BacMap

Definition	Rhizobium leguminosarum bv. trifolii WSM2304 chromosome, complete genome.
Accession	NC_011369
Length	4,537,948

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The map label for this gene is dppD [H]

Identifier: 209549292

GI number: 209549292

Start: 1725767

End: 1726627

Strand: Direct

Name: dppD [H]

Synonym: Rleg2_1695

Alternate gene names: 209549292

Gene position: 1725767-1726627 (Clockwise)

Preceding gene: 209549291

Following gene: 209549293

Centisome position: 38.03

GC content: 63.07

Gene sequence:

>861_bases
ATGCCAGATCGTGAAATCAATGATCGTGATCTTCAACCCGTTCTCTCCGTCAAAGGATTGACCGTCCGCTTCGGCCGCGG
CGCCGTGCCCGCCGTTTCCAATGTCAGTTTCGACGTCGGGCGCGAACGGGTCGGCATCGTCGGAGAATCCGGCTCCGGCA
AATCGACGACGGGGCGCGCCATCATGCGCCTGCTGACGCCGGCAGCGGTGGTCTCCGCCGAACGCCTGGATCTCGGCGGC
GATCCCTTGCTGTCGAAGAGCGAGCGGCAGATGGGCGCGCTTCGTGGCAAGGACATCGCGCTGATCATGCAGGATCCGCG
TTATTCGCTGAATCCTGTGCTCTCGATCGGCAAGCAGATCGCCGAAGCTGCGCGTCTTCACCTCGGTCTCGGCAAGAGCC
AGGCGCTTGACGCCGCTCGCGCCATGCTGGAGCGCGTGCGCATCAGCGATCCGGACCGGGTCATGGCGCTTTATCCCCAC
CAGATATCGGGCGGCATGGGCCAGCGTGTGATGATCGCCATGATGCTGCTGGCGCGGCCGAAGCTGGTCATTGCCGACGA
ACCGACTTCGGCGCTCGATGTCAGCGTCCGCAAGGACGTGCTGCTGTTGCTCGATGAACTGGTGCGCGAGAACAATTCCG
GCCTGCTGTTGATCAGCCACGATATTCGCATGGTGGCGGCCTTCTGCGAGCGCATCATCGTCATGTATGCCGGCCGCATC
GTCGAAACCCTGACCAGTCTCGAAGAGGCCCGCCATCCCTATACCCGTGGGTTGATAGCAGCATTGCCCGACCCGAAGAA
CCCGGTTCGCCGGCTGGCCGTTCTCGACCGGGCCAAACTCGATCTGGAGACGGCGCAATGA

Upstream 100 bases:

>100_bases
TATTGGTGGGTCGCCGTCATGCCGGGTATCGCCATCCTTCTCACCAGCCTTGCCTTCAACATCGCCGGAGATGCTCTGCG
CGACATTCTGGATCCCCGCC

Downstream 100 bases:

>100_bases
TCAATGTCCGCGACCTCGATGTCGTCTTTGCCTCGGGCAAATCAAGCAATCATGTCGTCAGGGGCATCAGTTTTCAGGTC
AACCAGGGCGAGACGCTGGG

Product: ABC transporter

Products: ADP; phosphate; dipeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 286; Mature: 285

Protein sequence:

>286_residues
MPDREINDRDLQPVLSVKGLTVRFGRGAVPAVSNVSFDVGRERVGIVGESGSGKSTTGRAIMRLLTPAAVVSAERLDLGG
DPLLSKSERQMGALRGKDIALIMQDPRYSLNPVLSIGKQIAEAARLHLGLGKSQALDAARAMLERVRISDPDRVMALYPH
QISGGMGQRVMIAMMLLARPKLVIADEPTSALDVSVRKDVLLLLDELVRENNSGLLLISHDIRMVAAFCERIIVMYAGRI
VETLTSLEEARHPYTRGLIAALPDPKNPVRRLAVLDRAKLDLETAQ

Sequences:

>Translated_286_residues
MPDREINDRDLQPVLSVKGLTVRFGRGAVPAVSNVSFDVGRERVGIVGESGSGKSTTGRAIMRLLTPAAVVSAERLDLGG
DPLLSKSERQMGALRGKDIALIMQDPRYSLNPVLSIGKQIAEAARLHLGLGKSQALDAARAMLERVRISDPDRVMALYPH
QISGGMGQRVMIAMMLLARPKLVIADEPTSALDVSVRKDVLLLLDELVRENNSGLLLISHDIRMVAAFCERIIVMYAGRI
VETLTSLEEARHPYTRGLIAALPDPKNPVRRLAVLDRAKLDLETAQ
>Mature_285_residues
PDREINDRDLQPVLSVKGLTVRFGRGAVPAVSNVSFDVGRERVGIVGESGSGKSTTGRAIMRLLTPAAVVSAERLDLGGD
PLLSKSERQMGALRGKDIALIMQDPRYSLNPVLSIGKQIAEAARLHLGLGKSQALDAARAMLERVRISDPDRVMALYPHQ
ISGGMGQRVMIAMMLLARPKLVIADEPTSALDVSVRKDVLLLLDELVRENNSGLLLISHDIRMVAAFCERIIVMYAGRIV
ETLTSLEEARHPYTRGLIAALPDPKNPVRRLAVLDRAKLDLETAQ

Specific function: Part of the binding-protein-dependent transport system for dipeptides. Probably responsible for energy coupling to the transport system [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI27477115, Length=212, Percent_Identity=25, Blast_Score=68, Evalue=8e-12,
Organism=Homo sapiens, GI27881501, Length=242, Percent_Identity=23.1404958677686, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI30795238, Length=242, Percent_Identity=23.1404958677686, Blast_Score=66, Evalue=3e-11,
Organism=Escherichia coli, GI1789963, Length=268, Percent_Identity=47.0149253731343, Blast_Score=219, Evalue=1e-58,
Organism=Escherichia coli, GI48994883, Length=256, Percent_Identity=43.359375, Blast_Score=210, Evalue=9e-56,
Organism=Escherichia coli, GI145693107, Length=270, Percent_Identity=44.0740740740741, Blast_Score=209, Evalue=2e-55,
Organism=Escherichia coli, GI1787759, Length=264, Percent_Identity=42.8030303030303, Blast_Score=197, Evalue=8e-52,
Organism=Escherichia coli, GI1788506, Length=263, Percent_Identity=41.4448669201521, Blast_Score=177, Evalue=9e-46,
Organism=Escherichia coli, GI1787548, Length=267, Percent_Identity=34.8314606741573, Blast_Score=155, Evalue=3e-39,
Organism=Escherichia coli, GI1787500, Length=254, Percent_Identity=38.5826771653543, Blast_Score=149, Evalue=2e-37,
Organism=Escherichia coli, GI1789962, Length=241, Percent_Identity=40.2489626556017, Blast_Score=146, Evalue=2e-36,
Organism=Escherichia coli, GI1789890, Length=240, Percent_Identity=37.5, Blast_Score=133, Evalue=1e-32,
Organism=Escherichia coli, GI1789891, Length=269, Percent_Identity=34.9442379182156, Blast_Score=124, Evalue=7e-30,
Organism=Escherichia coli, GI1787758, Length=258, Percent_Identity=34.1085271317829, Blast_Score=123, Evalue=2e-29,
Organism=Escherichia coli, GI48994997, Length=258, Percent_Identity=37.2093023255814, Blast_Score=117, Evalue=1e-27,
Organism=Escherichia coli, GI1787547, Length=249, Percent_Identity=30.9236947791165, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI1787089, Length=233, Percent_Identity=30.4721030042918, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI1789672, Length=248, Percent_Identity=32.6612903225806, Blast_Score=94, Evalue=8e-21,
Organism=Escherichia coli, GI1786703, Length=234, Percent_Identity=30.3418803418803, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI1786398, Length=248, Percent_Identity=29.4354838709677, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1788225, Length=202, Percent_Identity=32.1782178217822, Blast_Score=89, Evalue=4e-19,
Organism=Escherichia coli, GI87081834, Length=235, Percent_Identity=31.4893617021277, Blast_Score=89, Evalue=4e-19,
Organism=Escherichia coli, GI1787105, Length=242, Percent_Identity=31.404958677686, Blast_Score=89, Evalue=5e-19,
Organism=Escherichia coli, GI1787029, Length=230, Percent_Identity=30.4347826086957, Blast_Score=85, Evalue=5e-18,
Organism=Escherichia coli, GI87081709, Length=252, Percent_Identity=26.984126984127, Blast_Score=85, Evalue=6e-18,
Organism=Escherichia coli, GI1787370, Length=256, Percent_Identity=26.171875, Blast_Score=81, Evalue=8e-17,
Organism=Escherichia coli, GI1789864, Length=245, Percent_Identity=28.1632653061224, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI48994943, Length=235, Percent_Identity=28.0851063829787, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI1790162, Length=230, Percent_Identity=27.3913043478261, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1787712, Length=241, Percent_Identity=29.4605809128631, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1789991, Length=227, Percent_Identity=28.6343612334802, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI87081791, Length=250, Percent_Identity=28, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1789032, Length=241, Percent_Identity=30.7053941908714, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1790739, Length=232, Percent_Identity=27.1551724137931, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI1786563, Length=226, Percent_Identity=30.9734513274336, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1786803, Length=231, Percent_Identity=25.1082251082251, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1788644, Length=195, Percent_Identity=30.2564102564103, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1786872, Length=196, Percent_Identity=31.1224489795918, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1786345, Length=227, Percent_Identity=29.0748898678414, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1788165, Length=223, Percent_Identity=28.6995515695067, Blast_Score=71, Evalue=6e-14,
Organism=Escherichia coli, GI87082267, Length=230, Percent_Identity=27.8260869565217, Blast_Score=71, Evalue=6e-14,
Organism=Escherichia coli, GI1790467, Length=282, Percent_Identity=26.5957446808511, Blast_Score=71, Evalue=7e-14,
Organism=Escherichia coli, GI1788450, Length=250, Percent_Identity=29.2, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1788761, Length=250, Percent_Identity=26, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1786319, Length=272, Percent_Identity=26.8382352941176, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1786253, Length=201, Percent_Identity=30.8457711442786, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI87081782, Length=241, Percent_Identity=28.2157676348548, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1787792, Length=241, Percent_Identity=29.8755186721992, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1787164, Length=202, Percent_Identity=33.6633663366337, Blast_Score=68, Evalue=8e-13,
Organism=Escherichia coli, GI1789873, Length=218, Percent_Identity=27.0642201834862, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1790525, Length=244, Percent_Identity=25.8196721311475, Blast_Score=64, Evalue=8e-12,
Organism=Escherichia coli, GI1788210, Length=244, Percent_Identity=26.6393442622951, Blast_Score=64, Evalue=9e-12,
Organism=Escherichia coli, GI1790190, Length=223, Percent_Identity=27.8026905829596, Blast_Score=63, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI71983510, Length=237, Percent_Identity=29.1139240506329, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI71983516, Length=237, Percent_Identity=29.1139240506329, Blast_Score=73, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI71983523, Length=237, Percent_Identity=29.1139240506329, Blast_Score=73, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI25146777, Length=241, Percent_Identity=27.3858921161826, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI212646699, Length=245, Percent_Identity=27.3469387755102, Blast_Score=72, Evalue=3e-13,
Organism=Saccharomyces cerevisiae, GI6321752, Length=244, Percent_Identity=30.7377049180328, Blast_Score=80, Evalue=3e-16,
Organism=Drosophila melanogaster, GI28574533, Length=250, Percent_Identity=29.2, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI116007184, Length=217, Percent_Identity=27.1889400921659, Blast_Score=72, Evalue=4e-13,
Organism=Drosophila melanogaster, GI221500365, Length=217, Percent_Identity=27.1889400921659, Blast_Score=72, Evalue=4e-13,
Organism=Drosophila melanogaster, GI24641565, Length=205, Percent_Identity=32.1951219512195, Blast_Score=68, Evalue=9e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593
- InterPro:   IPR010066
- InterPro:   IPR013563 [H]

Pfam domain/function: PF00005 ABC_tran; PF08352 oligo_HPY [H]

EC number: NA

Molecular weight: Translated: 31136; Mature: 31005

Theoretical pI: Translated: 9.97; Mature: 9.97

Prosite motif: PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPDREINDRDLQPVLSVKGLTVRFGRGAVPAVSNVSFDVGRERVGIVGESGSGKSTTGRA
CCCCCCCCCCCCHHHHCCCEEEEECCCCCCCCCCCCHHCCCCEEEEEECCCCCCCHHHHH
IMRLLTPAAVVSAERLDLGGDPLLSKSERQMGALRGKDIALIMQDPRYSLNPVLSIGKQI
HHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHH
AEAARLHLGLGKSQALDAARAMLERVRISDPDRVMALYPHQISGGMGQRVMIAMMLLARP
HHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCEEEECCHHHCCCCCHHHHHHHHHHHCC
KLVIADEPTSALDVSVRKDVLLLLDELVRENNSGLLLISHDIRMVAAFCERIIVMYAGRI
CEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHHHHHHH
VETLTSLEEARHPYTRGLIAALPDPKNPVRRLAVLDRAKLDLETAQ
HHHHHHHHHHCCCHHHCEEEECCCCCHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
PDREINDRDLQPVLSVKGLTVRFGRGAVPAVSNVSFDVGRERVGIVGESGSGKSTTGRA
CCCCCCCCCCCHHHHCCCEEEEECCCCCCCCCCCCHHCCCCEEEEEECCCCCCCHHHHH
IMRLLTPAAVVSAERLDLGGDPLLSKSERQMGALRGKDIALIMQDPRYSLNPVLSIGKQI
HHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHH
AEAARLHLGLGKSQALDAARAMLERVRISDPDRVMALYPHQISGGMGQRVMIAMMLLARP
HHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCEEEECCHHHCCCCCHHHHHHHHHHHCC
KLVIADEPTSALDVSVRKDVLLLLDELVRENNSGLLLISHDIRMVAAFCERIIVMYAGRI
CEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHHHHHHH
VETLTSLEEARHPYTRGLIAALPDPKNPVRRLAVLDRAKLDLETAQ
HHHHHHHHHHCCCHHHCEEEECCCCCHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; dipeptides [Periplasm]; H2O [C]

Specific reaction: ATP + dipeptides [Periplasm] + H2O = ADP + phosphate + dipeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]