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The map label for this gene is ybfI [H]

Identifier: 209548650

GI number: 209548650

Start: 1066194

End: 1067015

Strand: Direct

Name: ybfI [H]

Synonym: Rleg2_1047

Alternate gene names: 209548650

Gene position: 1066194-1067015 (Clockwise)

Preceding gene: 209548648

Following gene: 209548651

Centisome position: 23.5

GC content: 62.77

Gene sequence:

>822_bases
ATGCCGCTTGCCAACGTGGAAACGGCTCGCTTCTGGCGGGATGGCCGCTTCCGCGATATGGAGTGCTTGAGCGCCACTTT
CCTGACGCACGAATACGCGCCGCACGCGCACGATACGTTCAGCATCGGCGCGATCGAAAGCGGCACCCAGATCGCTACTC
TCAGCGGCAGGAAAGAGGAAACCGGCCCGGGTGATTTTTATCTCATCGATCCCGGCGTCGTTCATGATGGCACGCCCGGC
GGAGAAGGCTATCGCTATCGCATGATCTATCCGGATACGAAGCTGTTCGTCGATATTCTGGAGGATGTCACGGGCAAGGC
CTTCCACGCGACGCCGTCTTTCTCCAGTGCGCTGCCGCGCGATCCGCAACTTGCCAATGCGTTTCATGCCGCCCACCGCA
CGCTCGAAAGGGGAGCAGGCGCGCTGGAGGCCGATGAAAGCATGTTCTCGGTGCTGGCGGCGATCTTTGCGCGCCACGGC
AGCACGATCGTCGTGCCTGTCGATACGCAGGAACGAAGCGCGGTCGCCCGCGCCCGCGAATATCTCATCGAGAATTTCGA
CAGCGATGTCGGCCTCGAGGAACTGGCCGGCGTGGCGGGATTGAGCCGCGCTCACCTCATCCGCGCCTTCCGCAAGGAAT
ATCACATTACCCCGCATGCCTTCCTCACCGATCGGCGCGTGCAGGTGGCCCGTCGGCTGCTGCGGCAGGGGCACATGCCG
GCCGATATTGCGCTTGAATGCGGTTTTGCCGATCAGGCGCATTTTACCCGGCACTTCAAGGCGCGCACGGGCGTAACCCC
CGGCCAATTCCGCACCGGCTGA

Upstream 100 bases:

>100_bases
CTTTGCTTCTTGCACGATCACTTTTGTTCAAGACGCATGCTGGCTTCGGCGTTAATCTTATCGGATGCACAACGTATCGC
AGAAAGAGGCGGCAGACGCC

Downstream 100 bases:

>100_bases
TCACTTTCGTTCAATACAGCCATGGCGGGCTGGGCTAACCCTCCGCGATCTTGATCAGGAGGTTGCCATGTTGCAGCACA
GCCGGCCATCCGGTGAATTT

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 273; Mature: 272

Protein sequence:

>273_residues
MPLANVETARFWRDGRFRDMECLSATFLTHEYAPHAHDTFSIGAIESGTQIATLSGRKEETGPGDFYLIDPGVVHDGTPG
GEGYRYRMIYPDTKLFVDILEDVTGKAFHATPSFSSALPRDPQLANAFHAAHRTLERGAGALEADESMFSVLAAIFARHG
STIVVPVDTQERSAVARAREYLIENFDSDVGLEELAGVAGLSRAHLIRAFRKEYHITPHAFLTDRRVQVARRLLRQGHMP
ADIALECGFADQAHFTRHFKARTGVTPGQFRTG

Sequences:

>Translated_273_residues
MPLANVETARFWRDGRFRDMECLSATFLTHEYAPHAHDTFSIGAIESGTQIATLSGRKEETGPGDFYLIDPGVVHDGTPG
GEGYRYRMIYPDTKLFVDILEDVTGKAFHATPSFSSALPRDPQLANAFHAAHRTLERGAGALEADESMFSVLAAIFARHG
STIVVPVDTQERSAVARAREYLIENFDSDVGLEELAGVAGLSRAHLIRAFRKEYHITPHAFLTDRRVQVARRLLRQGHMP
ADIALECGFADQAHFTRHFKARTGVTPGQFRTG
>Mature_272_residues
PLANVETARFWRDGRFRDMECLSATFLTHEYAPHAHDTFSIGAIESGTQIATLSGRKEETGPGDFYLIDPGVVHDGTPGG
EGYRYRMIYPDTKLFVDILEDVTGKAFHATPSFSSALPRDPQLANAFHAAHRTLERGAGALEADESMFSVLAAIFARHGS
TIVVPVDTQERSAVARAREYLIENFDSDVGLEELAGVAGLSRAHLIRAFRKEYHITPHAFLTDRRVQVARRLLRQGHMPA
DIALECGFADQAHFTRHFKARTGVTPGQFRTG

Specific function: This Protein Controls The Expression Of At Least Six Genes That Are Involved In The Transport And Catabolism Of L-Arabinose. It Regulates Initiation Of Transcription Of The Arabad Operon And It Also Controls Its Own Synthesis. The L- Arabinose Operon Dis

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 30210; Mature: 30079

Theoretical pI: Translated: 6.76; Mature: 6.76

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPLANVETARFWRDGRFRDMECLSATFLTHEYAPHAHDTFSIGAIESGTQIATLSGRKEE
CCCCCCCHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCEEEEECCCCCC
TGPGDFYLIDPGVVHDGTPGGEGYRYRMIYPDTKLFVDILEDVTGKAFHATPSFSSALPR
CCCCCEEEECCCEEECCCCCCCCEEEEEECCCHHHHHHHHHHHCCCEEECCCCHHHCCCC
DPQLANAFHAAHRTLERGAGALEADESMFSVLAAIFARHGSTIVVPVDTQERSAVARARE
CCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHH
YLIENFDSDVGLEELAGVAGLSRAHLIRAFRKEYHITPHAFLTDRRVQVARRLLRQGHMP
HHHHHCCCCCCHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCC
ADIALECGFADQAHFTRHFKARTGVTPGQFRTG
HHEEEECCCCCHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
PLANVETARFWRDGRFRDMECLSATFLTHEYAPHAHDTFSIGAIESGTQIATLSGRKEE
CCCCCCHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCEEEEECCCCCC
TGPGDFYLIDPGVVHDGTPGGEGYRYRMIYPDTKLFVDILEDVTGKAFHATPSFSSALPR
CCCCCEEEECCCEEECCCCCCCCEEEEEECCCHHHHHHHHHHHCCCEEECCCCHHHCCCC
DPQLANAFHAAHRTLERGAGALEADESMFSVLAAIFARHGSTIVVPVDTQERSAVARARE
CCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHH
YLIENFDSDVGLEELAGVAGLSRAHLIRAFRKEYHITPHAFLTDRRVQVARRLLRQGHMP
HHHHHCCCCCCHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCC
ADIALECGFADQAHFTRHFKARTGVTPGQFRTG
HHEEEECCCCCHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]