Click here to switch to the map view.

The map label for this gene is yhcK [H]

Identifier: 209548679

GI number: 209548679

Start: 1097458

End: 1098495

Strand: Reverse

Name: yhcK [H]

Synonym: Rleg2_1076

Alternate gene names: 209548679

Gene position: 1098495-1097458 (Counterclockwise)

Preceding gene: 209548680

Following gene: 209548678

Centisome position: 24.21

GC content: 62.62

Gene sequence:

>1038_bases
ATGCAGAATGCAAGCGCAAACGCACTGGTGCCGCGCACGGCGCCCATGGCCGACATTCAGAAGATCGCCCAGCATATGGC
GCGCTTGAATGTCGCGGCGCTGCCGCGCAACTACGAACTCTTTCATGAGGCAATCATCGGGCTCAATGCCGGTCTCGCGC
AGGATATCGCCGCACTCGGACCCCAGCCGCAACAGGCGATGCTCGACGAACTCGGCCTGAAGTACCGTCTCGTCAGCCAT
TGCGGGCTGGCGGGCGAGGCTTCGCAGAACGAGGCGAGCCGGTTGCTGCGCGAAGCGGCGGAGCGGCTTGCAGAAGGGCT
GCGACACAGAGAAGCCTTTGCACGCGCCTGCGCCACGATCCTGAAATCCGTCTCCGGCCACGACGACCAAAGCCTTGCCG
CGTTCATCGGCGAGGTCGATTACCTCTCCGCCTCGCTCTCGACGGTGCTGTCGGCGGAGATGGAAATCGGCGCCCGGCTG
GAGGACGATATCAAGAGGCTGGAAACGCTGGAGCGCGGCATTTCGGCAATGCAATCGGCCGCCGTGGCCGACCGGATTAC
CGGACTTCCGAACCGCATCGCGCTGAACCGGGAGATCGCCGATCTCTATGAGCGCGAAGAGGGTTTTGCCGGCAGCGCGC
TTGTTATGGTCGATATCGACAATTTCACCGAACTCAACGACAGATATGGCACCCAGGCCGGCAACAAGCTGCTGAAGAAG
CTCGCCGGCCTTTTCCGCAAATCGATCAAGAAGAACGACTTCGTCGCCCGCACCGAGGCTGACGAATTCGCGCTATTGTT
TTCCAACGTCGGAATGCAGGATGCGATGACGATCGCCGAACGCCTGCGCGCCTCGGTCGAGGATAATCTCGTCTTTGCGA
CCTCCGACAAGGCCGATCACGGCAGGCTGACCATCTCGATCGGCGTAGCGCTCAGCACCGATGCGGCAACGCCCGGCCAG
TTGCAGGCCAATGCCCGCGTGGCGCTTCTTGCCGCACAGTCCAACCCGCGACGGCCGGTGCAGGCTTTCGGCCACTGA

Upstream 100 bases:

>100_bases
TCGCTGCGAATCCAGCGGTTCCCACCCAAGAATTCAGCCTCTCTTAAAGCGTTGAGGGCATAGCGGAATGAAGGGACAAG
CCGGGCCGCGAGGGATCGTC

Downstream 100 bases:

>100_bases
AGGCGCGGACAGCGCTCTTACGGCGACAAGCAGGCTTGTCGCGGGACGAGCGCTCTTGCCTTAGCGGGCGCTTTCGGCCA
AAACGCCGGCCATGATCACG

Product: diguanylate cyclase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 345; Mature: 345

Protein sequence:

>345_residues
MQNASANALVPRTAPMADIQKIAQHMARLNVAALPRNYELFHEAIIGLNAGLAQDIAALGPQPQQAMLDELGLKYRLVSH
CGLAGEASQNEASRLLREAAERLAEGLRHREAFARACATILKSVSGHDDQSLAAFIGEVDYLSASLSTVLSAEMEIGARL
EDDIKRLETLERGISAMQSAAVADRITGLPNRIALNREIADLYEREEGFAGSALVMVDIDNFTELNDRYGTQAGNKLLKK
LAGLFRKSIKKNDFVARTEADEFALLFSNVGMQDAMTIAERLRASVEDNLVFATSDKADHGRLTISIGVALSTDAATPGQ
LQANARVALLAAQSNPRRPVQAFGH

Sequences:

>Translated_345_residues
MQNASANALVPRTAPMADIQKIAQHMARLNVAALPRNYELFHEAIIGLNAGLAQDIAALGPQPQQAMLDELGLKYRLVSH
CGLAGEASQNEASRLLREAAERLAEGLRHREAFARACATILKSVSGHDDQSLAAFIGEVDYLSASLSTVLSAEMEIGARL
EDDIKRLETLERGISAMQSAAVADRITGLPNRIALNREIADLYEREEGFAGSALVMVDIDNFTELNDRYGTQAGNKLLKK
LAGLFRKSIKKNDFVARTEADEFALLFSNVGMQDAMTIAERLRASVEDNLVFATSDKADHGRLTISIGVALSTDAATPGQ
LQANARVALLAAQSNPRRPVQAFGH
>Mature_345_residues
MQNASANALVPRTAPMADIQKIAQHMARLNVAALPRNYELFHEAIIGLNAGLAQDIAALGPQPQQAMLDELGLKYRLVSH
CGLAGEASQNEASRLLREAAERLAEGLRHREAFARACATILKSVSGHDDQSLAAFIGEVDYLSASLSTVLSAEMEIGARL
EDDIKRLETLERGISAMQSAAVADRITGLPNRIALNREIADLYEREEGFAGSALVMVDIDNFTELNDRYGTQAGNKLLKK
LAGLFRKSIKKNDFVARTEADEFALLFSNVGMQDAMTIAERLRASVEDNLVFATSDKADHGRLTISIGVALSTDAATPGQ
LQANARVALLAAQSNPRRPVQAFGH

Specific function: Unknown

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GGDEF domain [H]

Homologues:

Organism=Escherichia coli, GI87082007, Length=204, Percent_Identity=29.9019607843137, Blast_Score=71, Evalue=9e-14,
Organism=Escherichia coli, GI1788085, Length=134, Percent_Identity=33.5820895522388, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1787262, Length=201, Percent_Identity=26.865671641791, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI145693134, Length=168, Percent_Identity=28.5714285714286, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI87081881, Length=183, Percent_Identity=30.6010928961749, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1788381, Length=113, Percent_Identity=32.7433628318584, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR011620 [H]

Pfam domain/function: PF07694 5TM-5TMR_LYT; PF00990 GGDEF [H]

EC number: NA

Molecular weight: Translated: 37247; Mature: 37247

Theoretical pI: Translated: 5.69; Mature: 5.69

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQNASANALVPRTAPMADIQKIAQHMARLNVAALPRNYELFHEAIIGLNAGLAQDIAALG
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHCC
PQPQQAMLDELGLKYRLVSHCGLAGEASQNEASRLLREAAERLAEGLRHREAFARACATI
CCCHHHHHHHHCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LKSVSGHDDQSLAAFIGEVDYLSASLSTVLSAEMEIGARLEDDIKRLETLERGISAMQSA
HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
AVADRITGLPNRIALNREIADLYEREEGFAGSALVMVDIDNFTELNDRYGTQAGNKLLKK
HHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHCCHHHHHHHHH
LAGLFRKSIKKNDFVARTEADEFALLFSNVGMQDAMTIAERLRASVEDNLVFATSDKADH
HHHHHHHHHCCCCCEEECCCHHHHHHHHCCCHHHHHHHHHHHHHHHHCCEEEEECCCCCC
GRLTISIGVALSTDAATPGQLQANARVALLAAQSNPRRPVQAFGH
CEEEEEEEEEEECCCCCCCCEECCCEEEEEEECCCCCCCHHHCCC
>Mature Secondary Structure
MQNASANALVPRTAPMADIQKIAQHMARLNVAALPRNYELFHEAIIGLNAGLAQDIAALG
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHCC
PQPQQAMLDELGLKYRLVSHCGLAGEASQNEASRLLREAAERLAEGLRHREAFARACATI
CCCHHHHHHHHCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LKSVSGHDDQSLAAFIGEVDYLSASLSTVLSAEMEIGARLEDDIKRLETLERGISAMQSA
HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
AVADRITGLPNRIALNREIADLYEREEGFAGSALVMVDIDNFTELNDRYGTQAGNKLLKK
HHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHCCHHHHHHHHH
LAGLFRKSIKKNDFVARTEADEFALLFSNVGMQDAMTIAERLRASVEDNLVFATSDKADH
HHHHHHHHHCCCCCEEECCCHHHHHHHHCCCHHHHHHHHHHHHHHHHCCEEEEECCCCCC
GRLTISIGVALSTDAATPGQLQANARVALLAAQSNPRRPVQAFGH
CEEEEEEEEEEECCCCCCCCEECCCEEEEEEECCCCCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969498; 9384377 [H]