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The map label for this gene is yqhC [H]

Identifier: 209550081

GI number: 209550081

Start: 2531037

End: 2531945

Strand: Reverse

Name: yqhC [H]

Synonym: Rleg2_2498

Alternate gene names: 209550081

Gene position: 2531945-2531037 (Counterclockwise)

Preceding gene: 209550083

Following gene: 209550080

Centisome position: 55.79

GC content: 63.81

Gene sequence:

>909_bases
ATGACTTTGCCCTTCAGCCCCTATCAGGAGATCGTCGATATCGCGATGCGCTTTGCGCCTCACGACGGTGAGTTCTCCAC
TTCAATCGGCAATCTTCATGTCAGCCGCCGGTCCAGGCCCAGCGATCCCTTGCACAGCAGCTACCGGCCCTGTTTTGCCT
TCGTGCTGCAGGGAGCCAAGAGCCTGCAGCTCGGCACGGAACAGATCAGCTACGGCACGGGGGATTATCTGCTGACCTCG
CTCGACCTGCCCGTCGCCTGGCGGGTCACGGAGGCAAGTCCCGAGGTTCCGCATCTCTGCCTGGGGCTGGCAATCGATTC
CGAAAAGCTTTTGGAGCTGCTCAGCCGCATCGATATTCCGCGCCCGGCCGCCCATACCGACGGGCAGCGTGGCATGGTGG
TGAACGTCGCGCCGCCCGAGCTGATGGATGCCGCCGTCCGCCTGCTGCGCTTGCTCGATCGTCCAGGTGACATTCCCGCC
ATGGCGCCACTGATCGAGCAGGAAATCCTCTACCGGGTGCTGACCGGGCCGCATGGCGCCCGGCTGATCAACATCGCCAC
ATCAGACAGCCACAGCAACAGGATCGCGCGTGCCGTCGCCTGGCTGAAGGAGAATTTCGCGCGGCCACTGCGCATCGAAG
ATCTTGCCGACCGCGTCAATATGAGCGTCTCGTCCTTCCATCACCACTTCAAATCGGTCACGGCGATGACGCCGGTGCAG
TATCAAAAGCAGCTTCGCCTGCATGAAGCGCGCCGGCTGATGTTCGTCGAGCGGCTCGACGCCGGCACGGCCGGCCACCG
CGTCGGCTATCAGAGCCCGTCGCAGTTCAGCCGCGAATACAGCCGCCTCTACGGCGCTTCGCCCGCCCGCGATGTCGATG
GCGGGCGCGAGATCATGGCGGCGGAATAG

Upstream 100 bases:

>100_bases
CGCCCGGCTGTTTGCGAAATGGCAAAGACACTCTAGATAAGGGCGATATCGCCCGCGCCAGACAGCTGACAGTCAGACAG
CTGACAGAGAGAGTTGCCGC

Downstream 100 bases:

>100_bases
CATTCAAGGATGTTCGGCGGCGGCCATCCGGTCATTAAAGGATGTTTGACGTTTCCGGGCTAGGCTGGCGCTATCAATCA
AGCAGGCACCGCCGTCCGCA

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 302; Mature: 301

Protein sequence:

>302_residues
MTLPFSPYQEIVDIAMRFAPHDGEFSTSIGNLHVSRRSRPSDPLHSSYRPCFAFVLQGAKSLQLGTEQISYGTGDYLLTS
LDLPVAWRVTEASPEVPHLCLGLAIDSEKLLELLSRIDIPRPAAHTDGQRGMVVNVAPPELMDAAVRLLRLLDRPGDIPA
MAPLIEQEILYRVLTGPHGARLINIATSDSHSNRIARAVAWLKENFARPLRIEDLADRVNMSVSSFHHHFKSVTAMTPVQ
YQKQLRLHEARRLMFVERLDAGTAGHRVGYQSPSQFSREYSRLYGASPARDVDGGREIMAAE

Sequences:

>Translated_302_residues
MTLPFSPYQEIVDIAMRFAPHDGEFSTSIGNLHVSRRSRPSDPLHSSYRPCFAFVLQGAKSLQLGTEQISYGTGDYLLTS
LDLPVAWRVTEASPEVPHLCLGLAIDSEKLLELLSRIDIPRPAAHTDGQRGMVVNVAPPELMDAAVRLLRLLDRPGDIPA
MAPLIEQEILYRVLTGPHGARLINIATSDSHSNRIARAVAWLKENFARPLRIEDLADRVNMSVSSFHHHFKSVTAMTPVQ
YQKQLRLHEARRLMFVERLDAGTAGHRVGYQSPSQFSREYSRLYGASPARDVDGGREIMAAE
>Mature_301_residues
TLPFSPYQEIVDIAMRFAPHDGEFSTSIGNLHVSRRSRPSDPLHSSYRPCFAFVLQGAKSLQLGTEQISYGTGDYLLTSL
DLPVAWRVTEASPEVPHLCLGLAIDSEKLLELLSRIDIPRPAAHTDGQRGMVVNVAPPELMDAAVRLLRLLDRPGDIPAM
APLIEQEILYRVLTGPHGARLINIATSDSHSNRIARAVAWLKENFARPLRIEDLADRVNMSVSSFHHHFKSVTAMTPVQY
QKQLRLHEARRLMFVERLDAGTAGHRVGYQSPSQFSREYSRLYGASPARDVDGGREIMAAE

Specific function: Unknown

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082197, Length=244, Percent_Identity=37.2950819672131, Blast_Score=158, Evalue=5e-40,
Organism=Escherichia coli, GI1790339, Length=109, Percent_Identity=29.3577981651376, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018060
- InterPro:   IPR009594 [H]

Pfam domain/function: PF06719 AraC_N; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 33657; Mature: 33526

Theoretical pI: Translated: 7.44; Mature: 7.44

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLPFSPYQEIVDIAMRFAPHDGEFSTSIGNLHVSRRSRPSDPLHSSYRPCFAFVLQGAK
CCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHCCCH
SLQLGTEQISYGTGDYLLTSLDLPVAWRVTEASPEVPHLCLGLAIDSEKLLELLSRIDIP
HHHCCHHHHCCCCCCCEEEECCCCEEEEEECCCCCCCCEEEEEEECHHHHHHHHHHCCCC
RPAAHTDGQRGMVVNVAPPELMDAAVRLLRLLDRPGDIPAMAPLIEQEILYRVLTGPHGA
CCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCC
RLINIATSDSHSNRIARAVAWLKENFARPLRIEDLADRVNMSVSSFHHHFKSVTAMTPVQ
EEEEEECCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHCCHHH
YQKQLRLHEARRLMFVERLDAGTAGHRVGYQSPSQFSREYSRLYGASPARDVDGGREIMA
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEC
AE
CC
>Mature Secondary Structure 
TLPFSPYQEIVDIAMRFAPHDGEFSTSIGNLHVSRRSRPSDPLHSSYRPCFAFVLQGAK
CCCCCHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHCCCH
SLQLGTEQISYGTGDYLLTSLDLPVAWRVTEASPEVPHLCLGLAIDSEKLLELLSRIDIP
HHHCCHHHHCCCCCCCEEEECCCCEEEEEECCCCCCCCEEEEEEECHHHHHHHHHHCCCC
RPAAHTDGQRGMVVNVAPPELMDAAVRLLRLLDRPGDIPAMAPLIEQEILYRVLTGPHGA
CCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCC
RLINIATSDSHSNRIARAVAWLKENFARPLRIEDLADRVNMSVSSFHHHFKSVTAMTPVQ
EEEEEECCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHCCHHH
YQKQLRLHEARRLMFVERLDAGTAGHRVGYQSPSQFSREYSRLYGASPARDVDGGREIMA
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEC
AE
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]