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The map label for this gene is ddpC [H]

Identifier: 209549291

GI number: 209549291

Start: 1724878

End: 1725780

Strand: Direct

Name: ddpC [H]

Synonym: Rleg2_1694

Alternate gene names: 209549291

Gene position: 1724878-1725780 (Clockwise)

Preceding gene: 209549290

Following gene: 209549292

Centisome position: 38.01

GC content: 64.34

Gene sequence:

>903_bases
ATGAGCGACGCCGTCCGCATTGACATTCGAATCCGCCCGCCAAGTGTCTCGACCCGCGTCGCGGCGTCGTTTGCGCGCGC
CGGCCGCAAATTGGCTGCCGAGCCGCTTGGCCTTGCCGGCTTCGTCATCCTCGGCCTGCTGTGCCTGATCGCGATCTTCG
CGCCGCTTCTGGCGCCTTATGATCCGGTCGTGCAGTCACTCGGCGATGCCTTGCAGGCCCCGAGCCTGGCGCATTGGGCC
GGCACCGACGAATTCGGCCGGGACATTTTAAGCCGGCTGATCTTCGGCACGCGCATCACCATCCAGACCGTGCTGTCGAT
CTCGCTGATCGTCGGGCCAATCGGCCTGCTGATCGGCGTCGTTGCCGGCTTTTTCGGCGGGCGCACCGATGCGCTGCTGA
TGCGCGCCACCGATATCGTTCTGTCTTTCCCATCGCTGATCCTGGCGCTGGCTTTTGCGGCCGCACTCGGCGCCGGCCTG
ACCACGGCAATCATCGCGATCTCGCTGACCGCATGGCCGCCGATTGCCAGGCTTGCGCGCGCCGAGGCGCTTGTCGTTAG
AAACGCCGATTATGTGGTCGCCGCCCGCCTTTACGGCGCCTCGCCGATCCGCATCCTTCTTCTCTATATCGCGCCGATGT
GCGTACCTTCGGTCATCGTTCGCCTGACCCTCAATATGGCCGGCATTATCCTGACGGCGGCTTCCCTCGGCTTTCTCGGC
CTCGGCGCCCAGCCGCCGGCGCCGGAATGGGGGGCGATGATTTCCAACGGCCGTAAGTTCATGCTGGATTATTGGTGGGT
CGCCGTCATGCCGGGTATCGCCATCCTTCTCACCAGCCTTGCCTTCAACATCGCCGGAGATGCTCTGCGCGACATTCTGG
ATCCCCGCCATGCCAGATCGTGA

Upstream 100 bases:

>100_bases
TGGCTGGCACCATCATCGTGGGATTCATCTTCATGCTGTTAAACTTCCTCGCCGACGTCGCTTACGCCGTCTTCGATCCG
CGTATGCGGGAGGCGGCCCG

Downstream 100 bases:

>100_bases
AATCAATGATCGTGATCTTCAACCCGTTCTCTCCGTCAAAGGATTGACCGTCCGCTTCGGCCGCGGCGCCGTGCCCGCCG
TTTCCAATGTCAGTTTCGAC

Product: binding-protein-dependent transporters inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 300; Mature: 299

Protein sequence:

>300_residues
MSDAVRIDIRIRPPSVSTRVAASFARAGRKLAAEPLGLAGFVILGLLCLIAIFAPLLAPYDPVVQSLGDALQAPSLAHWA
GTDEFGRDILSRLIFGTRITIQTVLSISLIVGPIGLLIGVVAGFFGGRTDALLMRATDIVLSFPSLILALAFAAALGAGL
TTAIIAISLTAWPPIARLARAEALVVRNADYVVAARLYGASPIRILLLYIAPMCVPSVIVRLTLNMAGIILTAASLGFLG
LGAQPPAPEWGAMISNGRKFMLDYWWVAVMPGIAILLTSLAFNIAGDALRDILDPRHARS

Sequences:

>Translated_300_residues
MSDAVRIDIRIRPPSVSTRVAASFARAGRKLAAEPLGLAGFVILGLLCLIAIFAPLLAPYDPVVQSLGDALQAPSLAHWA
GTDEFGRDILSRLIFGTRITIQTVLSISLIVGPIGLLIGVVAGFFGGRTDALLMRATDIVLSFPSLILALAFAAALGAGL
TTAIIAISLTAWPPIARLARAEALVVRNADYVVAARLYGASPIRILLLYIAPMCVPSVIVRLTLNMAGIILTAASLGFLG
LGAQPPAPEWGAMISNGRKFMLDYWWVAVMPGIAILLTSLAFNIAGDALRDILDPRHARS
>Mature_299_residues
SDAVRIDIRIRPPSVSTRVAASFARAGRKLAAEPLGLAGFVILGLLCLIAIFAPLLAPYDPVVQSLGDALQAPSLAHWAG
TDEFGRDILSRLIFGTRITIQTVLSISLIVGPIGLLIGVVAGFFGGRTDALLMRATDIVLSFPSLILALAFAAALGAGLT
TAIIAISLTAWPPIARLARAEALVVRNADYVVAARLYGASPIRILLLYIAPMCVPSVIVRLTLNMAGIILTAASLGFLGL
GAQPPAPEWGAMISNGRKFMLDYWWVAVMPGIAILLTSLAFNIAGDALRDILDPRHARS

Specific function: Part of the ABC transporter complex ddpABCDF, which is probably involved in D,D-dipeptide transport. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787760, Length=283, Percent_Identity=46.643109540636, Blast_Score=242, Evalue=2e-65,
Organism=Escherichia coli, GI1787054, Length=287, Percent_Identity=43.205574912892, Blast_Score=210, Evalue=9e-56,
Organism=Escherichia coli, GI1789964, Length=255, Percent_Identity=46.2745098039216, Blast_Score=201, Evalue=5e-53,
Organism=Escherichia coli, GI1789889, Length=242, Percent_Identity=41.3223140495868, Blast_Score=186, Evalue=2e-48,
Organism=Escherichia coli, GI1787549, Length=285, Percent_Identity=33.6842105263158, Blast_Score=137, Evalue=7e-34,
Organism=Escherichia coli, GI1787498, Length=272, Percent_Identity=31.25, Blast_Score=137, Evalue=1e-33,
Organism=Escherichia coli, GI1788505, Length=226, Percent_Identity=30.9734513274336, Blast_Score=106, Evalue=2e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 31596; Mature: 31465

Theoretical pI: Translated: 10.14; Mature: 10.14

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDAVRIDIRIRPPSVSTRVAASFARAGRKLAAEPLGLAGFVILGLLCLIAIFAPLLAPY
CCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCH
DPVVQSLGDALQAPSLAHWAGTDEFGRDILSRLIFGTRITIQTVLSISLIVGPIGLLIGV
HHHHHHHHHHHCCCCCHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
VAGFFGGRTDALLMRATDIVLSFPSLILALAFAAALGAGLTTAIIAISLTAWPPIARLAR
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHH
AEALVVRNADYVVAARLYGASPIRILLLYIAPMCVPSVIVRLTLNMAGIILTAASLGFLG
HHHHEEECCCCEEEHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
LGAQPPAPEWGAMISNGRKFMLDYWWVAVMPGIAILLTSLAFNIAGDALRDILDPRHARS
CCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
SDAVRIDIRIRPPSVSTRVAASFARAGRKLAAEPLGLAGFVILGLLCLIAIFAPLLAPY
CCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCH
DPVVQSLGDALQAPSLAHWAGTDEFGRDILSRLIFGTRITIQTVLSISLIVGPIGLLIGV
HHHHHHHHHHHCCCCCHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
VAGFFGGRTDALLMRATDIVLSFPSLILALAFAAALGAGLTTAIIAISLTAWPPIARLAR
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHH
AEALVVRNADYVVAARLYGASPIRILLLYIAPMCVPSVIVRLTLNMAGIILTAASLGFLG
HHHHEEECCCCEEEHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
LGAQPPAPEWGAMISNGRKFMLDYWWVAVMPGIAILLTSLAFNIAGDALRDILDPRHARS
CCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 9751644 [H]