| Definition | Rhizobium leguminosarum bv. trifolii WSM2304 chromosome, complete genome. |
|---|---|
| Accession | NC_011369 |
| Length | 4,537,948 |
Click here to switch to the map view.
The map label for this gene is zraS [C]
Identifier: 209549636
GI number: 209549636
Start: 2105018
End: 2107093
Strand: Reverse
Name: zraS [C]
Synonym: Rleg2_2043
Alternate gene names: 209549636
Gene position: 2107093-2105018 (Counterclockwise)
Preceding gene: 209549637
Following gene: 209549632
Centisome position: 46.43
GC content: 61.66
Gene sequence:
>2076_bases TTGACCGATCAGACCGGATTACCTTCGATAGCCGTTGCCGATCTGAGGCAGTTCGCCGCGTCACTCGATGAGGAAATCGC GGTCGGCGTCCTGACCGAAGAGGCCGTCCGCGGAAATGACCTCAGACCGATTGCTGCCTGGGTTGCCGCCCAACCGAGTT GGTCCGACCTGCCATTCATCGTCCTGACCCAGCGCGGCGGGGGACCTGAACGAAACCCTGCCGCCGCCAAGCTTTCCGAA ATCCTTGGCAATGTGACCTTTCTGGAGAGGCCCTTCCATGCGACGTCCTTCATCAGTGTTGCGCGGACTGCATTAAGGGG GCGCCTGCGCCAGTATGAAGCGCGCGCCCGGCTGGAGGCATTAGGCGAGGGAGAGCGGCGGTTGCAGACAGCACTTGCGG CCGGCCGTCTCGGGGCGTGGGAGCTGGAACTATCCTCGATGGCCTTGTCTGCATCGGCGACCTGCAAAGCTGTCTTCGGT CGAGAGCCGGACGTTGAGGTGACGCGTGATGATCTGATCGCCAGCATCCACCCTGACGATCGCGACCTTGTGCTGACACG CCTTCGCGAGACGATCGATACGGGACGCGATTATTCGATCGAGCATAGAACGATCTGGCCGGATGGATCAGAGCATTGGA CCGAGGTTCATGCCCAGCTTTATGCCGACAGATATGGCTCTGCGCGGAAGCTTGTCGGGGTCTGCTCCGATACCACTGTT CGCAAGACCATTGAGGAGAATCTGAGACGGCTCAACGAGAATCTCGAGGAGCGCGTCAGGGAAAGGACCAGGGAAGTCAA CGCTGCCCACCAGACGTTGCTTGAAGAGGTCGCCCAGCGTGAGAGAGCCGAAGAGCAGCTCCGCCAATCCCAGAAAATGG AAGCGATCGGTCAACTTACGGGCGGCGTTGCCCACGACTTCAACAATCTGTTGATGGTGGTTCTCGGAAATCTGGAGCTG CTCGGCAAACATTTTGCCGGAGATGGCAAGGCGATGCGGCTGGTCGACGGGGCGCTTCAGGGCGCGCGCCGAGGGGCGGC GCTGACACAGCGTTTGCTTGCCTTTGCCAGACAGCAGGATCTGCAGGTCAAGCCCGTCGATCTGGCCGATCTGGTCTCCG GGATGAACGACTTGCTGCGGCGCTCGGTCGGATCCTCGATCAGTATCGAGACCACCTTGCCGGCGAAATTGCCGCCGGCG CTGGTCGATGCGAACCAGCTCGAACTGGCGCTGCTCAACCTTGCGGTCAATGCCCGCGATGCGATGCCGGATGGCGGAAT GTTGTCGATTTCGCTACGCGAGGAGCAGGTTGTCGGCAATGACGGCGATCTCGGCGAGGGAGCCTATCTCGTGTTGGCGG TGGCCGACAGCGGCACGGGCATGGATGCCGAGACGCTGAAGAAGGCCGTCGATCCGTTTTTCTCGACCAAGGAACTCGGA AAGGGTACTGGCCTCGGCCTTTCGATGATCCATGGACTTGCCGTTCAGCTCAATGGCGCGCTTGTTCTGACAAGCGAACT TGGCGTAGGGACGACCGCCGAATTGTGGCTTCCGGCGACCGAACAGCGCGCCGAGCGGCCGGCTGAGGCTGTGCTCTCCA CACCGCAGGCTGCATCCCGACTGAAGATCCTTCTGGTCGACGACGACGCCTTGATCGCCATGAGTTCGGTCGACATGCTC GAAGATCTCGGCCACGAGGTCGTCGAGGCAAATTCCGGCGCGCAGGCGCTCGAGCTGATCGGGAGCGGCCAGCATTTCGA TCTGATGATCACCGACTATTCGATGCCCGGCATGACAGGCGCACAGCTCGCCGAGGCGGCGCGGGCCATTCATCCGGCGC TGCCGATCGTGCTGGCGACCGGCTATGCCGATCTTCCCGCCGGCACCGACATTGATCTACCGAGACTGGCGAAACCCTAT AACCAGGACCAGCTTGCCAGGGAAATCGCTAAGGCGGTGGCAGGCGAAGCGAATCCGCCTCTCAGGTTCGATAGCCGGAT AAGCGGCTCAGGGGCGGGGCGTCTCGAGACCGACGATGCCGGCGATGAAATCGGCGATGGCGCCTGTGTCGTCTAG
Upstream 100 bases:
>100_bases TTGCCAACCGACAACAAGGACGGCGGCAATTCTTAATTTCCCGAACCCGAAGGCCCTGATCTACGCACCGGCCGGACGCG ACGCACAGGTCGCCGCATCA
Downstream 100 bases:
>100_bases ATCGAAGACCGGCAGGGCCGTATCCGTCACGGCGTGGTCGGCGGCGATGGCGCAGATATGGGGATCGCTCGGCGCCAGCG GCTGGCGGTTGGCGGCCTCC
Product: PAS/PAC sensor hybrid histidine kinase
Products: NA
Alternate protein names: Blue-light-activated histidine kinase; Response regulator [H]
Number of amino acids: Translated: 691; Mature: 690
Protein sequence:
>691_residues MTDQTGLPSIAVADLRQFAASLDEEIAVGVLTEEAVRGNDLRPIAAWVAAQPSWSDLPFIVLTQRGGGPERNPAAAKLSE ILGNVTFLERPFHATSFISVARTALRGRLRQYEARARLEALGEGERRLQTALAAGRLGAWELELSSMALSASATCKAVFG REPDVEVTRDDLIASIHPDDRDLVLTRLRETIDTGRDYSIEHRTIWPDGSEHWTEVHAQLYADRYGSARKLVGVCSDTTV RKTIEENLRRLNENLEERVRERTREVNAAHQTLLEEVAQRERAEEQLRQSQKMEAIGQLTGGVAHDFNNLLMVVLGNLEL LGKHFAGDGKAMRLVDGALQGARRGAALTQRLLAFARQQDLQVKPVDLADLVSGMNDLLRRSVGSSISIETTLPAKLPPA LVDANQLELALLNLAVNARDAMPDGGMLSISLREEQVVGNDGDLGEGAYLVLAVADSGTGMDAETLKKAVDPFFSTKELG KGTGLGLSMIHGLAVQLNGALVLTSELGVGTTAELWLPATEQRAERPAEAVLSTPQAASRLKILLVDDDALIAMSSVDML EDLGHEVVEANSGAQALELIGSGQHFDLMITDYSMPGMTGAQLAEAARAIHPALPIVLATGYADLPAGTDIDLPRLAKPY NQDQLAREIAKAVAGEANPPLRFDSRISGSGAGRLETDDAGDEIGDGACVV
Sequences:
>Translated_691_residues MTDQTGLPSIAVADLRQFAASLDEEIAVGVLTEEAVRGNDLRPIAAWVAAQPSWSDLPFIVLTQRGGGPERNPAAAKLSE ILGNVTFLERPFHATSFISVARTALRGRLRQYEARARLEALGEGERRLQTALAAGRLGAWELELSSMALSASATCKAVFG REPDVEVTRDDLIASIHPDDRDLVLTRLRETIDTGRDYSIEHRTIWPDGSEHWTEVHAQLYADRYGSARKLVGVCSDTTV RKTIEENLRRLNENLEERVRERTREVNAAHQTLLEEVAQRERAEEQLRQSQKMEAIGQLTGGVAHDFNNLLMVVLGNLEL LGKHFAGDGKAMRLVDGALQGARRGAALTQRLLAFARQQDLQVKPVDLADLVSGMNDLLRRSVGSSISIETTLPAKLPPA LVDANQLELALLNLAVNARDAMPDGGMLSISLREEQVVGNDGDLGEGAYLVLAVADSGTGMDAETLKKAVDPFFSTKELG KGTGLGLSMIHGLAVQLNGALVLTSELGVGTTAELWLPATEQRAERPAEAVLSTPQAASRLKILLVDDDALIAMSSVDML EDLGHEVVEANSGAQALELIGSGQHFDLMITDYSMPGMTGAQLAEAARAIHPALPIVLATGYADLPAGTDIDLPRLAKPY NQDQLAREIAKAVAGEANPPLRFDSRISGSGAGRLETDDAGDEIGDGACVV >Mature_690_residues TDQTGLPSIAVADLRQFAASLDEEIAVGVLTEEAVRGNDLRPIAAWVAAQPSWSDLPFIVLTQRGGGPERNPAAAKLSEI LGNVTFLERPFHATSFISVARTALRGRLRQYEARARLEALGEGERRLQTALAAGRLGAWELELSSMALSASATCKAVFGR EPDVEVTRDDLIASIHPDDRDLVLTRLRETIDTGRDYSIEHRTIWPDGSEHWTEVHAQLYADRYGSARKLVGVCSDTTVR KTIEENLRRLNENLEERVRERTREVNAAHQTLLEEVAQRERAEEQLRQSQKMEAIGQLTGGVAHDFNNLLMVVLGNLELL GKHFAGDGKAMRLVDGALQGARRGAALTQRLLAFARQQDLQVKPVDLADLVSGMNDLLRRSVGSSISIETTLPAKLPPAL VDANQLELALLNLAVNARDAMPDGGMLSISLREEQVVGNDGDLGEGAYLVLAVADSGTGMDAETLKKAVDPFFSTKELGK GTGLGLSMIHGLAVQLNGALVLTSELGVGTTAELWLPATEQRAERPAEAVLSTPQAASRLKILLVDDDALIAMSSVDMLE DLGHEVVEANSGAQALELIGSGQHFDLMITDYSMPGMTGAQLAEAARAIHPALPIVLATGYADLPAGTDIDLPRLAKPYN QDQLAREIAKAVAGEANPPLRFDSRISGSGAGRLETDDAGDEIGDGACVV
Specific function: Photosensitive kinase and response regulator that is involved in increased bacterial virulence upon exposure to light [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Integral Membrane Protein. Inner Membrane [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 response regulatory domain [H]
Homologues:
Organism=Escherichia coli, GI1790436, Length=251, Percent_Identity=30.6772908366534, Blast_Score=105, Evalue=7e-24, Organism=Escherichia coli, GI1788713, Length=338, Percent_Identity=27.2189349112426, Blast_Score=84, Evalue=2e-17, Organism=Escherichia coli, GI48994928, Length=423, Percent_Identity=25.7683215130024, Blast_Score=84, Evalue=3e-17, Organism=Escherichia coli, GI1788549, Length=251, Percent_Identity=26.2948207171315, Blast_Score=81, Evalue=2e-16, Organism=Escherichia coli, GI87081816, Length=238, Percent_Identity=27.7310924369748, Blast_Score=79, Evalue=8e-16, Organism=Escherichia coli, GI145693157, Length=286, Percent_Identity=25.8741258741259, Blast_Score=67, Evalue=4e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR011006 - InterPro: IPR001610 - InterPro: IPR000014 - InterPro: IPR000700 - InterPro: IPR013767 - InterPro: IPR004358 - InterPro: IPR003661 - InterPro: IPR005467 - InterPro: IPR009082 - InterPro: IPR001789 [H]
Pfam domain/function: PF02518 HATPase_c; PF00512 HisKA; PF00989 PAS; PF00072 Response_reg [H]
EC number: =2.7.13.3 [H]
Molecular weight: Translated: 74207; Mature: 74076
Theoretical pI: Translated: 4.59; Mature: 4.59
Prosite motif: PS50112 PAS ; PS50113 PAC ; PS50110 RESPONSE_REGULATORY ; PS50109 HIS_KIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDQTGLPSIAVADLRQFAASLDEEIAVGVLTEEAVRGNDLRPIAAWVAAQPSWSDLPFI CCCCCCCCHHHHHHHHHHHHCCCHHHEEEEEEHHHHCCCCCCHHHHHHCCCCCCCCCCEE VLTQRGGGPERNPAAAKLSEILGNVTFLERPFHATSFISVARTALRGRLRQYEARARLEA EEEECCCCCCCCHHHHHHHHHHCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH LGEGERRLQTALAAGRLGAWELELSSMALSASATCKAVFGREPDVEVTRDDLIASIHPDD HCCHHHHHHHHHHHCCCCEEEEEHHHHHHCCCCHHHHHCCCCCCCEECHHHEEEECCCCC RDLVLTRLRETIDTGRDYSIEHRTIWPDGSEHWTEVHAQLYADRYGSARKLVGVCSDTTV HHHHHHHHHHHHHCCCCCCCCCCEECCCCHHHHHHHHHHHHHHHCCCHHHHHEECCCHHH RKTIEENLRRLNENLEERVRERTREVNAAHQTLLEEVAQRERAEEQLRQSQKMEAIGQLT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GGVAHDFNNLLMVVLGNLELLGKHFAGDGKAMRLVDGALQGARRGAALTQRLLAFARQQD CHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC LQVKPVDLADLVSGMNDLLRRSVGSSISIETTLPAKLPPALVDANQLELALLNLAVNARD CCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHCCCCHHHEEHHHHHCCCCC AMPDGGMLSISLREEQVVGNDGDLGEGAYLVLAVADSGTGMDAETLKKAVDPFFSTKELG CCCCCCEEEEEEEHHHCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHCCCCCHHHHC KGTGLGLSMIHGLAVQLNGALVLTSELGVGTTAELWLPATEQRAERPAEAVLSTPQAASR CCCCCHHHHHHHHHEEECCEEEEEECCCCCCCHHEECCCHHHHHCCCHHHHHCCCCCCCC LKILLVDDDALIAMSSVDMLEDLGHEVVEANSGAQALELIGSGQHFDLMITDYSMPGMTG EEEEEECCCCEEEHHHHHHHHHCCHHHHHCCCCHHHHHHHCCCCEEEEEEEECCCCCCCH AQLAEAARAIHPALPIVLATGYADLPAGTDIDLPRLAKPYNQDQLAREIAKAVAGEANPP HHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHCCCCCCC LRFDSRISGSGAGRLETDDAGDEIGDGACVV CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure TDQTGLPSIAVADLRQFAASLDEEIAVGVLTEEAVRGNDLRPIAAWVAAQPSWSDLPFI CCCCCCCHHHHHHHHHHHHCCCHHHEEEEEEHHHHCCCCCCHHHHHHCCCCCCCCCCEE VLTQRGGGPERNPAAAKLSEILGNVTFLERPFHATSFISVARTALRGRLRQYEARARLEA EEEECCCCCCCCHHHHHHHHHHCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH LGEGERRLQTALAAGRLGAWELELSSMALSASATCKAVFGREPDVEVTRDDLIASIHPDD HCCHHHHHHHHHHHCCCCEEEEEHHHHHHCCCCHHHHHCCCCCCCEECHHHEEEECCCCC RDLVLTRLRETIDTGRDYSIEHRTIWPDGSEHWTEVHAQLYADRYGSARKLVGVCSDTTV HHHHHHHHHHHHHCCCCCCCCCCEECCCCHHHHHHHHHHHHHHHCCCHHHHHEECCCHHH RKTIEENLRRLNENLEERVRERTREVNAAHQTLLEEVAQRERAEEQLRQSQKMEAIGQLT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GGVAHDFNNLLMVVLGNLELLGKHFAGDGKAMRLVDGALQGARRGAALTQRLLAFARQQD CHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC LQVKPVDLADLVSGMNDLLRRSVGSSISIETTLPAKLPPALVDANQLELALLNLAVNARD CCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHCCCCHHHEEHHHHHCCCCC AMPDGGMLSISLREEQVVGNDGDLGEGAYLVLAVADSGTGMDAETLKKAVDPFFSTKELG CCCCCCEEEEEEEHHHCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHCCCCCHHHHC KGTGLGLSMIHGLAVQLNGALVLTSELGVGTTAELWLPATEQRAERPAEAVLSTPQAASR CCCCCHHHHHHHHHEEECCEEEEEECCCCCCCHHEECCCHHHHHCCCHHHHHCCCCCCCC LKILLVDDDALIAMSSVDMLEDLGHEVVEANSGAQALELIGSGQHFDLMITDYSMPGMTG EEEEEECCCCEEEHHHHHHHHHCCHHHHHCCCCHHHHHHHCCCCEEEEEEEECCCCCCCH AQLAEAARAIHPALPIVLATGYADLPAGTDIDLPRLAKPYNQDQLAREIAKAVAGEANPP HHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHCCCCCCC LRFDSRISGSGAGRLETDDAGDEIGDGACVV CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA