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The map label for this gene is yciR [C]

Identifier: 209549519

GI number: 209549519

Start: 1970139

End: 1972424

Strand: Direct

Name: yciR [C]

Synonym: Rleg2_1925

Alternate gene names: 209549519

Gene position: 1970139-1972424 (Clockwise)

Preceding gene: 209549518

Following gene: 209549520

Centisome position: 43.41

GC content: 63.56

Gene sequence:

>2286_bases
ATGCCCGTGAAGAAAGCCCATCCAGAGGCCGATGATTCCACGGCGGCTGAGGCAGGCGTCGGCAGCGTGGCCGATGACGA
TTCCGACCTGGCGGAACGGGAGAGCCGGTGGAATCATGCGCTCGTCGGCTCCGGCCTCGGCGTCTGGGATCACAACTACC
GTCTCGACCGGAAATATTATTCGCAGACCTGGAAGACCATGCGCGGCATGGCGCCCGACGAGGAGGCCGCCGGCGATTAC
GATGCCTGGCTGGCCCTCGTTCATCCCGATGATCGCGATTTTGTCGTCCATGCCATCGACCGGCAAAATGCCGGCGATCC
GGATTTCCAGATCTTCGAATATCGCGAGCGCCACAGGGACGGCCACTGGATGTGGATCGACTGCCGCGGCGCCTGCGTGG
AATGGGACGAGAGCGGCGTGCCGACGCGCATCGTCGGCACGGATACGGATATTACCGCCCGCAAGGAGGCCGAGGATACG
CTGTCGCGCCTGTCGCGTCGGCTCGACCTGGCGCTGGAGATTTCCCGCATCGGCGTCTTTGAAGCGGATATCGAGAATGA
CACCGTCGAATGGGACGAGCGCCTTATCGCCATCTACGGGCTGAAGGGCGCCTCGCGGCCAATCGCCAGCGATGTCTGGG
CAAAAAGCCTGCATCCCGACGATCGCGAGCGCGTGCTCGGCTTGTCCGACCGCAGCGTCGAAAGCGGCAGTGATTTTCAG
CAGGAATACCGCATCATCCGCGGCGACGGCGCCGAGCGCGTCATTCGCGCCCGCTCGGCCTTCTTTGTCGACGGCAACGG
TCACCGCAAGCTGATCGGCGCCAATTGGGACGTCACCGAGGAGGTCGCGCTCCGCAACGAGCTACAGCGAGCCAAGGATC
TGGCCGAGGCGCACAACCGCGAGCTGGAAGCCGCCAAGGAGAGCATCGAGCGCCTGGCGCTGCACGATTATCTCACCAGC
CTGCCGAACCGCCGCTATCTCGACAAGATGCTGGACGAGCGCTCGGCCGAATGCCGCGCCAAGGGCCTGGGGCTGGCGAT
CCTGCATATCGATCTCGACCGTTTCAAGCAGATCAACGACACGCTCGGCCACCGGGCCGGCGACGCCATGCTGCAGCATG
CCGCAAGCGTGCTCAGAAATTCCGTCCGCGCCGCCGATTTCGTGGCCCGCATCGGCGGTGACGAATTCGTCATCCTCTGC
ACCGTCGATCCCGCCTCGAAGAAGATCGCAAGCCTTGCCGAACGTATCATTCGCGAATTGCGCAAACCGGTCAGATATGA
GGGCCACGACTGCCGTTTCGGGGCCAGCATCGGCATCGCCGTCGACAGCGGGCCGACGCTCGACGCCAAGCAAATGCTGC
TCGATGCCGATATCGCGCTCTATCGCGCCAAGGGCCTGGGCCGCAATCGTTTAGAATTTTTCTCCGCATCCGACCGCCGC
GACGTCATCTCGGCCAAGCACCTTGCCGACGAGATCCTGATCGGCCTCGAGCGCAACGAATTCGTGCCCTTCTATCAGCT
GCAATTCGATGCCCGCACGCTGGATGTCGTCGGCGTCGAAACGCTTGCCCGCTGGCAGCACCCCGTGCACGGGCTGCTGG
CACCAGACCGCTTTCTGGATATCGCCGAGGATCTCGACGTCGTCTCGACCATCGACGCCCTGATCCTGGAGCGCGCCATC
GCCGATCGCCGCGCCTGGATCAAGGACGGGCTGACCGTTCCGAAGATATCGGTCAACGTTTCCGCCCGGCGGCTTGCCGA
TCCCGATCTCGGCAAGAAGCTCCGCGCCCTGAAGATTGCGCCCGGCACCTTCGCCTTCGAATTGCTGGAATCGATCTCGC
TCGACGATTGCGACGAGGCGGTCGCCGCCAACCTGAAAAAGCTGCGCAAGCTCGGCATCGACATTCAAATCGATGATTTC
GGCACCGGCCATGCATCGATCGTCAGCCTGTTGCGCCTGAGCCCGAAGACGCTGAAGATCGACCGCGAGCTGATCCGGCT
GCTGCCGCAATCGGCCGAGCAGCGCAAACTCGTCGGCTCGATCATCGATATCGGCCGCTCGCTGAACATCCTTGTCATCG
CCGAGGGCGTCGAGACTTCAGATCATATCCGCATTCTCGAAGAACTCGACTGCGACACGCTGCAGGGTTATGCGCTCGCC
CGGCCGATGCCGGCCATGCAGATCCCTTCCTTCATCCGCGCCGGCAGCTGGCGCCACGGCCAGGTCGCCGCGCGCGCCCT
GCAGACGCAGCTTCGCCGCGAGCTTCGAAGCAGATCCGCCAAATAA

Upstream 100 bases:

>100_bases
CTGATAGAGGAAACCGGCCCTTCTCGATAATTCAGCAAGTGCTTTCTAAGTCTTTCTTAATGGAATGACAGCAAACTGCG
CCGAGATGAAATAAGCGAGA

Downstream 100 bases:

>100_bases
AAACCTGCACAAGCAGCCCGCCATTTCGCCGTCATTTCACCGTATCGGAAAAGGCGCTAGACTCGTCTTGCGAATTCATT
CGATTCTCTCGGCGGTATTC

Product: PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 761; Mature: 760

Protein sequence:

>761_residues
MPVKKAHPEADDSTAAEAGVGSVADDDSDLAERESRWNHALVGSGLGVWDHNYRLDRKYYSQTWKTMRGMAPDEEAAGDY
DAWLALVHPDDRDFVVHAIDRQNAGDPDFQIFEYRERHRDGHWMWIDCRGACVEWDESGVPTRIVGTDTDITARKEAEDT
LSRLSRRLDLALEISRIGVFEADIENDTVEWDERLIAIYGLKGASRPIASDVWAKSLHPDDRERVLGLSDRSVESGSDFQ
QEYRIIRGDGAERVIRARSAFFVDGNGHRKLIGANWDVTEEVALRNELQRAKDLAEAHNRELEAAKESIERLALHDYLTS
LPNRRYLDKMLDERSAECRAKGLGLAILHIDLDRFKQINDTLGHRAGDAMLQHAASVLRNSVRAADFVARIGGDEFVILC
TVDPASKKIASLAERIIRELRKPVRYEGHDCRFGASIGIAVDSGPTLDAKQMLLDADIALYRAKGLGRNRLEFFSASDRR
DVISAKHLADEILIGLERNEFVPFYQLQFDARTLDVVGVETLARWQHPVHGLLAPDRFLDIAEDLDVVSTIDALILERAI
ADRRAWIKDGLTVPKISVNVSARRLADPDLGKKLRALKIAPGTFAFELLESISLDDCDEAVAANLKKLRKLGIDIQIDDF
GTGHASIVSLLRLSPKTLKIDRELIRLLPQSAEQRKLVGSIIDIGRSLNILVIAEGVETSDHIRILEELDCDTLQGYALA
RPMPAMQIPSFIRAGSWRHGQVAARALQTQLRRELRSRSAK

Sequences:

>Translated_761_residues
MPVKKAHPEADDSTAAEAGVGSVADDDSDLAERESRWNHALVGSGLGVWDHNYRLDRKYYSQTWKTMRGMAPDEEAAGDY
DAWLALVHPDDRDFVVHAIDRQNAGDPDFQIFEYRERHRDGHWMWIDCRGACVEWDESGVPTRIVGTDTDITARKEAEDT
LSRLSRRLDLALEISRIGVFEADIENDTVEWDERLIAIYGLKGASRPIASDVWAKSLHPDDRERVLGLSDRSVESGSDFQ
QEYRIIRGDGAERVIRARSAFFVDGNGHRKLIGANWDVTEEVALRNELQRAKDLAEAHNRELEAAKESIERLALHDYLTS
LPNRRYLDKMLDERSAECRAKGLGLAILHIDLDRFKQINDTLGHRAGDAMLQHAASVLRNSVRAADFVARIGGDEFVILC
TVDPASKKIASLAERIIRELRKPVRYEGHDCRFGASIGIAVDSGPTLDAKQMLLDADIALYRAKGLGRNRLEFFSASDRR
DVISAKHLADEILIGLERNEFVPFYQLQFDARTLDVVGVETLARWQHPVHGLLAPDRFLDIAEDLDVVSTIDALILERAI
ADRRAWIKDGLTVPKISVNVSARRLADPDLGKKLRALKIAPGTFAFELLESISLDDCDEAVAANLKKLRKLGIDIQIDDF
GTGHASIVSLLRLSPKTLKIDRELIRLLPQSAEQRKLVGSIIDIGRSLNILVIAEGVETSDHIRILEELDCDTLQGYALA
RPMPAMQIPSFIRAGSWRHGQVAARALQTQLRRELRSRSAK
>Mature_760_residues
PVKKAHPEADDSTAAEAGVGSVADDDSDLAERESRWNHALVGSGLGVWDHNYRLDRKYYSQTWKTMRGMAPDEEAAGDYD
AWLALVHPDDRDFVVHAIDRQNAGDPDFQIFEYRERHRDGHWMWIDCRGACVEWDESGVPTRIVGTDTDITARKEAEDTL
SRLSRRLDLALEISRIGVFEADIENDTVEWDERLIAIYGLKGASRPIASDVWAKSLHPDDRERVLGLSDRSVESGSDFQQ
EYRIIRGDGAERVIRARSAFFVDGNGHRKLIGANWDVTEEVALRNELQRAKDLAEAHNRELEAAKESIERLALHDYLTSL
PNRRYLDKMLDERSAECRAKGLGLAILHIDLDRFKQINDTLGHRAGDAMLQHAASVLRNSVRAADFVARIGGDEFVILCT
VDPASKKIASLAERIIRELRKPVRYEGHDCRFGASIGIAVDSGPTLDAKQMLLDADIALYRAKGLGRNRLEFFSASDRRD
VISAKHLADEILIGLERNEFVPFYQLQFDARTLDVVGVETLARWQHPVHGLLAPDRFLDIAEDLDVVSTIDALILERAIA
DRRAWIKDGLTVPKISVNVSARRLADPDLGKKLRALKIAPGTFAFELLESISLDDCDEAVAANLKKLRKLGIDIQIDDFG
TGHASIVSLLRLSPKTLKIDRELIRLLPQSAEQRKLVGSIIDIGRSLNILVIAEGVETSDHIRILEELDCDTLQGYALAR
PMPAMQIPSFIRAGSWRHGQVAARALQTQLRRELRSRSAK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=498, Percent_Identity=28.9156626506024, Blast_Score=204, Evalue=2e-53,
Organism=Escherichia coli, GI87081921, Length=454, Percent_Identity=28.1938325991189, Blast_Score=194, Evalue=2e-50,
Organism=Escherichia coli, GI226510982, Length=435, Percent_Identity=28.5057471264368, Blast_Score=139, Evalue=6e-34,
Organism=Escherichia coli, GI1788502, Length=237, Percent_Identity=32.4894514767932, Blast_Score=122, Evalue=9e-29,
Organism=Escherichia coli, GI1787055, Length=239, Percent_Identity=30.9623430962343, Blast_Score=115, Evalue=1e-26,
Organism=Escherichia coli, GI87081980, Length=249, Percent_Identity=31.7269076305221, Blast_Score=114, Evalue=3e-26,
Organism=Escherichia coli, GI145693134, Length=203, Percent_Identity=36.4532019704434, Blast_Score=108, Evalue=2e-24,
Organism=Escherichia coli, GI1788381, Length=463, Percent_Identity=26.133909287257, Blast_Score=99, Evalue=7e-22,
Organism=Escherichia coli, GI1786507, Length=286, Percent_Identity=27.972027972028, Blast_Score=95, Evalue=1e-20,
Organism=Escherichia coli, GI87082007, Length=171, Percent_Identity=35.672514619883, Blast_Score=93, Evalue=6e-20,
Organism=Escherichia coli, GI1786584, Length=186, Percent_Identity=33.3333333333333, Blast_Score=93, Evalue=6e-20,
Organism=Escherichia coli, GI87081845, Length=239, Percent_Identity=27.1966527196653, Blast_Score=92, Evalue=1e-19,
Organism=Escherichia coli, GI1788849, Length=200, Percent_Identity=30.5, Blast_Score=91, Evalue=2e-19,
Organism=Escherichia coli, GI87082096, Length=215, Percent_Identity=30.2325581395349, Blast_Score=91, Evalue=2e-19,
Organism=Escherichia coli, GI1790496, Length=237, Percent_Identity=27.4261603375527, Blast_Score=91, Evalue=2e-19,
Organism=Escherichia coli, GI87081881, Length=166, Percent_Identity=39.1566265060241, Blast_Score=87, Evalue=4e-18,
Organism=Escherichia coli, GI87081743, Length=236, Percent_Identity=27.1186440677966, Blast_Score=87, Evalue=5e-18,
Organism=Escherichia coli, GI87081977, Length=170, Percent_Identity=34.7058823529412, Blast_Score=86, Evalue=1e-17,
Organism=Escherichia coli, GI1787262, Length=169, Percent_Identity=34.3195266272189, Blast_Score=84, Evalue=4e-17,
Organism=Escherichia coli, GI87081974, Length=115, Percent_Identity=37.3913043478261, Blast_Score=83, Evalue=6e-17,
Organism=Escherichia coli, GI1787816, Length=177, Percent_Identity=36.1581920903955, Blast_Score=79, Evalue=1e-15,
Organism=Escherichia coli, GI1788085, Length=204, Percent_Identity=29.4117647058824, Blast_Score=77, Evalue=5e-15,
Organism=Escherichia coli, GI1787802, Length=208, Percent_Identity=26.9230769230769, Blast_Score=70, Evalue=4e-13,
Organism=Escherichia coli, GI1787410, Length=151, Percent_Identity=32.4503311258278, Blast_Score=66, Evalue=9e-12,
Organism=Escherichia coli, GI1787056, Length=164, Percent_Identity=31.0975609756098, Blast_Score=65, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 85311; Mature: 85179

Theoretical pI: Translated: 5.66; Mature: 5.66

Prosite motif: PS50113 PAC ; PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPVKKAHPEADDSTAAEAGVGSVADDDSDLAERESRWNHALVGSGLGVWDHNYRLDRKYY
CCCCCCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHCCEEECCCCCCCCCCCCEECHHHH
SQTWKTMRGMAPDEEAAGDYDAWLALVHPDDRDFVVHAIDRQNAGDPDFQIFEYRERHRD
HHHHHHHHCCCCCHHCCCCCCCEEEEECCCCCCEEEEEECCCCCCCCCHHHHHHHHHCCC
GHWMWIDCRGACVEWDESGVPTRIVGTDTDITARKEAEDTLSRLSRRLDLALEISRIGVF
CCEEEEECCCCEEEECCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHEEHHHCEEE
EADIENDTVEWDERLIAIYGLKGASRPIASDVWAKSLHPDDRERVLGLSDRSVESGSDFQ
EECCCCCCCCCCCEEEEEEECCCCCCCCHHHHHHHCCCCCCHHHEECCCCCCCCCCCCHH
QEYRIIRGDGAERVIRARSAFFVDGNGHRKLIGANWDVTEEVALRNELQRAKDLAEAHNR
HHHHEECCCCHHHHHHHHHEEEECCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCH
ELEAAKESIERLALHDYLTSLPNRRYLDKMLDERSAECRAKGLGLAILHIDLDRFKQIND
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHH
TLGHRAGDAMLQHAASVLRNSVRAADFVARIGGDEFVILCTVDPASKKIASLAERIIREL
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHHHH
RKPVRYEGHDCRFGASIGIAVDSGPTLDAKQMLLDADIALYRAKGLGRNRLEFFSASDRR
HHHHCCCCCCEEECCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCH
DVISAKHLADEILIGLERNEFVPFYQLQFDARTLDVVGVETLARWQHPVHGLLAPDRFLD
HHHHHHHHHHHHHEECCCCCCCCEEEEEECCCEEEHHHHHHHHHHCCCCCCCCCCHHHHH
IAEDLDVVSTIDALILERAIADRRAWIKDGLTVPKISVNVSARRLADPDLGKKLRALKIA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHCCCCCHHCHHHEEEEC
PGTFAFELLESISLDDCDEAVAANLKKLRKLGIDIQIDDFGTGHASIVSLLRLSPKTLKI
CCHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHCCCHHHHH
DRELIRLLPQSAEQRKLVGSIIDIGRSLNILVIAEGVETSDHIRILEELDCDTLQGYALA
HHHHHHHCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHCCCCHHCCCHHC
RPMPAMQIPSFIRAGSWRHGQVAARALQTQLRRELRSRSAK
CCCCCHHCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
PVKKAHPEADDSTAAEAGVGSVADDDSDLAERESRWNHALVGSGLGVWDHNYRLDRKYY
CCCCCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHCCEEECCCCCCCCCCCCEECHHHH
SQTWKTMRGMAPDEEAAGDYDAWLALVHPDDRDFVVHAIDRQNAGDPDFQIFEYRERHRD
HHHHHHHHCCCCCHHCCCCCCCEEEEECCCCCCEEEEEECCCCCCCCCHHHHHHHHHCCC
GHWMWIDCRGACVEWDESGVPTRIVGTDTDITARKEAEDTLSRLSRRLDLALEISRIGVF
CCEEEEECCCCEEEECCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHEEHHHCEEE
EADIENDTVEWDERLIAIYGLKGASRPIASDVWAKSLHPDDRERVLGLSDRSVESGSDFQ
EECCCCCCCCCCCEEEEEEECCCCCCCCHHHHHHHCCCCCCHHHEECCCCCCCCCCCCHH
QEYRIIRGDGAERVIRARSAFFVDGNGHRKLIGANWDVTEEVALRNELQRAKDLAEAHNR
HHHHEECCCCHHHHHHHHHEEEECCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCH
ELEAAKESIERLALHDYLTSLPNRRYLDKMLDERSAECRAKGLGLAILHIDLDRFKQIND
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHH
TLGHRAGDAMLQHAASVLRNSVRAADFVARIGGDEFVILCTVDPASKKIASLAERIIREL
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHHHH
RKPVRYEGHDCRFGASIGIAVDSGPTLDAKQMLLDADIALYRAKGLGRNRLEFFSASDRR
HHHHCCCCCCEEECCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCH
DVISAKHLADEILIGLERNEFVPFYQLQFDARTLDVVGVETLARWQHPVHGLLAPDRFLD
HHHHHHHHHHHHHEECCCCCCCCEEEEEECCCEEEHHHHHHHHHHCCCCCCCCCCHHHHH
IAEDLDVVSTIDALILERAIADRRAWIKDGLTVPKISVNVSARRLADPDLGKKLRALKIA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHCCCCCHHCHHHEEEEC
PGTFAFELLESISLDDCDEAVAANLKKLRKLGIDIQIDDFGTGHASIVSLLRLSPKTLKI
CCHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHCCCHHHHH
DRELIRLLPQSAEQRKLVGSIIDIGRSLNILVIAEGVETSDHIRILEELDCDTLQGYALA
HHHHHHHCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHCCCCHHCCCHHC
RPMPAMQIPSFIRAGSWRHGQVAARALQTQLRRELRSRSAK
CCCCCHHCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]