| Definition | Rhizobium leguminosarum bv. trifolii WSM2304 chromosome, complete genome. |
|---|---|
| Accession | NC_011369 |
| Length | 4,537,948 |
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The map label for this gene is gdhII [H]
Identifier: 209549632
GI number: 209549632
Start: 2101915
End: 2102682
Strand: Reverse
Name: gdhII [H]
Synonym: Rleg2_2039
Alternate gene names: 209549632
Gene position: 2102682-2101915 (Counterclockwise)
Preceding gene: 209549636
Following gene: 209549626
Centisome position: 46.34
GC content: 66.8
Gene sequence:
>768_bases ATGACACTTCTGAACGATAAGGTCGCGATCATCACCGGCGCAAGCTCCGGCATCGGCCGCGCCGCGGCGAAACTCTTTGC ACGGGAGGGCGCCAAACTCGTGGTCACCGGGAGGCGACAAGAGGCGCTCGACGCCGTCGTTGCCGAAATCGAGGCGGAGG GCGGGCAGGCCGTCGCCCTATCGGGCGACGTCAGGGACGAGGCGTTGCAGGCAAGGCTTTGTGAAACGGCTGTCTCACGC TTCGGCGGGCTCGACATCGGCTTCAACAATGCCGGCATTCTCGGCGAGATGGGGCCGGTGGCGGAGATGTCGCCGGAGGG CTGGCGCGAGACGATCGAGACCAATCTGACCGCCGCCTTCCTCGGCGCCAAACATCAGTCGGCAGCGATGAAAAACGGCG GCGGGTCGCTGATCTTCACCTCCACCTTCGTCGGCCACACCGCCGGCATGCCGGGCATGGCCGCCTATGCTGCGAGTAAG GCGGGGCTGATCGGCTTCGTGCAGGTGCTCGCCGCCGAACTGGGGCGGCAGAATATCCGCGTCAACGCCCTGCTGCCGGG CGGCACCGACACGCCGGCCAGCATCACCAATGCGCCGGATGCGACGGCAGAAGTGCTCGCCTTCGTCGAGGGACTGCATG CGCTGAAGCGCATGGCCCAGCCGGAGGAGATCGCCAATGCGGCGCTGTTCCTGGCGTCGGATATGGCGAGCTTCGTGACG GGGACGGCGATGCTGGCGGATGGCGGGGTTTCGATCAGCCGGACGTAG
Upstream 100 bases:
>100_bases TCGGCTGTCGGCGGTATTCGTTTGCCCGCGCGGGAAACGGGTGGCTGCAGCGCCCGATGTTTGAGATTCCGGATGCCTCG ACAACTGAGGAGAAACGGAC
Downstream 100 bases:
>100_bases GGTTGGTGAGAGGGCATTTTGCCCAGGCAATGAAAGATGTGCCGTGCGGGCCCCTCATCTGCCTGCCGGCATCGACCGGG GTCGAGCCACGGGTCTCGAC
Product: short chain dehydrogenase
Products: NA
Alternate protein names: GLCDH-II [H]
Number of amino acids: Translated: 255; Mature: 254
Protein sequence:
>255_residues MTLLNDKVAIITGASSGIGRAAAKLFAREGAKLVVTGRRQEALDAVVAEIEAEGGQAVALSGDVRDEALQARLCETAVSR FGGLDIGFNNAGILGEMGPVAEMSPEGWRETIETNLTAAFLGAKHQSAAMKNGGGSLIFTSTFVGHTAGMPGMAAYAASK AGLIGFVQVLAAELGRQNIRVNALLPGGTDTPASITNAPDATAEVLAFVEGLHALKRMAQPEEIANAALFLASDMASFVT GTAMLADGGVSISRT
Sequences:
>Translated_255_residues MTLLNDKVAIITGASSGIGRAAAKLFAREGAKLVVTGRRQEALDAVVAEIEAEGGQAVALSGDVRDEALQARLCETAVSR FGGLDIGFNNAGILGEMGPVAEMSPEGWRETIETNLTAAFLGAKHQSAAMKNGGGSLIFTSTFVGHTAGMPGMAAYAASK AGLIGFVQVLAAELGRQNIRVNALLPGGTDTPASITNAPDATAEVLAFVEGLHALKRMAQPEEIANAALFLASDMASFVT GTAMLADGGVSISRT >Mature_254_residues TLLNDKVAIITGASSGIGRAAAKLFAREGAKLVVTGRRQEALDAVVAEIEAEGGQAVALSGDVRDEALQARLCETAVSRF GGLDIGFNNAGILGEMGPVAEMSPEGWRETIETNLTAAFLGAKHQSAAMKNGGGSLIFTSTFVGHTAGMPGMAAYAASKA GLIGFVQVLAAELGRQNIRVNALLPGGTDTPASITNAPDATAEVLAFVEGLHALKRMAQPEEIANAALFLASDMASFVTG TAMLADGGVSISRT
Specific function: Fatty acid biosynthesis pathway; first reduction step. [C]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI32483357, Length=247, Percent_Identity=35.2226720647773, Blast_Score=134, Evalue=7e-32, Organism=Homo sapiens, GI19923817, Length=260, Percent_Identity=31.1538461538462, Blast_Score=117, Evalue=9e-27, Organism=Homo sapiens, GI5031737, Length=239, Percent_Identity=28.4518828451883, Blast_Score=107, Evalue=1e-23, Organism=Homo sapiens, GI40254992, Length=248, Percent_Identity=33.0645161290323, Blast_Score=103, Evalue=2e-22, Organism=Homo sapiens, GI126723191, Length=182, Percent_Identity=35.1648351648352, Blast_Score=103, Evalue=2e-22, Organism=Homo sapiens, GI126723750, Length=253, Percent_Identity=32.8063241106719, Blast_Score=102, Evalue=4e-22, Organism=Homo sapiens, GI15277342, Length=258, Percent_Identity=33.7209302325581, Blast_Score=99, Evalue=4e-21, Organism=Homo sapiens, GI33667109, Length=189, Percent_Identity=29.6296296296296, Blast_Score=94, Evalue=2e-19, Organism=Homo sapiens, GI10190704, Length=255, Percent_Identity=30.9803921568627, Blast_Score=91, Evalue=7e-19, Organism=Homo sapiens, GI66933014, Length=259, Percent_Identity=30.8880308880309, Blast_Score=88, Evalue=6e-18, Organism=Homo sapiens, GI59889578, Length=236, Percent_Identity=30.9322033898305, Blast_Score=86, Evalue=2e-17, Organism=Homo sapiens, GI31542939, Length=250, Percent_Identity=30.8, Blast_Score=86, Evalue=3e-17, Organism=Homo sapiens, GI4504505, Length=241, Percent_Identity=32.3651452282158, Blast_Score=86, Evalue=5e-17, Organism=Homo sapiens, GI4503301, Length=246, Percent_Identity=29.6747967479675, Blast_Score=82, Evalue=5e-16, Organism=Homo sapiens, GI20149619, Length=204, Percent_Identity=31.3725490196078, Blast_Score=79, Evalue=4e-15, Organism=Homo sapiens, GI7705925, Length=244, Percent_Identity=28.2786885245902, Blast_Score=75, Evalue=6e-14, Organism=Homo sapiens, GI109715829, Length=249, Percent_Identity=25.7028112449799, Blast_Score=73, Evalue=3e-13, Organism=Homo sapiens, GI32455239, Length=192, Percent_Identity=30.7291666666667, Blast_Score=72, Evalue=5e-13, Organism=Homo sapiens, GI5031765, Length=192, Percent_Identity=30.7291666666667, Blast_Score=72, Evalue=5e-13, Organism=Homo sapiens, GI224922801, Length=185, Percent_Identity=31.8918918918919, Blast_Score=70, Evalue=3e-12, Organism=Homo sapiens, GI142976729, Length=189, Percent_Identity=28.042328042328, Blast_Score=68, Evalue=9e-12, Organism=Homo sapiens, GI302344755, Length=109, Percent_Identity=36.697247706422, Blast_Score=67, Evalue=2e-11, Organism=Escherichia coli, GI1787335, Length=247, Percent_Identity=38.4615384615385, Blast_Score=126, Evalue=1e-30, Organism=Escherichia coli, GI87082100, Length=260, Percent_Identity=33.8461538461538, Blast_Score=125, Evalue=3e-30, Organism=Escherichia coli, GI1787526, Length=252, Percent_Identity=34.5238095238095, Blast_Score=122, Evalue=2e-29, Organism=Escherichia coli, GI1787905, Length=248, Percent_Identity=37.0967741935484, Blast_Score=119, Evalue=2e-28, Organism=Escherichia coli, GI1789378, Length=239, Percent_Identity=33.8912133891213, Blast_Score=108, Evalue=3e-25, Organism=Escherichia coli, GI1788459, Length=245, Percent_Identity=31.0204081632653, Blast_Score=106, Evalue=2e-24, Organism=Escherichia coli, GI1786812, Length=253, Percent_Identity=34.3873517786561, Blast_Score=103, Evalue=1e-23, Organism=Escherichia coli, GI87082160, Length=255, Percent_Identity=30.1960784313725, Blast_Score=102, Evalue=3e-23, Organism=Escherichia coli, GI2367175, Length=255, Percent_Identity=33.3333333333333, Blast_Score=97, Evalue=8e-22, Organism=Escherichia coli, GI1789208, Length=252, Percent_Identity=28.5714285714286, Blast_Score=94, Evalue=7e-21, Organism=Escherichia coli, GI2367365, Length=248, Percent_Identity=33.4677419354839, Blast_Score=94, Evalue=7e-21, Organism=Escherichia coli, GI1790717, Length=247, Percent_Identity=28.3400809716599, Blast_Score=91, Evalue=7e-20, Organism=Escherichia coli, GI1787545, Length=260, Percent_Identity=27.3076923076923, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI1787820, Length=190, Percent_Identity=30, Blast_Score=68, Evalue=7e-13, Organism=Escherichia coli, GI1786701, Length=194, Percent_Identity=31.4432989690722, Blast_Score=62, Evalue=5e-11, Organism=Escherichia coli, GI1789057, Length=259, Percent_Identity=25.8687258687259, Blast_Score=61, Evalue=7e-11, Organism=Caenorhabditis elegans, GI17555706, Length=251, Percent_Identity=37.0517928286853, Blast_Score=137, Evalue=4e-33, Organism=Caenorhabditis elegans, GI17561402, Length=251, Percent_Identity=34.6613545816733, Blast_Score=131, Evalue=3e-31, Organism=Caenorhabditis elegans, GI17560676, Length=249, Percent_Identity=31.3253012048193, Blast_Score=121, Evalue=4e-28, Organism=Caenorhabditis elegans, GI25147288, Length=257, Percent_Identity=35.408560311284, Blast_Score=120, Evalue=6e-28, Organism=Caenorhabditis elegans, GI17560220, Length=264, Percent_Identity=34.8484848484849, Blast_Score=119, Evalue=1e-27, Organism=Caenorhabditis elegans, GI193204405, Length=266, Percent_Identity=33.4586466165414, Blast_Score=117, Evalue=4e-27, Organism=Caenorhabditis elegans, GI71994604, Length=248, Percent_Identity=34.6774193548387, Blast_Score=117, Evalue=6e-27, Organism=Caenorhabditis elegans, GI17562908, Length=260, Percent_Identity=31.9230769230769, Blast_Score=115, Evalue=3e-26, Organism=Caenorhabditis elegans, GI17559104, Length=266, Percent_Identity=33.0827067669173, Blast_Score=112, Evalue=1e-25, Organism=Caenorhabditis elegans, GI17531453, Length=266, Percent_Identity=30.4511278195489, Blast_Score=111, Evalue=3e-25, Organism=Caenorhabditis elegans, GI17560332, Length=267, Percent_Identity=31.8352059925094, Blast_Score=111, Evalue=4e-25, Organism=Caenorhabditis elegans, GI17562904, Length=268, Percent_Identity=30.9701492537313, Blast_Score=110, Evalue=5e-25, Organism=Caenorhabditis elegans, GI71994600, Length=257, Percent_Identity=35.0194552529183, Blast_Score=110, Evalue=6e-25, Organism=Caenorhabditis elegans, GI17562910, Length=266, Percent_Identity=32.3308270676692, Blast_Score=110, Evalue=8e-25, Organism=Caenorhabditis elegans, GI17560150, Length=265, Percent_Identity=29.4339622641509, Blast_Score=109, Evalue=2e-24, Organism=Caenorhabditis elegans, GI17562990, Length=265, Percent_Identity=29.811320754717, Blast_Score=107, Evalue=6e-24, Organism=Caenorhabditis elegans, GI17562906, Length=272, Percent_Identity=29.7794117647059, Blast_Score=102, Evalue=2e-22, Organism=Caenorhabditis elegans, GI17563726, Length=262, Percent_Identity=30.1526717557252, Blast_Score=101, Evalue=3e-22, Organism=Caenorhabditis elegans, GI72000259, Length=266, Percent_Identity=28.1954887218045, Blast_Score=95, Evalue=3e-20, Organism=Caenorhabditis elegans, GI17565030, Length=275, Percent_Identity=32, Blast_Score=94, Evalue=8e-20, Organism=Caenorhabditis elegans, GI17544670, Length=273, Percent_Identity=27.4725274725275, Blast_Score=91, Evalue=6e-19, Organism=Caenorhabditis elegans, GI17538486, Length=265, Percent_Identity=29.0566037735849, Blast_Score=91, Evalue=7e-19, Organism=Caenorhabditis elegans, GI17568967, Length=228, Percent_Identity=33.3333333333333, Blast_Score=90, Evalue=9e-19, Organism=Caenorhabditis elegans, GI115534694, Length=252, Percent_Identity=31.3492063492063, Blast_Score=89, Evalue=3e-18, Organism=Caenorhabditis elegans, GI17551412, Length=265, Percent_Identity=28.6792452830189, Blast_Score=89, Evalue=3e-18, Organism=Caenorhabditis elegans, GI17538480, Length=259, Percent_Identity=29.3436293436293, Blast_Score=84, Evalue=5e-17, Organism=Caenorhabditis elegans, GI17536025, Length=254, Percent_Identity=29.1338582677165, Blast_Score=80, Evalue=1e-15, Organism=Caenorhabditis elegans, GI17536651, Length=256, Percent_Identity=30.46875, Blast_Score=79, Evalue=3e-15, Organism=Caenorhabditis elegans, GI17561272, Length=261, Percent_Identity=29.8850574712644, Blast_Score=75, Evalue=4e-14, Organism=Caenorhabditis elegans, GI17508651, Length=252, Percent_Identity=27.3809523809524, Blast_Score=74, Evalue=9e-14, Organism=Caenorhabditis elegans, GI193203115, Length=187, Percent_Identity=28.8770053475936, Blast_Score=72, Evalue=4e-13, Organism=Caenorhabditis elegans, GI193203117, Length=187, Percent_Identity=28.8770053475936, Blast_Score=71, Evalue=4e-13, Organism=Caenorhabditis elegans, GI17538182, Length=227, Percent_Identity=27.7533039647577, Blast_Score=68, Evalue=4e-12, Organism=Caenorhabditis elegans, GI71982365, Length=190, Percent_Identity=32.1052631578947, Blast_Score=68, Evalue=5e-12, Organism=Caenorhabditis elegans, GI71997099, Length=210, Percent_Identity=30.4761904761905, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17508895, Length=172, Percent_Identity=27.906976744186, Blast_Score=64, Evalue=7e-11, Organism=Saccharomyces cerevisiae, GI6322861, Length=255, Percent_Identity=31.3725490196078, Blast_Score=99, Evalue=8e-22, Organism=Saccharomyces cerevisiae, GI6324126, Length=254, Percent_Identity=28.740157480315, Blast_Score=92, Evalue=5e-20, Organism=Drosophila melanogaster, GI24644339, Length=246, Percent_Identity=36.9918699186992, Blast_Score=127, Evalue=9e-30, Organism=Drosophila melanogaster, GI24639444, Length=254, Percent_Identity=36.6141732283465, Blast_Score=122, Evalue=2e-28, Organism=Drosophila melanogaster, GI28571526, Length=252, Percent_Identity=35.7142857142857, Blast_Score=122, Evalue=2e-28, Organism=Drosophila melanogaster, GI21357041, Length=252, Percent_Identity=33.7301587301587, Blast_Score=118, Evalue=4e-27, Organism=Drosophila melanogaster, GI21355319, Length=252, Percent_Identity=30.952380952381, Blast_Score=115, Evalue=3e-26, Organism=Drosophila melanogaster, GI23397609, Length=248, Percent_Identity=34.2741935483871, Blast_Score=111, Evalue=6e-25, Organism=Drosophila melanogaster, GI24644337, Length=249, Percent_Identity=34.5381526104418, Blast_Score=106, Evalue=1e-23, Organism=Drosophila melanogaster, GI18859837, Length=190, Percent_Identity=38.4210526315789, Blast_Score=99, Evalue=3e-21, Organism=Drosophila melanogaster, GI24643142, Length=263, Percent_Identity=28.8973384030418, Blast_Score=87, Evalue=1e-17, Organism=Drosophila melanogaster, GI24641232, Length=242, Percent_Identity=27.6859504132231, Blast_Score=78, Evalue=5e-15, Organism=Drosophila melanogaster, GI17737361, Length=238, Percent_Identity=26.890756302521, Blast_Score=72, Evalue=3e-13, Organism=Drosophila melanogaster, GI21358495, Length=200, Percent_Identity=29.5, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI21357673, Length=190, Percent_Identity=33.1578947368421, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI28571387, Length=241, Percent_Identity=28.6307053941909, Blast_Score=69, Evalue=2e-12, Organism=Drosophila melanogaster, GI24663911, Length=204, Percent_Identity=27.4509803921569, Blast_Score=69, Evalue=4e-12, Organism=Drosophila melanogaster, GI116007234, Length=202, Percent_Identity=28.2178217821782, Blast_Score=66, Evalue=2e-11, Organism=Drosophila melanogaster, GI24580925, Length=193, Percent_Identity=31.0880829015544, Blast_Score=65, Evalue=3e-11, Organism=Drosophila melanogaster, GI116007236, Length=247, Percent_Identity=23.8866396761134, Blast_Score=65, Evalue=3e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: =1.1.1.47 [H]
Molecular weight: Translated: 25989; Mature: 25858
Theoretical pI: Translated: 4.78; Mature: 4.78
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTLLNDKVAIITGASSGIGRAAAKLFAREGAKLVVTGRRQEALDAVVAEIEAEGGQAVAL CCEECCCEEEEECCCCCHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHCCCCCEEEE SGDVRDEALQARLCETAVSRFGGLDIGFNNAGILGEMGPVAEMSPEGWRETIETNLTAAF ECCHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCCCHHHHHHHHHCHHHHH LGAKHQSAAMKNGGGSLIFTSTFVGHTAGMPGMAAYAASKAGLIGFVQVLAAELGRQNIR HCCCHHHHHHHCCCCCEEEEEEHHHHCCCCCCHHHHHHHHCCHHHHHHHHHHHHCCCCEE VNALLPGGTDTPASITNAPDATAEVLAFVEGLHALKRMAQPEEIANAALFLASDMASFVT EEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH GTAMLADGGVSISRT HHHHEECCCEEECCC >Mature Secondary Structure TLLNDKVAIITGASSGIGRAAAKLFAREGAKLVVTGRRQEALDAVVAEIEAEGGQAVAL CEECCCEEEEECCCCCHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHCCCCCEEEE SGDVRDEALQARLCETAVSRFGGLDIGFNNAGILGEMGPVAEMSPEGWRETIETNLTAAF ECCHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCCCHHHHHHHHHCHHHHH LGAKHQSAAMKNGGGSLIFTSTFVGHTAGMPGMAAYAASKAGLIGFVQVLAAELGRQNIR HCCCHHHHHHHCCCCCEEEEEEHHHHCCCCCCHHHHHHHHCCHHHHHHHHHHHHCCCCEE VNALLPGGTDTPASITNAPDATAEVLAFVEGLHALKRMAQPEEIANAALFLASDMASFVT EEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH GTAMLADGGVSISRT HHHHEECCCEEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA