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The map label for this gene is rarA [H]

Identifier: 209548968

GI number: 209548968

Start: 1384083

End: 1385399

Strand: Direct

Name: rarA [H]

Synonym: Rleg2_1365

Alternate gene names: 209548968

Gene position: 1384083-1385399 (Clockwise)

Preceding gene: 209548967

Following gene: 209548970

Centisome position: 30.5

GC content: 63.71

Gene sequence:

>1317_bases
ATGAGCAATGATCTCTTCGCGCCGCGCGTTCCGGAGGAGGTTGCCGCCAGGCGGCCGCTTGCCGACCGGCTGCGGCCGAA
GACGCTTGCCGATGTCACCGGTCAGGAACATCTGACCGGTGAAGACGGCGTGCTGAAAAGGATGATCGAAAGCGATTCGC
TCGGCTCGATGATCTTCTGGGGTCCGCCCGGCACCGGCAAGACCACGGTGGCGCGGCTGCTGTCGGGCGAGGCGGGGCTG
GCTTTCGAGCAGATTTCAGCGATCTTTTCCGGTGTCGCCGATCTGAAGAAGATGTTCGAAACGGCCCGCCTGCGCCGCAT
GGACGGCCGCCAGACGCTGCTCTTCGTCGACGAGATCCACCGTTTCAACCGCGCCCAGCAGGACAGTTTCCTCCCGGTTA
TGGAGGACGGCACCGTCATTCTCGTCGGCGCCACCACCGAAAACCCGTCCTTCGAGCTCAATGCCGCTCTGCTGTCGCGC
GCCCGGGTGCTGACCTTCAAGTCGCATGACGAGGAGAGCCTGGAGGAATTGCTGAAGCGCGCCGAGGCGATCGAGCAGAA
GCCGCTGCCGTTGACCGAGGAAGCGCGTCTCAGCCTGATCTGCATGGCCGACGGCGACGGACGCGCGGTGTTGACGCTTG
CCGAAGAAGTGTGGCGGGCCGCCCGCGAGGGCGAGAGTTTCGACACCGAAGGCCTGACGCGCATCGTCCAGCGCCGCGCT
CCGGTCTACGACAAGGCGCAGGACGGCCATTACAATCTGATCTCGGCGCTGCACAAATCCGTGCGCGGCTCGGATCCCGA
TGCCGCCCTCTATTATCTCGCCCGCATGTTCGATGCCGGCGAAGATCCGCTTTATCTCGGCCGGCGGTTGGTGCGCATGG
CGGTGGAGGATATCGGCCTTGCCGATCCGCAGGCGCTGGTGATCTGCAACGCCGCCAAGGATGCTTACGAGTATCTCGGC
TCTCCGGAAGGCGAACTGGCGTTGGCGCAGGCCTGCGTCTATCTCGCCACCGCGCCGAAATCGAATGCCGTCTACACCGC
CTTCAAGGCGGCAAGCCAGGCCGCCAAGCATAACGGTTCGCTGCTGCCGCCCAAGCATATCCTCAACGCGCCGACCAAGC
TGATGAAGGGCGAAGGTTACGGCGAGGGCTACCGCTACGATCACGATGAACCGGACGCCTTTTCCGGCCAGGATTATTTC
CCGGAGAAGATGGGCCGCCAGACTTTCTACGATCCGCCGGAGCGTGGTTTCGAGCGTGATATCCGCAAGCGGCTGGAATG
GTGGGAAAAACTTCGTCGGGAGCGCAATCCGCGCTGA

Upstream 100 bases:

>100_bases
TGAAGTCGACCAGCGAGCTGTCCCAAATCGCCGATAGCGACCCCGGCCTCTGGCGGGTGGAAATCGAGCGCGACGGCCAG
CGCATCCGGCAGTTCTTCCG

Downstream 100 bases:

>100_bases
ACCTTCAAGACGCGCGCGGCGCCTTCTGATTTGGCGGCGCGGCGATCACCTTGACGGACGATTCCGCCAGCCCGTGATGG
CCTTCCATATCGACGACGAT

Product: recombination factor protein RarA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 438; Mature: 437

Protein sequence:

>438_residues
MSNDLFAPRVPEEVAARRPLADRLRPKTLADVTGQEHLTGEDGVLKRMIESDSLGSMIFWGPPGTGKTTVARLLSGEAGL
AFEQISAIFSGVADLKKMFETARLRRMDGRQTLLFVDEIHRFNRAQQDSFLPVMEDGTVILVGATTENPSFELNAALLSR
ARVLTFKSHDEESLEELLKRAEAIEQKPLPLTEEARLSLICMADGDGRAVLTLAEEVWRAAREGESFDTEGLTRIVQRRA
PVYDKAQDGHYNLISALHKSVRGSDPDAALYYLARMFDAGEDPLYLGRRLVRMAVEDIGLADPQALVICNAAKDAYEYLG
SPEGELALAQACVYLATAPKSNAVYTAFKAASQAAKHNGSLLPPKHILNAPTKLMKGEGYGEGYRYDHDEPDAFSGQDYF
PEKMGRQTFYDPPERGFERDIRKRLEWWEKLRRERNPR

Sequences:

>Translated_438_residues
MSNDLFAPRVPEEVAARRPLADRLRPKTLADVTGQEHLTGEDGVLKRMIESDSLGSMIFWGPPGTGKTTVARLLSGEAGL
AFEQISAIFSGVADLKKMFETARLRRMDGRQTLLFVDEIHRFNRAQQDSFLPVMEDGTVILVGATTENPSFELNAALLSR
ARVLTFKSHDEESLEELLKRAEAIEQKPLPLTEEARLSLICMADGDGRAVLTLAEEVWRAAREGESFDTEGLTRIVQRRA
PVYDKAQDGHYNLISALHKSVRGSDPDAALYYLARMFDAGEDPLYLGRRLVRMAVEDIGLADPQALVICNAAKDAYEYLG
SPEGELALAQACVYLATAPKSNAVYTAFKAASQAAKHNGSLLPPKHILNAPTKLMKGEGYGEGYRYDHDEPDAFSGQDYF
PEKMGRQTFYDPPERGFERDIRKRLEWWEKLRRERNPR
>Mature_437_residues
SNDLFAPRVPEEVAARRPLADRLRPKTLADVTGQEHLTGEDGVLKRMIESDSLGSMIFWGPPGTGKTTVARLLSGEAGLA
FEQISAIFSGVADLKKMFETARLRRMDGRQTLLFVDEIHRFNRAQQDSFLPVMEDGTVILVGATTENPSFELNAALLSRA
RVLTFKSHDEESLEELLKRAEAIEQKPLPLTEEARLSLICMADGDGRAVLTLAEEVWRAAREGESFDTEGLTRIVQRRAP
VYDKAQDGHYNLISALHKSVRGSDPDAALYYLARMFDAGEDPLYLGRRLVRMAVEDIGLADPQALVICNAAKDAYEYLGS
PEGELALAQACVYLATAPKSNAVYTAFKAASQAAKHNGSLLPPKHILNAPTKLMKGEGYGEGYRYDHDEPDAFSGQDYFP
EKMGRQTFYDPPERGFERDIRKRLEWWEKLRRERNPR

Specific function: Unknown

COG id: COG2256

COG function: function code L; ATPase related to the helicase subunit of the Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rarA family [H]

Homologues:

Organism=Homo sapiens, GI18426902, Length=439, Percent_Identity=41.6856492027335, Blast_Score=316, Evalue=3e-86,
Organism=Homo sapiens, GI18426904, Length=439, Percent_Identity=37.8132118451025, Blast_Score=263, Evalue=2e-70,
Organism=Escherichia coli, GI1787119, Length=422, Percent_Identity=49.5260663507109, Blast_Score=385, Evalue=1e-108,
Organism=Escherichia coli, GI1788167, Length=259, Percent_Identity=28.5714285714286, Blast_Score=65, Evalue=1e-11,
Organism=Saccharomyces cerevisiae, GI6324111, Length=422, Percent_Identity=40.9952606635071, Blast_Score=305, Evalue=7e-84,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR003959
- InterPro:   IPR021886 [H]

Pfam domain/function: PF00004 AAA; PF12002 MgsA_C [H]

EC number: NA

Molecular weight: Translated: 48937; Mature: 48806

Theoretical pI: Translated: 5.42; Mature: 5.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNDLFAPRVPEEVAARRPLADRLRPKTLADVTGQEHLTGEDGVLKRMIESDSLGSMIFW
CCCCCCCCCCCHHHHHCCCHHHHCCCHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCEEEE
GPPGTGKTTVARLLSGEAGLAFEQISAIFSGVADLKKMFETARLRRMDGRQTLLFVDEIH
CCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHH
RFNRAQQDSFLPVMEDGTVILVGATTENPSFELNAALLSRARVLTFKSHDEESLEELLKR
HHHHHCCCCCCCEECCCCEEEEEECCCCCCCCHHHHHHHHHHEEEECCCCHHHHHHHHHH
AEAIEQKPLPLTEEARLSLICMADGDGRAVLTLAEEVWRAAREGESFDTEGLTRIVQRRA
HHHHHCCCCCCCCCCCEEEEEEECCCCCEEHHHHHHHHHHHHCCCCCCHHHHHHHHHHCC
PVYDKAQDGHYNLISALHKSVRGSDPDAALYYLARMFDAGEDPLYLGRRLVRMAVEDIGL
CCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCC
ADPQALVICNAAKDAYEYLGSPEGELALAQACVYLATAPKSNAVYTAFKAASQAAKHNGS
CCCCEEEEECCHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCC
LLPPKHILNAPTKLMKGEGYGEGYRYDHDEPDAFSGQDYFPEKMGRQTFYDPPERGFERD
CCCHHHHHCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCHHHHHHH
IRKRLEWWEKLRRERNPR
HHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SNDLFAPRVPEEVAARRPLADRLRPKTLADVTGQEHLTGEDGVLKRMIESDSLGSMIFW
CCCCCCCCCCHHHHHCCCHHHHCCCHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCEEEE
GPPGTGKTTVARLLSGEAGLAFEQISAIFSGVADLKKMFETARLRRMDGRQTLLFVDEIH
CCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHH
RFNRAQQDSFLPVMEDGTVILVGATTENPSFELNAALLSRARVLTFKSHDEESLEELLKR
HHHHHCCCCCCCEECCCCEEEEEECCCCCCCCHHHHHHHHHHEEEECCCCHHHHHHHHHH
AEAIEQKPLPLTEEARLSLICMADGDGRAVLTLAEEVWRAAREGESFDTEGLTRIVQRRA
HHHHHCCCCCCCCCCCEEEEEEECCCCCEEHHHHHHHHHHHHCCCCCCHHHHHHHHHHCC
PVYDKAQDGHYNLISALHKSVRGSDPDAALYYLARMFDAGEDPLYLGRRLVRMAVEDIGL
CCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCC
ADPQALVICNAAKDAYEYLGSPEGELALAQACVYLATAPKSNAVYTAFKAASQAAKHNGS
CCCCEEEEECCHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCC
LLPPKHILNAPTKLMKGEGYGEGYRYDHDEPDAFSGQDYFPEKMGRQTFYDPPERGFERD
CCCHHHHHCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCHHHHHHH
IRKRLEWWEKLRRERNPR
HHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12704232 [H]