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The map label for this gene is dapB [H]

Identifier: 209549832

GI number: 209549832

Start: 2297379

End: 2298149

Strand: Direct

Name: dapB [H]

Synonym: Rleg2_2244

Alternate gene names: 209549832

Gene position: 2297379-2298149 (Clockwise)

Preceding gene: 209549831

Following gene: 209549836

Centisome position: 50.63

GC content: 67.96

Gene sequence:

>771_bases
GTGACGCCACCAATCAAAATAGCGGTCGCCGGCGCGAACGGCCGAATGGGTCGCGCCATCCTGCCGCTGTTGGCGGCCGA
TCCGGCTTTTGCAGTCGTCGGCGGCATCGCTCGTCCCGGCTCCATCGGTGAAGGGCTGATCGACCGTGCGGCCGCGATCG
CCGCCGCCGACGTGATCCTGGATTTCACCACGGGACGTGCGGCCGCCGAACTTGCCGGCTTGTGCGCCTCGGCCGGCGGG
CCGGCCCTGGTAATCGGGGCGACGGGTTTCGAACCGGACGAACTCGAACGGATAGCAGAAGCGGCCCATAAGATTCCAAT
CCTGCGCTCCGGCAATTTCTCCATCGGCCTGAATATGCTGCTCGGCCTCGTCGCCCAGGCCGCACGCGCCCTTCCCGCGC
AGGGCTGGGATATCGAAATCCTCGAAGCCCATCATAACAGGAAGATCGACGCGCCTTCCGGCACGGCGCTGATGCTCGGT
GAGGCAGCCGCCCAGGGCCGCGGCGTTTCCCTCGCCTCCGTCGAGCGGCGCGGCCGCGACGGCATCACCGGAGAACGGCG
GCCCGGCGAAATCGGCTTCGCCGTCCTGCGCGCCGGCGGGCTCGTCGGAGAACACAGCGTGCTGTTTGCCGCCGCCGAGG
AAGTCGTGACACTTTCGCATTCGGCGCTCGACCGCGGCATGTTTGCCCGCGGCGCACTTGCCGCCGCTCGCTGGGTCGCG
GGACGCACAGCAGGCGAATACAGCATGCAGGATGTCCTCAATCTCGCCTGA

Upstream 100 bases:

>100_bases
GCGCCGGGAGCGGAAGTGCGGTAGGTGCAAATCCCCTTCTCCGGCGCGAACGCCGGATGAAGACAGCCCCTCCATCGGAA
TACCGCAGCAAGGAAAAACT

Downstream 100 bases:

>100_bases
GAAGGGGCGAAGAGACAGAGTGAACAGGGGCTTGAAGCGCGTCCTTGAATCAAAGTCTAAGCGCGTCCCTGGTTGCGCCC
GGCCTCCAAGAGAGCCTCAT

Product: dihydrodipicolinate reductase

Products: NA

Alternate protein names: DHPR [H]

Number of amino acids: Translated: 256; Mature: 255

Protein sequence:

>256_residues
MTPPIKIAVAGANGRMGRAILPLLAADPAFAVVGGIARPGSIGEGLIDRAAAIAAADVILDFTTGRAAAELAGLCASAGG
PALVIGATGFEPDELERIAEAAHKIPILRSGNFSIGLNMLLGLVAQAARALPAQGWDIEILEAHHNRKIDAPSGTALMLG
EAAAQGRGVSLASVERRGRDGITGERRPGEIGFAVLRAGGLVGEHSVLFAAAEEVVTLSHSALDRGMFARGALAAARWVA
GRTAGEYSMQDVLNLA

Sequences:

>Translated_256_residues
MTPPIKIAVAGANGRMGRAILPLLAADPAFAVVGGIARPGSIGEGLIDRAAAIAAADVILDFTTGRAAAELAGLCASAGG
PALVIGATGFEPDELERIAEAAHKIPILRSGNFSIGLNMLLGLVAQAARALPAQGWDIEILEAHHNRKIDAPSGTALMLG
EAAAQGRGVSLASVERRGRDGITGERRPGEIGFAVLRAGGLVGEHSVLFAAAEEVVTLSHSALDRGMFARGALAAARWVA
GRTAGEYSMQDVLNLA
>Mature_255_residues
TPPIKIAVAGANGRMGRAILPLLAADPAFAVVGGIARPGSIGEGLIDRAAAIAAADVILDFTTGRAAAELAGLCASAGGP
ALVIGATGFEPDELERIAEAAHKIPILRSGNFSIGLNMLLGLVAQAARALPAQGWDIEILEAHHNRKIDAPSGTALMLGE
AAAQGRGVSLASVERRGRDGITGERRPGEIGFAVLRAGGLVGEHSVLFAAAEEVVTLSHSALDRGMFARGALAAARWVAG
RTAGEYSMQDVLNLA

Specific function: Biosynthesis of diaminopimelate and lysine from aspartate semialdehyde; second step. [C]

COG id: COG0289

COG function: function code E; Dihydrodipicolinate reductase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dihydrodipicolinate reductase family [H]

Homologues:

Organism=Escherichia coli, GI1786214, Length=267, Percent_Identity=38.5767790262172, Blast_Score=157, Evalue=5e-40,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022663
- InterPro:   IPR000846
- InterPro:   IPR022664
- InterPro:   IPR011770
- InterPro:   IPR016040 [H]

Pfam domain/function: PF05173 DapB_C; PF01113 DapB_N [H]

EC number: =1.3.1.26 [H]

Molecular weight: Translated: 26018; Mature: 25887

Theoretical pI: Translated: 6.36; Mature: 6.36

Prosite motif: PS01298 DAPB

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPPIKIAVAGANGRMGRAILPLLAADPAFAVVGGIARPGSIGEGLIDRAAAIAAADVIL
CCCCEEEEEECCCCCCCHHHHHHHHCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHE
DFTTGRAAAELAGLCASAGGPALVIGATGFEPDELERIAEAAHKIPILRSGNFSIGLNML
ECCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHCCEEECCCCCCHHHHH
LGLVAQAARALPAQGWDIEILEAHHNRKIDAPSGTALMLGEAAAQGRGVSLASVERRGRD
HHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCEEEEECHHCCCCCCCHHHHHHCCCC
GITGERRPGEIGFAVLRAGGLVGEHSVLFAAAEEVVTLSHSALDRGMFARGALAAARWVA
CCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
GRTAGEYSMQDVLNLA
CCCCCCHHHHHHHHCC
>Mature Secondary Structure 
TPPIKIAVAGANGRMGRAILPLLAADPAFAVVGGIARPGSIGEGLIDRAAAIAAADVIL
CCCEEEEEECCCCCCCHHHHHHHHCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHE
DFTTGRAAAELAGLCASAGGPALVIGATGFEPDELERIAEAAHKIPILRSGNFSIGLNML
ECCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHCCEEECCCCCCHHHHH
LGLVAQAARALPAQGWDIEILEAHHNRKIDAPSGTALMLGEAAAQGRGVSLASVERRGRD
HHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCEEEEECHHCCCCCCCHHHHHHCCCC
GITGERRPGEIGFAVLRAGGLVGEHSVLFAAAEEVVTLSHSALDRGMFARGALAAARWVA
CCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
GRTAGEYSMQDVLNLA
CCCCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11259647 [H]