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The map label for this gene is ybfI [H]

Identifier: 209550134

GI number: 209550134

Start: 2586052

End: 2586918

Strand: Reverse

Name: ybfI [H]

Synonym: Rleg2_2552

Alternate gene names: 209550134

Gene position: 2586918-2586052 (Counterclockwise)

Preceding gene: 209550136

Following gene: 209550131

Centisome position: 57.01

GC content: 67.01

Gene sequence:

>867_bases
TTGTGCGCGGGACCATCCGGCAACGCCATCCTGGCGGCCCCGGCCTTTCCCGGTATCGAGCGCATCGAGGCGCAGTTTTC
CGGCAATGCCTTCGAGCCGCATCGACACGACACCTATGCGCTCGGCGTGACGCTGAAGGGCGTGCAGACTTTCGGCTATC
GCGGCGAGCGACGCTTCAGCCTGCCGGGCCAGGTGATCGTGCTGCATCCCGATGAGGAGCATGACGGCGGGGCGGGGACC
GAAGACGGGCTGCACTATCGCATGCTTTACCTGGAACCATCGCTGCTGCTCGAATGCCTGGAGGCCGATGGCGTCGGCCT
TCCCTTCGTCAGAGAACCTGTTATCGGCGATCCAACGCTGGCCTGCGTGCTGCTTGCCGCGCTCGGCGAACTCGACCGCG
AGTTGGACGAGCTTTTCGTCGACGACTTCGTCTTGCGGGTGACGGGTGGGCTGTCCAAGCATGCGCTGATGCCACGCCGG
CCGCTCGGCAGCGTCGCCTGGCGGCAGGCGCGGGCGGCGCGGGATTATCTCGAGGCGCATGCGTCGCGAGCGGTACGCTC
AGGCGAGCTGGAAGCGGTGACCGGGCTCGACCGTTTCGCGCTGTCGCGGCATTTCCGGGCGGCCTTCGCCACCAGTCCAC
ACCGCTATCTGCTGATGCGGCGGCTGCAGCAGGCCCGCGCCATGATCGGCGCAGGAGAGGGGATTTCGGACGCGGCGGCG
GCGACCGGCTTTGCCGACCAGAGCCATCTCAACCGGCATTTCAAGAAGGCCTACGGCATGACGCCTGGCCAGTGGGCAAC
GCTCGCCCACAATTCCGCCCCGCGCTTTATACGGGATTTTCCGCAAGGCCGGAGCGGCGGGCGATGA

Upstream 100 bases:

>100_bases
TTTGGTATCAAACATCGGACAGTCTTTCACCTCGGGTTATGGAGTATTGGGCGCGTTGAGCCAGGATCTACATCCGCAGG
CCTTCGAAGGTCTTGAACGT

Downstream 100 bases:

>100_bases
AGCGGGCGAGCGTCGGGCCGATCAGCAGAATGATGAGGAAGCGGCCGGTCTGCATCGCCATGACGAAAGGCACGTCGACA
TCGCTGGAGGCGGCGATGAT

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 288; Mature: 288

Protein sequence:

>288_residues
MCAGPSGNAILAAPAFPGIERIEAQFSGNAFEPHRHDTYALGVTLKGVQTFGYRGERRFSLPGQVIVLHPDEEHDGGAGT
EDGLHYRMLYLEPSLLLECLEADGVGLPFVREPVIGDPTLACVLLAALGELDRELDELFVDDFVLRVTGGLSKHALMPRR
PLGSVAWRQARAARDYLEAHASRAVRSGELEAVTGLDRFALSRHFRAAFATSPHRYLLMRRLQQARAMIGAGEGISDAAA
ATGFADQSHLNRHFKKAYGMTPGQWATLAHNSAPRFIRDFPQGRSGGR

Sequences:

>Translated_288_residues
MCAGPSGNAILAAPAFPGIERIEAQFSGNAFEPHRHDTYALGVTLKGVQTFGYRGERRFSLPGQVIVLHPDEEHDGGAGT
EDGLHYRMLYLEPSLLLECLEADGVGLPFVREPVIGDPTLACVLLAALGELDRELDELFVDDFVLRVTGGLSKHALMPRR
PLGSVAWRQARAARDYLEAHASRAVRSGELEAVTGLDRFALSRHFRAAFATSPHRYLLMRRLQQARAMIGAGEGISDAAA
ATGFADQSHLNRHFKKAYGMTPGQWATLAHNSAPRFIRDFPQGRSGGR
>Mature_288_residues
MCAGPSGNAILAAPAFPGIERIEAQFSGNAFEPHRHDTYALGVTLKGVQTFGYRGERRFSLPGQVIVLHPDEEHDGGAGT
EDGLHYRMLYLEPSLLLECLEADGVGLPFVREPVIGDPTLACVLLAALGELDRELDELFVDDFVLRVTGGLSKHALMPRR
PLGSVAWRQARAARDYLEAHASRAVRSGELEAVTGLDRFALSRHFRAAFATSPHRYLLMRRLQQARAMIGAGEGISDAAA
ATGFADQSHLNRHFKKAYGMTPGQWATLAHNSAPRFIRDFPQGRSGGR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 31411; Mature: 31411

Theoretical pI: Translated: 7.42; Mature: 7.42

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MCAGPSGNAILAAPAFPGIERIEAQFSGNAFEPHRHDTYALGVTLKGVQTFGYRGERRFS
CCCCCCCCEEEECCCCCCHHHHHHHHCCCCCCCCCCCEEEEEEEEECHHHHCCCCCEEEC
LPGQVIVLHPDEEHDGGAGTEDGLHYRMLYLEPSLLLECLEADGVGLPFVREPVIGDPTL
CCCCEEEECCCCCCCCCCCCCCCCEEEEEEECHHHHHHHHHCCCCCCCHHCCCCCCCHHH
ACVLLAALGELDRELDELFVDDFVLRVTGGLSKHALMPRRPLGSVAWRQARAARDYLEAH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHH
ASRAVRSGELEAVTGLDRFALSRHFRAAFATSPHRYLLMRRLQQARAMIGAGEGISDAAA
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCHHHH
ATGFADQSHLNRHFKKAYGMTPGQWATLAHNSAPRFIRDFPQGRSGGR
HCCCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHCCCCCCCCC
>Mature Secondary Structure
MCAGPSGNAILAAPAFPGIERIEAQFSGNAFEPHRHDTYALGVTLKGVQTFGYRGERRFS
CCCCCCCCEEEECCCCCCHHHHHHHHCCCCCCCCCCCEEEEEEEEECHHHHCCCCCEEEC
LPGQVIVLHPDEEHDGGAGTEDGLHYRMLYLEPSLLLECLEADGVGLPFVREPVIGDPTL
CCCCEEEECCCCCCCCCCCCCCCCEEEEEEECHHHHHHHHHCCCCCCCHHCCCCCCCHHH
ACVLLAALGELDRELDELFVDDFVLRVTGGLSKHALMPRRPLGSVAWRQARAARDYLEAH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHH
ASRAVRSGELEAVTGLDRFALSRHFRAAFATSPHRYLLMRRLQQARAMIGAGEGISDAAA
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCHHHH
ATGFADQSHLNRHFKKAYGMTPGQWATLAHNSAPRFIRDFPQGRSGGR
HCCCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]