATGATCAAGAAATTCGTACTTTTGGCTGTCGCAGCAAGTTATCTCACTGCCTGCACGACGACCGATCCCTATACCGGTGA
ACAGAAGGTTTCCAATACGGCGGGTGGCGCGGCGCTTGGTGCGCTTGGCGGTGCTCTCGTCGGCGTGGCTGTCGGCGGCG
GCGGCCACGGTAAGCGCAACGCAGCGCTGATCGGCGCCGGCGTCGGCGCGCTCGCCGGCGGGGCGATCGGCAATTACATG
GATCAGCAGGAATCCGAGCTTCGCGCCCAGCTCGAAGGCACCGGCATTTCGGTGACCCGCAATGGCGACAACATCATCCT
CAACATGCCGTCGAACATCACCTTCGACGTTGACCAGGATGCGGTAAAGCCGGGCTTCTATCCGACGCTGAATTCGGTGG
CGATCGTGCTGCGCAAGTTCAATCGCACGCTGATCGACGTCAACGGCCATACGGATTCGACCGGCAGCCTGCAGCACAAT
CAGGACCTGTCGCAGCGCCGCGCGCTTTCGGTTGCCGATTATCTCGGCGGCCAGGGCATCGACCAGCGCCGCGTCTCGGC
CGTCGGCTTCGGCCCGTCGCAACCGGTCGCCTCCAACGCCAGCGAGGCTGGCCGCGCCCAGAACCGCCGCGTCGAGATCC
AGATCGCGCCGATCACGCAGGGCTGA

Upstream 100 bases:

>100_bases
TTCGGCGCCTGAAATTCTCCTATCACGAGAGCATCTTCATTTTCTTGCCGCAATCCTTGCCATTTGCTCGCATCAGCTTC
GAACGGAGACCGTCCTGTCC

Downstream 100 bases:

>100_bases
GCCGGATTTTCCCATCTTTTAAGCGGCCGGGTTATGCCCGGCCGTTTTGTTATTGCTGCATCGCCGCACCCTTGGTGATC
TTGTCGACGATCTTCTTTTC

Product: OmpA/MotB domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 221; Mature: 221

Protein sequence:

>221_residues
MIKKFVLLAVAASYLTACTTTDPYTGEQKVSNTAGGAALGALGGALVGVAVGGGGHGKRNAALIGAGVGALAGGAIGNYM
DQQESELRAQLEGTGISVTRNGDNIILNMPSNITFDVDQDAVKPGFYPTLNSVAIVLRKFNRTLIDVNGHTDSTGSLQHN
QDLSQRRALSVADYLGGQGIDQRRVSAVGFGPSQPVASNASEAGRAQNRRVEIQIAPITQG

Sequences:

>Translated_221_residues
MIKKFVLLAVAASYLTACTTTDPYTGEQKVSNTAGGAALGALGGALVGVAVGGGGHGKRNAALIGAGVGALAGGAIGNYM
DQQESELRAQLEGTGISVTRNGDNIILNMPSNITFDVDQDAVKPGFYPTLNSVAIVLRKFNRTLIDVNGHTDSTGSLQHN
QDLSQRRALSVADYLGGQGIDQRRVSAVGFGPSQPVASNASEAGRAQNRRVEIQIAPITQG
>Mature_221_residues
MIKKFVLLAVAASYLTACTTTDPYTGEQKVSNTAGGAALGALGGALVGVAVGGGGHGKRNAALIGAGVGALAGGAIGNYM
DQQESELRAQLEGTGISVTRNGDNIILNMPSNITFDVDQDAVKPGFYPTLNSVAIVLRKFNRTLIDVNGHTDSTGSLQHN
QDLSQRRALSVADYLGGQGIDQRRVSAVGFGPSQPVASNASEAGRAQNRRVEIQIAPITQG

Specific function: Unknown

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential). Cell inner membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI48994946, Length=221, Percent_Identity=48.4162895927602, Blast_Score=173, Evalue=7e-45,
Organism=Escherichia coli, GI1786962, Length=98, Percent_Identity=32.6530612244898, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001035
- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 22734; Mature: 22734

Theoretical pI: Translated: 8.46; Mature: 8.46

Prosite motif: PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKKFVLLAVAASYLTACTTTDPYTGEQKVSNTAGGAALGALGGALVGVAVGGGGHGKRN
CCHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCHHHHHHHHEEEEEEECCCCCCCCC
AALIGAGVGALAGGAIGNYMDQQESELRAQLEGTGISVTRNGDNIILNMPSNITFDVDQD
EEEEECCHHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCEEEEECCCCEEEECCHH
AVKPGFYPTLNSVAIVLRKFNRTLIDVNGHTDSTGSLQHNQDLSQRRALSVADYLGGQGI
HCCCCCCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
DQRRVSAVGFGPSQPVASNASEAGRAQNRRVEIQIAPITQG
CCHHHEEECCCCCCCCCCCCHHHCCCCCCEEEEEEEECCCC
>Mature Secondary Structure
MIKKFVLLAVAASYLTACTTTDPYTGEQKVSNTAGGAALGALGGALVGVAVGGGGHGKRN
CCHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCHHHHHHHHEEEEEEECCCCCCCCC
AALIGAGVGALAGGAIGNYMDQQESELRAQLEGTGISVTRNGDNIILNMPSNITFDVDQD
EEEEECCHHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCEEEEECCCCEEEECCHH
AVKPGFYPTLNSVAIVLRKFNRTLIDVNGHTDSTGSLQHNQDLSQRRALSVADYLGGQGI
HCCCCCCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
DQRRVSAVGFGPSQPVASNASEAGRAQNRRVEIQIAPITQG
CCHHHEEECCCCCCCCCCCCHHHCCCCCCEEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503; 2180922 [H]