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The map label for this gene is xynD [H]

Identifier: 209548677

GI number: 209548677

Start: 1094512

End: 1095354

Strand: Reverse

Name: xynD [H]

Synonym: Rleg2_1074

Alternate gene names: 209548677

Gene position: 1095354-1094512 (Counterclockwise)

Preceding gene: 209548678

Following gene: 209548676

Centisome position: 24.14

GC content: 62.63

Gene sequence:

>843_bases
ATGTATCGCTTTTTCATTCTGTCCTGCATGGCCCTCACGGCCACCCTGTCTGCCTGCAGCACCACCAAACAGGCCCCGGA
TACCTCGATCAAGACCTCCTCGGTGATCGCGCCCGCGGAGCGGAAACTTGCCTTTGCCGGCGACGATGCGGCGCCGCGCA
TGAGCGGGTGGCACCAACTGGCCGGGCGGACGCTTGAGGTCTCCTCGCTTGCCGATCTCAAGCTGCAGGACAAGGAAGTG
ATCCTGAGCTTCGATGACGGCCCGATCCCGGGGCGGACCGACAAGGTTTTGGCGATCCTCGATCGGTTCGGCGTCAAGGG
CGCCTTCATGATGGTCGGCGAAATGGCCGAAATGCATCCGGCGCTGGCCCGCAGGGTCGCCGAGGACGGCAACACGATCG
GCAGCCACACCTACGACCACGCCGACCTGACTTCGCTTGATTTCGACGCGGCAATGGCCGAGGTGGTCAAGGGCGAATTG
GCGGTGACCAAGGCGACGGGAACCGACGTCTCCTTCTTCCGCTTCCCCTATCTTGCCGAGAGCCACAGGCTGTGCGCCGC
GATCGCCATGCGCGATCTGGTGGTCATGGATGTCGATATCGACAGCAAGGACTATTTCGCCATCACGCCGGCCTCGGTGA
CGCAGCGGACGATGGACCTGCTGCACAAACGCGGCCGCGGCATCATCCTGATGCATGACATCCACAAACGCACGGCAACG
ATGCTGCCGACCCTGCTCTCCGAACTCGAATCCGAAGGCTACAAGGTGGTGACGCTGAAGCTCAAGAAGACGCAGGCGCC
GAGCAACCTCGTCGCTTCTGCCGATTTGGTGACGACCCGGTAG

Upstream 100 bases:

>100_bases
GTGCCGCGGATCGGCACAATTCGAGCCACTATCAACCAATCGTTAACCATAATTCGAAAGGTTGCCTCAACATTCGTTAC
CGATTTGTTGAGCCCTTTCG

Downstream 100 bases:

>100_bases
GCCGGGTTGCCAAGTCCGGACGCGCTGCCTAGATCTGTTCGACGTCAACGAACCGGCAGGTCAGCTATGAACCTTCATCT
CGAAACGGACGACGATCCGC

Product: polysaccharide deacetylase

Products: NA

Alternate protein names: Endo-1,4-beta-xylanase D; XYLD; Xylanase D; Acetylated xylan deacetylase [H]

Number of amino acids: Translated: 280; Mature: 280

Protein sequence:

>280_residues
MYRFFILSCMALTATLSACSTTKQAPDTSIKTSSVIAPAERKLAFAGDDAAPRMSGWHQLAGRTLEVSSLADLKLQDKEV
ILSFDDGPIPGRTDKVLAILDRFGVKGAFMMVGEMAEMHPALARRVAEDGNTIGSHTYDHADLTSLDFDAAMAEVVKGEL
AVTKATGTDVSFFRFPYLAESHRLCAAIAMRDLVVMDVDIDSKDYFAITPASVTQRTMDLLHKRGRGIILMHDIHKRTAT
MLPTLLSELESEGYKVVTLKLKKTQAPSNLVASADLVTTR

Sequences:

>Translated_280_residues
MYRFFILSCMALTATLSACSTTKQAPDTSIKTSSVIAPAERKLAFAGDDAAPRMSGWHQLAGRTLEVSSLADLKLQDKEV
ILSFDDGPIPGRTDKVLAILDRFGVKGAFMMVGEMAEMHPALARRVAEDGNTIGSHTYDHADLTSLDFDAAMAEVVKGEL
AVTKATGTDVSFFRFPYLAESHRLCAAIAMRDLVVMDVDIDSKDYFAITPASVTQRTMDLLHKRGRGIILMHDIHKRTAT
MLPTLLSELESEGYKVVTLKLKKTQAPSNLVASADLVTTR
>Mature_280_residues
MYRFFILSCMALTATLSACSTTKQAPDTSIKTSSVIAPAERKLAFAGDDAAPRMSGWHQLAGRTLEVSSLADLKLQDKEV
ILSFDDGPIPGRTDKVLAILDRFGVKGAFMMVGEMAEMHPALARRVAEDGNTIGSHTYDHADLTSLDFDAAMAEVVKGEL
AVTKATGTDVSFFRFPYLAESHRLCAAIAMRDLVVMDVDIDSKDYFAITPASVTQRTMDLLHKRGRGIILMHDIHKRTAT
MLPTLLSELESEGYKVVTLKLKKTQAPSNLVASADLVTTR

Specific function: Endo-acting xylanase which displays no detectable activity against polysaccharides other than xylan. Hydrolyzes glucosidic bonds with retention of anomeric configuration [H]

COG id: COG0726

COG function: function code G; Predicted xylanase/chitin deacetylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 polysaccharide deacetylase domain [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6323338, Length=163, Percent_Identity=30.0613496932515, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008965
- InterPro:   IPR012291
- InterPro:   IPR001919
- InterPro:   IPR008985
- InterPro:   IPR011330
- InterPro:   IPR001137
- InterPro:   IPR013319
- InterPro:   IPR018208
- InterPro:   IPR002509
- InterPro:   IPR006311 [H]

Pfam domain/function: PF00553 CBM_2; PF00457 Glyco_hydro_11; PF01522 Polysacc_deac_1 [H]

EC number: =3.2.1.8 [H]

Molecular weight: Translated: 30528; Mature: 30528

Theoretical pI: Translated: 6.72; Mature: 6.72

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
4.6 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYRFFILSCMALTATLSACSTTKQAPDTSIKTSSVIAPAERKLAFAGDDAAPRMSGWHQL
CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEECCCHHEEEECCCCCCCCHHHHHHH
AGRTLEVSSLADLKLQDKEVILSFDDGPIPGRTDKVLAILDRFGVKGAFMMVGEMAEMHP
CCCEEEECCCCCCEECCCEEEEEECCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHH
ALARRVAEDGNTIGSHTYDHADLTSLDFDAAMAEVVKGELAVTKATGTDVSFFRFPYLAE
HHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCEEEEEECCCCCEEEECCCHHC
SHRLCAAIAMRDLVVMDVDIDSKDYFAITPASVTQRTMDLLHKRGRGIILMHDIHKRTAT
CHHHHHHHHHHCEEEEEEECCCCCEEEECCHHHHHHHHHHHHHCCCCEEEEEHHHHHHHH
MLPTLLSELESEGYKVVTLKLKKTQAPSNLVASADLVTTR
HHHHHHHHHHHCCEEEEEEEEECCCCCCHHEECCCEEECC
>Mature Secondary Structure
MYRFFILSCMALTATLSACSTTKQAPDTSIKTSSVIAPAERKLAFAGDDAAPRMSGWHQL
CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEECCCHHEEEECCCCCCCCHHHHHHH
AGRTLEVSSLADLKLQDKEVILSFDDGPIPGRTDKVLAILDRFGVKGAFMMVGEMAEMHP
CCCEEEECCCCCCEECCCEEEEEECCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHH
ALARRVAEDGNTIGSHTYDHADLTSLDFDAAMAEVVKGELAVTKATGTDVSFFRFPYLAE
HHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCEEEEEECCCCCEEEECCCHHC
SHRLCAAIAMRDLVVMDVDIDSKDYFAITPASVTQRTMDLLHKRGRGIILMHDIHKRTAT
CHHHHHHHHHHCEEEEEEECCCCCEEEECCHHHHHHHHHHHHHCCCCEEEEEHHHHHHHH
MLPTLLSELESEGYKVVTLKLKKTQAPSNLVASADLVTTR
HHHHHHHHHHHCCEEEEEEEEECCCCCCHHEECCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8170399 [H]