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The map label for this gene is ihfA [H]

Identifier: 209548801

GI number: 209548801

Start: 1208380

End: 1208718

Strand: Direct

Name: ihfA [H]

Synonym: Rleg2_1198

Alternate gene names: 209548801

Gene position: 1208380-1208718 (Clockwise)

Preceding gene: 209548800

Following gene: 209548802

Centisome position: 26.63

GC content: 59.88

Gene sequence:

>339_bases
ATGACCGGAAAAACAGTGACGCGAGCAGACCTGGCGGAATCGGTTTTCCGCAAGGTCGGGCTTTCCCGGACCGAATCTGC
GGAACTTGTGGAAACCGTCATCGACGAAGTTTGCAACGCCATCGTGCGCGGTGAAACCGTCAAGCTGTCCTCCTTCGCGA
CCTTCCAGGTGCGCGACAAGAACGAGCGGATCGGCCGCAACCCGAAGACCGGTGAAGAGGTTCCGATTTCTCCCCGCCGG
GTCATGACTTTCAAGGCGTCGAACGTGCTGAAGACGCGCATCCTCAAGGCGCATGTCGCCCGCAAGGTCAAGCTGAAGCC
GCAGAATCCGGCCTCCTGA

Upstream 100 bases:

>100_bases
AATCCAAAAAAACTGGCGGCGAACAAGAGCTTGACCGTAAGGCGCAAGACAAATACTCTTTGCGCGATTTCACAAAATAT
TTGAAATGGGCGGGGAAACC

Downstream 100 bases:

>100_bases
TCATCGGCTTCCCGTTTCGAAACGGCGTTTTTTTCCCTTCGCACCGTCCTGCGTTGTGCGCAACGTCGAGACATGACTTG
AATTGTCGGCGCCAAACCGT

Product: integration host factor subunit alpha

Products: NA

Alternate protein names: IHF-alpha [H]

Number of amino acids: Translated: 112; Mature: 111

Protein sequence:

>112_residues
MTGKTVTRADLAESVFRKVGLSRTESAELVETVIDEVCNAIVRGETVKLSSFATFQVRDKNERIGRNPKTGEEVPISPRR
VMTFKASNVLKTRILKAHVARKVKLKPQNPAS

Sequences:

>Translated_112_residues
MTGKTVTRADLAESVFRKVGLSRTESAELVETVIDEVCNAIVRGETVKLSSFATFQVRDKNERIGRNPKTGEEVPISPRR
VMTFKASNVLKTRILKAHVARKVKLKPQNPAS
>Mature_111_residues
TGKTVTRADLAESVFRKVGLSRTESAELVETVIDEVCNAIVRGETVKLSSFATFQVRDKNERIGRNPKTGEEVPISPRRV
MTFKASNVLKTRILKAHVARKVKLKPQNPAS

Specific function: This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control [H]

COG id: COG0776

COG function: function code L; Bacterial nucleoid DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial histone-like protein family [H]

Homologues:

Organism=Escherichia coli, GI1788005, Length=92, Percent_Identity=50, Blast_Score=102, Evalue=8e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000119
- InterPro:   IPR020816
- InterPro:   IPR010992
- InterPro:   IPR005684 [H]

Pfam domain/function: PF00216 Bac_DNA_binding [H]

EC number: NA

Molecular weight: Translated: 12436; Mature: 12304

Theoretical pI: Translated: 11.14; Mature: 11.14

Prosite motif: PS00045 HISTONE_LIKE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTGKTVTRADLAESVFRKVGLSRTESAELVETVIDEVCNAIVRGETVKLSSFATFQVRDK
CCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEECCEEEEEECCC
NERIGRNPKTGEEVPISPRRVMTFKASNVLKTRILKAHVARKVKLKPQNPAS
CHHCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHEECCCCCCCC
>Mature Secondary Structure 
TGKTVTRADLAESVFRKVGLSRTESAELVETVIDEVCNAIVRGETVKLSSFATFQVRDK
CCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEECCEEEEEECCC
NERIGRNPKTGEEVPISPRRVMTFKASNVLKTRILKAHVARKVKLKPQNPAS
CHHCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA