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The map label for this gene is cycA [H]

Identifier: 209549856

GI number: 209549856

Start: 2326718

End: 2327107

Strand: Reverse

Name: cycA [H]

Synonym: Rleg2_2269

Alternate gene names: 209549856

Gene position: 2327107-2326718 (Counterclockwise)

Preceding gene: 209549857

Following gene: 209549855

Centisome position: 51.28

GC content: 58.21

Gene sequence:

>390_bases
ATGGATTACCGTGTTGTTCTGCTGATTGGTGCAACTGCGATTGCCCTTTTCCCCGGTCATGCCGGGGCGCAGGAGGGTGA
TGCGACGGCTGGCGCCACTGTTTTCAAGAAATGCGCGACCTGTCATGTCGTCGAGTCCGATACCAACAAGGTCGGTCCGT
CGCTGAACAAGCTGTTCGGCAGGAAGGCCGGGACGCATCCCGATTTCGCCTATTCGGCCGCAATGAAGGCGGCCGGCGAA
GGCGGCCTCGTCTGGGACGAGGCGGTGCTGCGCGACTACCTCCATAATCCGAAGGCAAAGGTGAAAGGCACGAAGATGGC
CTTTGTCGGCGTGAAGGACGATCAGGAGATCACCGATCTCATCGCCTATCTCAAACAATATTCGCAGTGA

Upstream 100 bases:

>100_bases
CGCGAAGGATTAAGCTTCGAGCCATAACAACCACCACCCACACGCGAGAGATAATGGAGGGTGTGAGTGGCCGGCGACCT
TGAGGAGGATGAGGTTTGCC

Downstream 100 bases:

>100_bases
CGGGCAATATTCGCAGTGACGGGCAATACCCCAAATGACGGGCCGCGGCCGGGCGGCGCATGGCTAAATTGCCGTAATTG
CCGATATTTTCTATCTGTGC

Product: cytochrome C class I

Products: NA

Alternate protein names: Cytochrome c550 [H]

Number of amino acids: Translated: 129; Mature: 129

Protein sequence:

>129_residues
MDYRVVLLIGATAIALFPGHAGAQEGDATAGATVFKKCATCHVVESDTNKVGPSLNKLFGRKAGTHPDFAYSAAMKAAGE
GGLVWDEAVLRDYLHNPKAKVKGTKMAFVGVKDDQEITDLIAYLKQYSQ

Sequences:

>Translated_129_residues
MDYRVVLLIGATAIALFPGHAGAQEGDATAGATVFKKCATCHVVESDTNKVGPSLNKLFGRKAGTHPDFAYSAAMKAAGE
GGLVWDEAVLRDYLHNPKAKVKGTKMAFVGVKDDQEITDLIAYLKQYSQ
>Mature_129_residues
MDYRVVLLIGATAIALFPGHAGAQEGDATAGATVFKKCATCHVVESDTNKVGPSLNKLFGRKAGTHPDFAYSAAMKAAGE
GGLVWDEAVLRDYLHNPKAKVKGTKMAFVGVKDDQEITDLIAYLKQYSQ

Specific function: Plays a role in bacteroid respiration under conditions of oxygen limitation. Required for electron-transfer during denitrification [H]

COG id: COG3474

COG function: function code C; Cytochrome c2

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI11128019, Length=103, Percent_Identity=48.5436893203884, Blast_Score=99, Evalue=1e-21,
Organism=Caenorhabditis elegans, GI17566554, Length=102, Percent_Identity=46.078431372549, Blast_Score=90, Evalue=3e-19,
Organism=Caenorhabditis elegans, GI17539604, Length=101, Percent_Identity=45.5445544554455, Blast_Score=86, Evalue=5e-18,
Organism=Saccharomyces cerevisiae, GI6320796, Length=105, Percent_Identity=41.9047619047619, Blast_Score=86, Evalue=2e-18,
Organism=Saccharomyces cerevisiae, GI6322508, Length=103, Percent_Identity=43.6893203883495, Blast_Score=85, Evalue=3e-18,
Organism=Drosophila melanogaster, GI17137228, Length=110, Percent_Identity=46.3636363636364, Blast_Score=92, Evalue=8e-20,
Organism=Drosophila melanogaster, GI17137204, Length=102, Percent_Identity=44.1176470588235, Blast_Score=80, Evalue=4e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002327
- InterPro:   IPR009056
- InterPro:   IPR003088 [H]

Pfam domain/function: PF00034 Cytochrom_C [H]

EC number: NA

Molecular weight: Translated: 13760; Mature: 13760

Theoretical pI: Translated: 8.22; Mature: 8.22

Prosite motif: PS51007 CYTC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDYRVVLLIGATAIALFPGHAGAQEGDATAGATVFKKCATCHVVESDTNKVGPSLNKLFG
CCEEEEEEECCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHEEECCCCCCCCCHHHHHHC
RKAGTHPDFAYSAAMKAAGEGGLVWDEAVLRDYLHNPKAKVKGTKMAFVGVKDDQEITDL
CCCCCCCCHHHHHHHHHCCCCCCEEHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHH
IAYLKQYSQ
HHHHHHHCC
>Mature Secondary Structure
MDYRVVLLIGATAIALFPGHAGAQEGDATAGATVFKKCATCHVVESDTNKVGPSLNKLFG
CCEEEEEEECCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHEEECCCCCCCCCHHHHHHC
RKAGTHPDFAYSAAMKAAGEGGLVWDEAVLRDYLHNPKAKVKGTKMAFVGVKDDQEITDL
CCCCCCCCHHHHHHHHHCCCCCCEEHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHH
IAYLKQYSQ
HHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7721713; 12597275 [H]